data_7QFE # _model_server_result.job_id xha4mIpwVFgLiAlLuaRPow _model_server_result.datetime_utc '2024-11-14 18:52:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":612}' # _entry.id 7QFE # _exptl.entry_id 7QFE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 250.333 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(2,5-dimethylphenoxy)-2,2-dimethylpentanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.58 _cell.angle_gamma 90 _cell.entry_id 7QFE _cell.length_a 184.897 _cell.length_b 38.642 _cell.length_c 96.213 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C15 H22 O3' _chem_comp.formula_weight 250.333 _chem_comp.id 4TX _chem_comp.mon_nstd_flag . _chem_comp.name '5-(2,5-dimethylphenoxy)-2,2-dimethylpentanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C11 4TX doub 1 n y C10 C9 4TX sing 2 n y C11 C12 4TX sing 3 n y C14 C9 4TX sing 4 n n C9 C8 4TX doub 5 n y C12 C13 4TX sing 6 n n C12 C7 4TX doub 7 n y C8 C7 4TX sing 8 n y C7 O2 4TX sing 9 n n O2 C6 4TX sing 10 n n C6 C5 4TX sing 11 n n C5 C4 4TX sing 12 n n C4 C1 4TX sing 13 n n C3 C1 4TX sing 14 n n C2 C1 4TX sing 15 n n C1 C 4TX sing 16 n n C O 4TX doub 17 n n C O1 4TX sing 18 n n C8 H13 4TX sing 19 n n C6 H12 4TX sing 20 n n C6 H11 4TX sing 21 n n C5 H10 4TX sing 22 n n C5 H9 4TX sing 23 n n C10 H14 4TX sing 24 n n C11 H15 4TX sing 25 n n O1 H 4TX sing 26 n n C2 H2 4TX sing 27 n n C2 H3 4TX sing 28 n n C2 H1 4TX sing 29 n n C3 H4 4TX sing 30 n n C3 H5 4TX sing 31 n n C3 H6 4TX sing 32 n n C4 H7 4TX sing 33 n n C4 H8 4TX sing 34 n n C13 H16 4TX sing 35 n n C13 H18 4TX sing 36 n n C13 H17 4TX sing 37 n n C14 H19 4TX sing 38 n n C14 H21 4TX sing 39 n n C14 H20 4TX sing 40 n n # _atom_sites.entry_id 7QFE _atom_sites.fract_transf_matrix[1][1] 0.005408 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001406 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025879 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYR A 1 601 601 MYR MYR . C 2 MYR A 1 602 602 MYR MYR . D 3 4TX A 1 603 603 4TX 4TX . E 4 PGE A 1 604 614 PGE PGE . F 5 PG4 A 1 605 615 PG4 PG4 . G 6 MPD A 1 606 616 MPD MPD . H 6 MPD A 1 607 617 MPD MPD . I 6 MPD A 1 608 618 MPD MPD . J 6 MPD A 1 609 620 MPD MPD . K 6 MPD A 1 610 621 MPD MPD . L 6 MPD A 1 611 622 MPD MPD . M 3 4TX A 1 612 623 4TX 4TX . N 7 PO4 A 1 613 1 PO4 PO4 . O 8 HOH A 1 701 90 HOH HOH . O 8 HOH A 2 702 67 HOH HOH . O 8 HOH A 3 703 91 HOH HOH . O 8 HOH A 4 704 36 HOH HOH . O 8 HOH A 5 705 12 HOH HOH . O 8 HOH A 6 706 79 HOH HOH . O 8 HOH A 7 707 17 HOH HOH . O 8 HOH A 8 708 77 HOH HOH . O 8 HOH A 9 709 2 HOH HOH . O 8 HOH A 10 710 21 HOH HOH . O 8 HOH A 11 711 74 HOH HOH . O 8 HOH A 12 712 80 HOH HOH . O 8 HOH A 13 713 45 HOH HOH . O 8 HOH A 14 714 81 HOH HOH . O 8 HOH A 15 715 46 HOH HOH . O 8 HOH A 16 716 20 HOH HOH . O 8 HOH A 17 717 58 HOH HOH . O 8 HOH A 18 718 28 HOH HOH . O 8 HOH A 19 719 88 HOH HOH . O 8 HOH A 20 720 23 HOH HOH . O 8 HOH A 21 721 31 HOH HOH . O 8 HOH A 22 722 100 HOH HOH . O 8 HOH A 23 723 76 HOH HOH . O 8 HOH A 24 724 15 HOH HOH . O 8 HOH A 25 725 32 HOH HOH . O 8 HOH A 26 726 97 HOH HOH . O 8 HOH A 27 727 26 HOH HOH . O 8 HOH A 28 728 4 HOH HOH . O 8 HOH A 29 729 18 HOH HOH . O 8 HOH A 30 730 59 HOH HOH . O 8 HOH A 31 731 22 HOH HOH . O 8 HOH A 32 732 3 HOH HOH . O 8 HOH A 33 733 6 HOH HOH . O 8 HOH A 34 734 30 HOH HOH . O 8 HOH A 35 735 84 HOH HOH . O 8 HOH A 36 736 78 HOH HOH . O 8 HOH A 37 737 96 HOH HOH . O 8 HOH A 38 738 16 HOH HOH . O 8 HOH A 39 739 9 HOH HOH . O 8 HOH A 40 740 25 HOH HOH . O 8 HOH A 41 741 52 HOH HOH . O 8 HOH A 42 742 11 HOH HOH . O 8 HOH A 43 743 24 HOH HOH . O 8 HOH A 44 744 7 HOH HOH . O 8 HOH A 45 745 94 HOH HOH . O 8 HOH A 46 746 10 HOH HOH . O 8 HOH A 47 747 72 HOH HOH . O 8 HOH A 48 748 1 HOH HOH . O 8 HOH A 49 749 75 HOH HOH . O 8 HOH A 50 750 14 HOH HOH . O 8 HOH A 51 751 56 HOH HOH . O 8 HOH A 52 752 8 HOH HOH . O 8 HOH A 53 753 5 HOH HOH . O 8 HOH A 54 754 99 HOH HOH . O 8 HOH A 55 755 66 HOH HOH . O 8 HOH A 56 756 87 HOH HOH . O 8 HOH A 57 757 92 HOH HOH . O 8 HOH A 58 758 82 HOH HOH . O 8 HOH A 59 759 101 HOH HOH . O 8 HOH A 60 760 34 HOH HOH . O 8 HOH A 61 761 83 HOH HOH . O 8 HOH A 62 762 27 HOH HOH . O 8 HOH A 63 763 29 HOH HOH . O 8 HOH A 64 764 95 HOH HOH . O 8 HOH A 65 765 44 HOH HOH . O 8 HOH A 66 766 93 HOH HOH . O 8 HOH A 67 767 48 HOH HOH . O 8 HOH A 68 768 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 4TX . . . M 3 26.095 3.958 7.954 0.74 24.57 ? C8 4TX 612 A 1 HETATM 2 C C6 4TX . . . M 3 27.776 6.546 7.981 0.74 28.39 ? C6 4TX 612 A 1 HETATM 3 C C5 4TX . . . M 3 28.839 7.449 8.675 0.74 27.62 ? C5 4TX 612 A 1 HETATM 4 C C1 4TX . . . M 3 29.351 9.907 8.597 0.74 27.72 ? C1 4TX 612 A 1 HETATM 5 C C9 4TX . . . M 3 26.105 2.619 7.557 0.74 24.11 ? C9 4TX 612 A 1 HETATM 6 C C10 4TX . . . M 3 27.162 1.776 7.815 0.74 24.1 ? C10 4TX 612 A 1 HETATM 7 C C11 4TX . . . M 3 28.272 2.252 8.535 0.74 27.26 ? C11 4TX 612 A 1 HETATM 8 O O 4TX . . . M 3 29.585 12.294 8.544 0.74 29.47 ? O 4TX 612 A 1 HETATM 9 C C 4TX . . . M 3 28.779 11.299 8.762 0.74 30.65 ? C 4TX 612 A 1 HETATM 10 O O1 4TX . . . M 3 27.532 11.514 9.122 0.74 28.68 ? O1 4TX 612 A 1 HETATM 11 C C2 4TX . . . M 3 29.9 9.756 7.213 0.74 28.79 ? C2 4TX 612 A 1 HETATM 12 C C3 4TX . . . M 3 30.493 9.758 9.589 0.74 26.87 ? C3 4TX 612 A 1 HETATM 13 C C4 4TX . . . M 3 28.247 8.874 8.807 0.74 28.31 ? C4 4TX 612 A 1 HETATM 14 O O2 4TX . . . M 3 27.266 5.781 9.086 0.74 26.79 ? O2 4TX 612 A 1 HETATM 15 C C7 4TX . . . M 3 27.214 4.429 8.643 0.74 27.11 ? C7 4TX 612 A 1 HETATM 16 C C12 4TX . . . M 3 28.258 3.614 8.963 0.74 27.38 ? C12 4TX 612 A 1 HETATM 17 C C13 4TX . . . M 3 29.496 4.166 9.706 0.74 28.7 ? C13 4TX 612 A 1 HETATM 18 C C14 4TX . . . M 3 24.884 2.093 6.802 0.74 23.92 ? C14 4TX 612 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #