data_7QF9
#
_model_server_result.job_id            7Oq8OtV7cGOHCqBUysr7nQ 
_model_server_result.datetime_utc      '2024-11-23 01:35:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qf9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    7QF9 
#
_exptl.entry_id    7QF9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              206.367 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            FARNESYL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QF9 
_cell.length_a            34.626 
_cell.length_b            82.789 
_cell.length_c            112.467 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QF9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,L 1 1 
B,C,I,J,K,M,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C1 FAR . BBB FAR 201 1_555 E SG CMT . BBB CMT 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? 
covale ? covale2 C C LYS 9 EEE LYS 19 1_555 C N CMT 10 EEE CMT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.275 ? 
covale ? covale3 C SG CMT 10 EEE CMT 20 1_555 K C1 FAR . EEE FAR 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.614 ? 
#
_chem_comp.formula           'C15 H26' 
_chem_comp.formula_weight    206.367 
_chem_comp.id                FAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              FARNESYL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 FAR sing 108 n n 
C1 H11 FAR sing 109 n n 
C1 H12A FAR sing 110 n n 
C1 H13 FAR sing 111 n n 
C2 C3 FAR doub 112 e n 
C2 H2 FAR sing 113 n n 
C3 C5 FAR sing 114 n n 
C3 C4 FAR sing 115 n n 
C5 C6 FAR sing 116 n n 
C5 H51 FAR sing 117 n n 
C5 H52 FAR sing 118 n n 
C6 C7 FAR sing 119 n n 
C6 H61 FAR sing 120 n n 
C6 H62 FAR sing 121 n n 
C7 C8 FAR doub 122 e n 
C7 H7 FAR sing 123 n n 
C8 C9 FAR sing 124 n n 
C8 C10 FAR sing 125 n n 
C9 C11 FAR sing 126 n n 
C9 H91 FAR sing 127 n n 
C9 H92 FAR sing 128 n n 
C11 C12 FAR sing 129 n n 
C11 H111 FAR sing 130 n n 
C11 H112 FAR sing 131 n n 
C12 C13 FAR doub 132 n n 
C12 H12 FAR sing 133 n n 
C13 C14 FAR sing 134 n n 
C13 C15 FAR sing 135 n n 
C14 H141 FAR sing 136 n n 
C14 H142 FAR sing 137 n n 
C14 H143 FAR sing 138 n n 
C15 H151 FAR sing 139 n n 
C15 H152 FAR sing 140 n n 
C15 H153 FAR sing 141 n n 
C4 H41 FAR sing 142 n n 
C4 H42 FAR sing 143 n n 
C4 H43 FAR sing 144 n n 
C10 H101 FAR sing 145 n n 
C10 H102 FAR sing 146 n n 
C10 H103 FAR sing 147 n n 
#
_atom_sites.entry_id                     7QF9 
_atom_sites.fract_transf_matrix[1][1]    0.02888 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008891 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 FAR BBB 1 201 2 FAR FAR . 
E 4 CMT BBB 1 202 2 CMT CMT . 
F 5 EDO BBB 1 203 1 EDO EDO . 
G 5 EDO BBB 1 204 3 EDO EDO . 
H 5 EDO BBB 1 205 5 EDO EDO . 
I 5 EDO AAA 1 201 2 EDO EDO . 
J 5 EDO AAA 1 202 4 EDO EDO . 
K 3 FAR EEE 1 201 1 FAR FAR . 
L 6 HOH BBB 1 301 91 HOH HOH . 
L 6 HOH BBB 2 302 58 HOH HOH . 
L 6 HOH BBB 3 303 100 HOH HOH . 
L 6 HOH BBB 4 304 130 HOH HOH . 
L 6 HOH BBB 5 305 95 HOH HOH . 
L 6 HOH BBB 6 306 83 HOH HOH . 
L 6 HOH BBB 7 307 49 HOH HOH . 
L 6 HOH BBB 8 308 27 HOH HOH . 
L 6 HOH BBB 9 309 16 HOH HOH . 
L 6 HOH BBB 10 310 52 HOH HOH . 
L 6 HOH BBB 11 311 4 HOH HOH . 
L 6 HOH BBB 12 312 1 HOH HOH . 
L 6 HOH BBB 13 313 45 HOH HOH . 
L 6 HOH BBB 14 314 112 HOH HOH . 
L 6 HOH BBB 15 315 44 HOH HOH . 
L 6 HOH BBB 16 316 14 HOH HOH . 
L 6 HOH BBB 17 317 78 HOH HOH . 
L 6 HOH BBB 18 318 34 HOH HOH . 
L 6 HOH BBB 19 319 32 HOH HOH . 
L 6 HOH BBB 20 320 62 HOH HOH . 
L 6 HOH BBB 21 321 13 HOH HOH . 
L 6 HOH BBB 22 322 116 HOH HOH . 
L 6 HOH BBB 23 323 141 HOH HOH . 
L 6 HOH BBB 24 324 111 HOH HOH . 
L 6 HOH BBB 25 325 48 HOH HOH . 
L 6 HOH BBB 26 326 57 HOH HOH . 
L 6 HOH BBB 27 327 94 HOH HOH . 
L 6 HOH BBB 28 328 76 HOH HOH . 
L 6 HOH BBB 29 329 77 HOH HOH . 
L 6 HOH BBB 30 330 41 HOH HOH . 
L 6 HOH BBB 31 331 40 HOH HOH . 
L 6 HOH BBB 32 332 110 HOH HOH . 
L 6 HOH BBB 33 333 67 HOH HOH . 
L 6 HOH BBB 34 334 117 HOH HOH . 
L 6 HOH BBB 35 335 65 HOH HOH . 
L 6 HOH BBB 36 336 82 HOH HOH . 
L 6 HOH BBB 37 337 17 HOH HOH . 
L 6 HOH BBB 38 338 39 HOH HOH . 
L 6 HOH BBB 39 339 134 HOH HOH . 
L 6 HOH BBB 40 340 131 HOH HOH . 
L 6 HOH BBB 41 341 56 HOH HOH . 
L 6 HOH BBB 42 342 120 HOH HOH . 
L 6 HOH BBB 43 343 33 HOH HOH . 
L 6 HOH BBB 44 344 47 HOH HOH . 
L 6 HOH BBB 45 345 8 HOH HOH . 
L 6 HOH BBB 46 346 30 HOH HOH . 
L 6 HOH BBB 47 347 60 HOH HOH . 
L 6 HOH BBB 48 348 59 HOH HOH . 
L 6 HOH BBB 49 349 55 HOH HOH . 
L 6 HOH BBB 50 350 37 HOH HOH . 
L 6 HOH BBB 51 351 42 HOH HOH . 
L 6 HOH BBB 52 352 54 HOH HOH . 
L 6 HOH BBB 53 353 61 HOH HOH . 
L 6 HOH BBB 54 354 136 HOH HOH . 
L 6 HOH BBB 55 355 79 HOH HOH . 
L 6 HOH BBB 56 356 106 HOH HOH . 
L 6 HOH BBB 57 357 53 HOH HOH . 
L 6 HOH BBB 58 358 97 HOH HOH . 
L 6 HOH BBB 59 359 139 HOH HOH . 
L 6 HOH BBB 60 360 70 HOH HOH . 
L 6 HOH BBB 61 361 92 HOH HOH . 
L 6 HOH BBB 62 362 68 HOH HOH . 
L 6 HOH BBB 63 363 118 HOH HOH . 
L 6 HOH BBB 64 364 105 HOH HOH . 
L 6 HOH BBB 65 365 101 HOH HOH . 
L 6 HOH BBB 66 366 124 HOH HOH . 
L 6 HOH BBB 67 367 72 HOH HOH . 
L 6 HOH BBB 68 368 31 HOH HOH . 
L 6 HOH BBB 69 369 128 HOH HOH . 
L 6 HOH BBB 70 370 151 HOH HOH . 
L 6 HOH BBB 71 371 99 HOH HOH . 
L 6 HOH BBB 72 372 150 HOH HOH . 
M 6 HOH AAA 1 301 46 HOH HOH . 
M 6 HOH AAA 2 302 12 HOH HOH . 
M 6 HOH AAA 3 303 96 HOH HOH . 
M 6 HOH AAA 4 304 89 HOH HOH . 
M 6 HOH AAA 5 305 38 HOH HOH . 
M 6 HOH AAA 6 306 87 HOH HOH . 
M 6 HOH AAA 7 307 149 HOH HOH . 
M 6 HOH AAA 8 308 144 HOH HOH . 
M 6 HOH AAA 9 309 115 HOH HOH . 
M 6 HOH AAA 10 310 15 HOH HOH . 
M 6 HOH AAA 11 311 36 HOH HOH . 
M 6 HOH AAA 12 312 64 HOH HOH . 
M 6 HOH AAA 13 313 3 HOH HOH . 
M 6 HOH AAA 14 314 135 HOH HOH . 
M 6 HOH AAA 15 315 10 HOH HOH . 
M 6 HOH AAA 16 316 85 HOH HOH . 
M 6 HOH AAA 17 317 132 HOH HOH . 
M 6 HOH AAA 18 318 107 HOH HOH . 
M 6 HOH AAA 19 319 147 HOH HOH . 
M 6 HOH AAA 20 320 2 HOH HOH . 
M 6 HOH AAA 21 321 102 HOH HOH . 
M 6 HOH AAA 22 322 143 HOH HOH . 
M 6 HOH AAA 23 323 86 HOH HOH . 
M 6 HOH AAA 24 324 126 HOH HOH . 
M 6 HOH AAA 25 325 140 HOH HOH . 
M 6 HOH AAA 26 326 50 HOH HOH . 
M 6 HOH AAA 27 327 11 HOH HOH . 
M 6 HOH AAA 28 328 129 HOH HOH . 
M 6 HOH AAA 29 329 114 HOH HOH . 
M 6 HOH AAA 30 330 125 HOH HOH . 
M 6 HOH AAA 31 331 5 HOH HOH . 
M 6 HOH AAA 32 332 19 HOH HOH . 
M 6 HOH AAA 33 333 29 HOH HOH . 
M 6 HOH AAA 34 334 18 HOH HOH . 
M 6 HOH AAA 35 335 127 HOH HOH . 
M 6 HOH AAA 36 336 63 HOH HOH . 
M 6 HOH AAA 37 337 142 HOH HOH . 
M 6 HOH AAA 38 338 98 HOH HOH . 
M 6 HOH AAA 39 339 108 HOH HOH . 
M 6 HOH AAA 40 340 123 HOH HOH . 
M 6 HOH AAA 41 341 74 HOH HOH . 
M 6 HOH AAA 42 342 119 HOH HOH . 
M 6 HOH AAA 43 343 73 HOH HOH . 
M 6 HOH AAA 44 344 43 HOH HOH . 
M 6 HOH AAA 45 345 51 HOH HOH . 
M 6 HOH AAA 46 346 88 HOH HOH . 
M 6 HOH AAA 47 347 35 HOH HOH . 
M 6 HOH AAA 48 348 146 HOH HOH . 
M 6 HOH AAA 49 349 9 HOH HOH . 
M 6 HOH AAA 50 350 28 HOH HOH . 
M 6 HOH AAA 51 351 121 HOH HOH . 
M 6 HOH AAA 52 352 69 HOH HOH . 
M 6 HOH AAA 53 353 103 HOH HOH . 
M 6 HOH AAA 54 354 81 HOH HOH . 
M 6 HOH AAA 55 355 80 HOH HOH . 
M 6 HOH AAA 56 356 137 HOH HOH . 
M 6 HOH AAA 57 357 90 HOH HOH . 
M 6 HOH AAA 58 358 26 HOH HOH . 
M 6 HOH AAA 59 359 153 HOH HOH . 
M 6 HOH AAA 60 360 145 HOH HOH . 
M 6 HOH AAA 61 361 93 HOH HOH . 
M 6 HOH AAA 62 362 113 HOH HOH . 
M 6 HOH AAA 63 363 133 HOH HOH . 
M 6 HOH AAA 64 364 138 HOH HOH . 
N 6 HOH EEE 1 301 148 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 FAR . . . D 3 -10.048 9.605 -14.064 1 83.15 ? C1 FAR 201 BBB 1 
HETATM 2 C C2 FAR . . . D 3 -8.695 10.071 -14.504 1 79.9 ? C2 FAR 201 BBB 1 
HETATM 3 C C3 FAR . . . D 3 -7.768 9.33 -15.103 1 73.59 ? C3 FAR 201 BBB 1 
HETATM 4 C C5 FAR . . . D 3 -6.478 9.957 -15.549 1 76.9 ? C5 FAR 201 BBB 1 
HETATM 5 C C6 FAR . . . D 3 -6.087 11.161 -14.715 1 75.48 ? C6 FAR 201 BBB 1 
HETATM 6 C C7 FAR . . . D 3 -4.911 11.891 -15.286 1 75.25 ? C7 FAR 201 BBB 1 
HETATM 7 C C8 FAR . . . D 3 -3.645 11.491 -15.357 1 68.02 ? C8 FAR 201 BBB 1 
HETATM 8 C C9 FAR . . . D 3 -2.602 12.348 -16.018 1 65.15 ? C9 FAR 201 BBB 1 
HETATM 9 C C11 FAR . . . D 3 -2.842 13.833 -15.837 1 65.16 ? C11 FAR 201 BBB 1 
HETATM 10 C C12 FAR . . . D 3 -1.564 14.594 -15.661 1 64.02 ? C12 FAR 201 BBB 1 
HETATM 11 C C13 FAR . . . D 3 -1.246 15.446 -14.699 1 60.68 ? C13 FAR 201 BBB 1 
HETATM 12 C C14 FAR . . . D 3 0.15 15.951 -14.491 1 58.1 ? C14 FAR 201 BBB 1 
HETATM 13 C C15 FAR . . . D 3 -2.258 15.982 -13.732 1 55.72 ? C15 FAR 201 BBB 1 
HETATM 14 C C4 FAR . . . D 3 -7.902 7.862 -15.38 1 69.11 ? C4 FAR 201 BBB 1 
HETATM 15 C C10 FAR . . . D 3 -3.141 10.19 -14.81 1 69.34 ? C10 FAR 201 BBB 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           15 
#