data_7QFM
#
_model_server_result.job_id            qBndBpVMbhypSRr4pP0TWg 
_model_server_result.datetime_utc      '2025-03-05 19:07:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qfm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7QFM 
#
_exptl.entry_id    7QFM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              265.263 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-[(~{E})-(2-oxidanylidene-1~{H}-indol-3-ylidene)methyl]benzoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7QFM 
_cell.length_a            96.818 
_cell.length_b            96.818 
_cell.length_c            80.147 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QFM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    'P 65' 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 260 A SER 260 1_555 A N SEP 261 A SEP 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C SEP 261 A SEP 261 1_555 A N GLU 262 A GLU 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C16 H11 N O3' 
_chem_comp.formula_weight    265.263 
_chem_comp.id                AY3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-[(~{E})-(2-oxidanylidene-1~{H}-indol-3-ylidene)methyl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C13 AY3 doub 70 n n 
C13 C12 AY3 sing 71 n n 
C13 O1 AY3 sing 72 n n 
C14 C15 AY3 doub 73 n y 
C14 C12 AY3 sing 74 n y 
C15 C9 AY3 sing 75 n y 
C12 C11 AY3 doub 76 n y 
C9 C8 AY3 sing 77 n n 
C9 C10 AY3 doub 78 n y 
C11 C10 AY3 sing 79 n y 
C8 C1 AY3 doub 80 e n 
O C AY3 doub 81 n n 
C1 C AY3 sing 82 n n 
C1 C2 AY3 sing 83 n n 
C N AY3 sing 84 n n 
C2 C7 AY3 doub 85 n y 
C2 C3 AY3 sing 86 n y 
C7 C6 AY3 sing 87 n y 
N C3 AY3 sing 88 n n 
C3 C4 AY3 doub 89 n y 
C6 C5 AY3 doub 90 n y 
C4 C5 AY3 sing 91 n y 
C15 H1 AY3 sing 92 n n 
C14 H2 AY3 sing 93 n n 
C11 H3 AY3 sing 94 n n 
C10 H4 AY3 sing 95 n n 
O1 H5 AY3 sing 96 n n 
C8 H6 AY3 sing 97 n n 
C7 H7 AY3 sing 98 n n 
N H8 AY3 sing 99 n n 
C6 H9 AY3 sing 100 n n 
C5 H10 AY3 sing 101 n n 
C4 H11 AY3 sing 102 n n 
#
_atom_sites.entry_id                     7QFM 
_atom_sites.fract_transf_matrix[1][1]    0.010329 
_atom_sites.fract_transf_matrix[1][2]    0.005963 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011927 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012477 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 401 1 GOL GOL . 
D 4 AY3 A 1 402 1 AY3 503 . 
E 5 HOH A 1 501 151 HOH HOH . 
E 5 HOH A 2 502 140 HOH HOH . 
E 5 HOH A 3 503 147 HOH HOH . 
E 5 HOH A 4 504 36 HOH HOH . 
E 5 HOH A 5 505 158 HOH HOH . 
E 5 HOH A 6 506 46 HOH HOH . 
E 5 HOH A 7 507 136 HOH HOH . 
E 5 HOH A 8 508 59 HOH HOH . 
E 5 HOH A 9 509 120 HOH HOH . 
E 5 HOH A 10 510 111 HOH HOH . 
E 5 HOH A 11 511 79 HOH HOH . 
E 5 HOH A 12 512 74 HOH HOH . 
E 5 HOH A 13 513 4 HOH HOH . 
E 5 HOH A 14 514 116 HOH HOH . 
E 5 HOH A 15 515 115 HOH HOH . 
E 5 HOH A 16 516 9 HOH HOH . 
E 5 HOH A 17 517 69 HOH HOH . 
E 5 HOH A 18 518 32 HOH HOH . 
E 5 HOH A 19 519 42 HOH HOH . 
E 5 HOH A 20 520 25 HOH HOH . 
E 5 HOH A 21 521 67 HOH HOH . 
E 5 HOH A 22 522 11 HOH HOH . 
E 5 HOH A 23 523 85 HOH HOH . 
E 5 HOH A 24 524 130 HOH HOH . 
E 5 HOH A 25 525 22 HOH HOH . 
E 5 HOH A 26 526 21 HOH HOH . 
E 5 HOH A 27 527 72 HOH HOH . 
E 5 HOH A 28 528 37 HOH HOH . 
E 5 HOH A 29 529 64 HOH HOH . 
E 5 HOH A 30 530 50 HOH HOH . 
E 5 HOH A 31 531 52 HOH HOH . 
E 5 HOH A 32 532 142 HOH HOH . 
E 5 HOH A 33 533 8 HOH HOH . 
E 5 HOH A 34 534 94 HOH HOH . 
E 5 HOH A 35 535 135 HOH HOH . 
E 5 HOH A 36 536 20 HOH HOH . 
E 5 HOH A 37 537 2 HOH HOH . 
E 5 HOH A 38 538 76 HOH HOH . 
E 5 HOH A 39 539 77 HOH HOH . 
E 5 HOH A 40 540 26 HOH HOH . 
E 5 HOH A 41 541 30 HOH HOH . 
E 5 HOH A 42 542 31 HOH HOH . 
E 5 HOH A 43 543 55 HOH HOH . 
E 5 HOH A 44 544 47 HOH HOH . 
E 5 HOH A 45 545 43 HOH HOH . 
E 5 HOH A 46 546 49 HOH HOH . 
E 5 HOH A 47 547 90 HOH HOH . 
E 5 HOH A 48 548 38 HOH HOH . 
E 5 HOH A 49 549 134 HOH HOH . 
E 5 HOH A 50 550 12 HOH HOH . 
E 5 HOH A 51 551 27 HOH HOH . 
E 5 HOH A 52 552 35 HOH HOH . 
E 5 HOH A 53 553 133 HOH HOH . 
E 5 HOH A 54 554 109 HOH HOH . 
E 5 HOH A 55 555 143 HOH HOH . 
E 5 HOH A 56 556 117 HOH HOH . 
E 5 HOH A 57 557 5 HOH HOH . 
E 5 HOH A 58 558 41 HOH HOH . 
E 5 HOH A 59 559 1 HOH HOH . 
E 5 HOH A 60 560 13 HOH HOH . 
E 5 HOH A 61 561 150 HOH HOH . 
E 5 HOH A 62 562 34 HOH HOH . 
E 5 HOH A 63 563 58 HOH HOH . 
E 5 HOH A 64 564 63 HOH HOH . 
E 5 HOH A 65 565 23 HOH HOH . 
E 5 HOH A 66 566 83 HOH HOH . 
E 5 HOH A 67 567 88 HOH HOH . 
E 5 HOH A 68 568 113 HOH HOH . 
E 5 HOH A 69 569 112 HOH HOH . 
E 5 HOH A 70 570 144 HOH HOH . 
E 5 HOH A 71 571 28 HOH HOH . 
E 5 HOH A 72 572 14 HOH HOH . 
E 5 HOH A 73 573 123 HOH HOH . 
E 5 HOH A 74 574 56 HOH HOH . 
E 5 HOH A 75 575 128 HOH HOH . 
E 5 HOH A 76 576 93 HOH HOH . 
E 5 HOH A 77 577 81 HOH HOH . 
E 5 HOH A 78 578 18 HOH HOH . 
E 5 HOH A 79 579 138 HOH HOH . 
E 5 HOH A 80 580 101 HOH HOH . 
E 5 HOH A 81 581 118 HOH HOH . 
E 5 HOH A 82 582 84 HOH HOH . 
E 5 HOH A 83 583 75 HOH HOH . 
E 5 HOH A 84 584 122 HOH HOH . 
E 5 HOH A 85 585 96 HOH HOH . 
E 5 HOH A 86 586 95 HOH HOH . 
E 5 HOH A 87 587 10 HOH HOH . 
E 5 HOH A 88 588 44 HOH HOH . 
E 5 HOH A 89 589 141 HOH HOH . 
E 5 HOH A 90 590 99 HOH HOH . 
E 5 HOH A 91 591 78 HOH HOH . 
E 5 HOH A 92 592 15 HOH HOH . 
E 5 HOH A 93 593 48 HOH HOH . 
E 5 HOH A 94 594 24 HOH HOH . 
E 5 HOH A 95 595 121 HOH HOH . 
E 5 HOH A 96 596 19 HOH HOH . 
E 5 HOH A 97 597 119 HOH HOH . 
E 5 HOH A 98 598 148 HOH HOH . 
E 5 HOH A 99 599 33 HOH HOH . 
E 5 HOH A 100 600 145 HOH HOH . 
E 5 HOH A 101 601 156 HOH HOH . 
E 5 HOH A 102 602 98 HOH HOH . 
E 5 HOH A 103 603 108 HOH HOH . 
E 5 HOH A 104 604 89 HOH HOH . 
E 5 HOH A 105 605 146 HOH HOH . 
E 5 HOH A 106 606 131 HOH HOH . 
E 5 HOH A 107 607 17 HOH HOH . 
E 5 HOH A 108 608 155 HOH HOH . 
E 5 HOH A 109 609 149 HOH HOH . 
E 5 HOH A 110 610 159 HOH HOH . 
E 5 HOH A 111 611 126 HOH HOH . 
E 5 HOH A 112 612 16 HOH HOH . 
E 5 HOH A 113 613 129 HOH HOH . 
E 5 HOH A 114 614 153 HOH HOH . 
E 5 HOH A 115 615 51 HOH HOH . 
E 5 HOH A 116 616 152 HOH HOH . 
E 5 HOH A 117 617 86 HOH HOH . 
F 5 HOH D 1 101 104 HOH HOH . 
F 5 HOH D 2 102 39 HOH HOH . 
F 5 HOH D 3 103 40 HOH HOH . 
F 5 HOH D 4 104 127 HOH HOH . 
F 5 HOH D 5 105 157 HOH HOH . 
F 5 HOH D 6 106 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 AY3 . . . D 4 -119.435 203.299 -3.084 1 36.43 ? C15 AY3 402 A 1 
HETATM 2 C C14 AY3 . . . D 4 -119.272 202.058 -3.666 1 34.86 ? C14 AY3 402 A 1 
HETATM 3 C C13 AY3 . . . D 4 -118.371 199.741 -3.679 1 35.69 ? C13 AY3 402 A 1 
HETATM 4 C C12 AY3 . . . D 4 -118.498 201.083 -3.054 1 31.98 ? C12 AY3 402 A 1 
HETATM 5 C C11 AY3 . . . D 4 -117.875 201.387 -1.85 1 38.02 ? C11 AY3 402 A 1 
HETATM 6 C C10 AY3 . . . D 4 -118.03 202.635 -1.275 1 36.01 ? C10 AY3 402 A 1 
HETATM 7 O O2 AY3 . . . D 4 -118.923 199.495 -4.753 1 35 ? O2 AY3 402 A 1 
HETATM 8 C C9 AY3 . . . D 4 -118.822 203.613 -1.876 1 34.78 ? C9 AY3 402 A 1 
HETATM 9 O O1 AY3 . . . D 4 -117.652 198.876 -3.01 1 35.64 ? O1 AY3 402 A 1 
HETATM 10 C C8 AY3 . . . D 4 -119.065 204.933 -1.291 1 38.26 ? C8 AY3 402 A 1 
HETATM 11 C C1 AY3 . . . D 4 -119.453 205.239 -0.044 1 36.51 ? C1 AY3 402 A 1 
HETATM 12 O O AY3 . . . D 4 -119.486 207.672 -0.304 1 44.63 ? O AY3 402 A 1 
HETATM 13 C C AY3 . . . D 4 -119.631 206.668 0.388 1 41.57 ? C AY3 402 A 1 
HETATM 14 C C7 AY3 . . . D 4 -119.805 203.072 1.389 1 39.43 ? C7 AY3 402 A 1 
HETATM 15 C C2 AY3 . . . D 4 -119.762 204.441 1.126 1 38.62 ? C2 AY3 402 A 1 
HETATM 16 N N AY3 . . . D 4 -119.999 206.639 1.688 1 41.19 ? N AY3 402 A 1 
HETATM 17 C C6 AY3 . . . D 4 -120.162 202.626 2.653 1 42.83 ? C6 AY3 402 A 1 
HETATM 18 C C5 AY3 . . . D 4 -120.475 203.526 3.663 1 43.98 ? C5 AY3 402 A 1 
HETATM 19 C C4 AY3 . . . D 4 -120.442 204.893 3.43 1 41.96 ? C4 AY3 402 A 1 
HETATM 20 C C3 AY3 . . . D 4 -120.087 205.338 2.165 1 42.26 ? C3 AY3 402 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#