data_7QFE
#
_model_server_result.job_id            fuB9fBUBx1Z3DXs9LpF9IQ 
_model_server_result.datetime_utc      '2024-11-14 18:46:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qfe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":610}' 
#
_entry.id    7QFE 
#
_exptl.entry_id    7QFE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.58 
_cell.angle_gamma         90 
_cell.entry_id            7QFE 
_cell.length_a            184.897 
_cell.length_b            38.642 
_cell.length_c            96.213 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QFE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 G N N 
? 6 H N N 
? 6 I N N 
? 6 J N N 
? 6 K N N 
? 6 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 277 n n 
C1 H11 MPD sing 278 n n 
C1 H12 MPD sing 279 n n 
C1 H13 MPD sing 280 n n 
C2 O2 MPD sing 281 n n 
C2 CM MPD sing 282 n n 
C2 C3 MPD sing 283 n n 
O2 HO2 MPD sing 284 n n 
CM HM1 MPD sing 285 n n 
CM HM2 MPD sing 286 n n 
CM HM3 MPD sing 287 n n 
C3 C4 MPD sing 288 n n 
C3 H31 MPD sing 289 n n 
C3 H32 MPD sing 290 n n 
C4 O4 MPD sing 291 n n 
C4 C5 MPD sing 292 n n 
C4 H4 MPD sing 293 n n 
O4 HO4 MPD sing 294 n n 
C5 H51 MPD sing 295 n n 
C5 H52 MPD sing 296 n n 
C5 H53 MPD sing 297 n n 
#
_atom_sites.entry_id                     7QFE 
_atom_sites.fract_transf_matrix[1][1]    0.005408 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001406 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025879 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MYR A 1 601 601 MYR MYR . 
C 2 MYR A 1 602 602 MYR MYR . 
D 3 4TX A 1 603 603 4TX 4TX . 
E 4 PGE A 1 604 614 PGE PGE . 
F 5 PG4 A 1 605 615 PG4 PG4 . 
G 6 MPD A 1 606 616 MPD MPD . 
H 6 MPD A 1 607 617 MPD MPD . 
I 6 MPD A 1 608 618 MPD MPD . 
J 6 MPD A 1 609 620 MPD MPD . 
K 6 MPD A 1 610 621 MPD MPD . 
L 6 MPD A 1 611 622 MPD MPD . 
M 3 4TX A 1 612 623 4TX 4TX . 
N 7 PO4 A 1 613 1 PO4 PO4 . 
O 8 HOH A 1 701 90 HOH HOH . 
O 8 HOH A 2 702 67 HOH HOH . 
O 8 HOH A 3 703 91 HOH HOH . 
O 8 HOH A 4 704 36 HOH HOH . 
O 8 HOH A 5 705 12 HOH HOH . 
O 8 HOH A 6 706 79 HOH HOH . 
O 8 HOH A 7 707 17 HOH HOH . 
O 8 HOH A 8 708 77 HOH HOH . 
O 8 HOH A 9 709 2 HOH HOH . 
O 8 HOH A 10 710 21 HOH HOH . 
O 8 HOH A 11 711 74 HOH HOH . 
O 8 HOH A 12 712 80 HOH HOH . 
O 8 HOH A 13 713 45 HOH HOH . 
O 8 HOH A 14 714 81 HOH HOH . 
O 8 HOH A 15 715 46 HOH HOH . 
O 8 HOH A 16 716 20 HOH HOH . 
O 8 HOH A 17 717 58 HOH HOH . 
O 8 HOH A 18 718 28 HOH HOH . 
O 8 HOH A 19 719 88 HOH HOH . 
O 8 HOH A 20 720 23 HOH HOH . 
O 8 HOH A 21 721 31 HOH HOH . 
O 8 HOH A 22 722 100 HOH HOH . 
O 8 HOH A 23 723 76 HOH HOH . 
O 8 HOH A 24 724 15 HOH HOH . 
O 8 HOH A 25 725 32 HOH HOH . 
O 8 HOH A 26 726 97 HOH HOH . 
O 8 HOH A 27 727 26 HOH HOH . 
O 8 HOH A 28 728 4 HOH HOH . 
O 8 HOH A 29 729 18 HOH HOH . 
O 8 HOH A 30 730 59 HOH HOH . 
O 8 HOH A 31 731 22 HOH HOH . 
O 8 HOH A 32 732 3 HOH HOH . 
O 8 HOH A 33 733 6 HOH HOH . 
O 8 HOH A 34 734 30 HOH HOH . 
O 8 HOH A 35 735 84 HOH HOH . 
O 8 HOH A 36 736 78 HOH HOH . 
O 8 HOH A 37 737 96 HOH HOH . 
O 8 HOH A 38 738 16 HOH HOH . 
O 8 HOH A 39 739 9 HOH HOH . 
O 8 HOH A 40 740 25 HOH HOH . 
O 8 HOH A 41 741 52 HOH HOH . 
O 8 HOH A 42 742 11 HOH HOH . 
O 8 HOH A 43 743 24 HOH HOH . 
O 8 HOH A 44 744 7 HOH HOH . 
O 8 HOH A 45 745 94 HOH HOH . 
O 8 HOH A 46 746 10 HOH HOH . 
O 8 HOH A 47 747 72 HOH HOH . 
O 8 HOH A 48 748 1 HOH HOH . 
O 8 HOH A 49 749 75 HOH HOH . 
O 8 HOH A 50 750 14 HOH HOH . 
O 8 HOH A 51 751 56 HOH HOH . 
O 8 HOH A 52 752 8 HOH HOH . 
O 8 HOH A 53 753 5 HOH HOH . 
O 8 HOH A 54 754 99 HOH HOH . 
O 8 HOH A 55 755 66 HOH HOH . 
O 8 HOH A 56 756 87 HOH HOH . 
O 8 HOH A 57 757 92 HOH HOH . 
O 8 HOH A 58 758 82 HOH HOH . 
O 8 HOH A 59 759 101 HOH HOH . 
O 8 HOH A 60 760 34 HOH HOH . 
O 8 HOH A 61 761 83 HOH HOH . 
O 8 HOH A 62 762 27 HOH HOH . 
O 8 HOH A 63 763 29 HOH HOH . 
O 8 HOH A 64 764 95 HOH HOH . 
O 8 HOH A 65 765 44 HOH HOH . 
O 8 HOH A 66 766 93 HOH HOH . 
O 8 HOH A 67 767 48 HOH HOH . 
O 8 HOH A 68 768 98 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . K 6 30.553 11.338 29.292 1 62.32 ? C1 MPD 610 A 1 
HETATM 2 C C2 MPD . . . K 6 31.788 10.461 29.196 1 59.95 ? C2 MPD 610 A 1 
HETATM 3 O O2 MPD . . . K 6 31.835 9.865 27.89 1 53.41 ? O2 MPD 610 A 1 
HETATM 4 C CM MPD . . . K 6 33.049 11.289 29.365 1 59.05 ? CM MPD 610 A 1 
HETATM 5 C C3 MPD . . . K 6 31.722 9.322 30.214 1 57.32 ? C3 MPD 610 A 1 
HETATM 6 C C4 MPD . . . K 6 30.403 8.623 30.088 1 60.68 ? C4 MPD 610 A 1 
HETATM 7 O O4 MPD . . . K 6 30.577 7.454 29.3 1 66.64 ? O4 MPD 610 A 1 
HETATM 8 C C5 MPD . . . K 6 29.811 8.26 31.415 1 58.84 ? C5 MPD 610 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           8 
#