data_7QFO # _model_server_result.job_id YT0zso8T9peMk5_9hQQg6A _model_server_result.datetime_utc '2025-06-28 04:44:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qfo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 7QFO # _exptl.entry_id 7QFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QFO _cell.length_a 84.021 _cell.length_b 84.021 _cell.length_c 127.091 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 63.5455 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 63 A ASN 107 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc2 C O3G ANP . A ANP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc3 C O1B ANP . A ANP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc4 C O2A ANP . A ANP 502 1_555 D MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc5 D MG MG . A MG 503 1_555 E O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc6 D MG MG . A MG 503 1_555 E O HOH . A HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7QFO _atom_sites.fract_transf_matrix[1][1] 0.011902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011902 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ALA A 1 501 430 ALA ALA . C 3 ANP A 1 502 445 ANP ANP . D 4 MG A 1 503 3 MG MG . E 5 HOH A 1 601 96 HOH HOH . E 5 HOH A 2 602 73 HOH HOH . E 5 HOH A 3 603 63 HOH HOH . E 5 HOH A 4 604 78 HOH HOH . E 5 HOH A 5 605 58 HOH HOH . E 5 HOH A 6 606 44 HOH HOH . E 5 HOH A 7 607 98 HOH HOH . E 5 HOH A 8 608 46 HOH HOH . E 5 HOH A 9 609 36 HOH HOH . E 5 HOH A 10 610 59 HOH HOH . E 5 HOH A 11 611 52 HOH HOH . E 5 HOH A 12 612 42 HOH HOH . E 5 HOH A 13 613 51 HOH HOH . E 5 HOH A 14 614 43 HOH HOH . E 5 HOH A 15 615 86 HOH HOH . E 5 HOH A 16 616 66 HOH HOH . E 5 HOH A 17 617 74 HOH HOH . E 5 HOH A 18 618 88 HOH HOH . E 5 HOH A 19 619 32 HOH HOH . E 5 HOH A 20 620 80 HOH HOH . E 5 HOH A 21 621 54 HOH HOH . E 5 HOH A 22 622 37 HOH HOH . E 5 HOH A 23 623 3 HOH HOH . E 5 HOH A 24 624 38 HOH HOH . E 5 HOH A 25 625 75 HOH HOH . E 5 HOH A 26 626 10 HOH HOH . E 5 HOH A 27 627 34 HOH HOH . E 5 HOH A 28 628 50 HOH HOH . E 5 HOH A 29 629 70 HOH HOH . E 5 HOH A 30 630 31 HOH HOH . E 5 HOH A 31 631 8 HOH HOH . E 5 HOH A 32 632 17 HOH HOH . E 5 HOH A 33 633 90 HOH HOH . E 5 HOH A 34 634 77 HOH HOH . E 5 HOH A 35 635 56 HOH HOH . E 5 HOH A 36 636 62 HOH HOH . E 5 HOH A 37 637 4 HOH HOH . E 5 HOH A 38 638 60 HOH HOH . E 5 HOH A 39 639 87 HOH HOH . E 5 HOH A 40 640 65 HOH HOH . E 5 HOH A 41 641 45 HOH HOH . E 5 HOH A 42 642 71 HOH HOH . E 5 HOH A 43 643 68 HOH HOH . E 5 HOH A 44 644 55 HOH HOH . E 5 HOH A 45 645 81 HOH HOH . E 5 HOH A 46 646 85 HOH HOH . E 5 HOH A 47 647 53 HOH HOH . E 5 HOH A 48 648 18 HOH HOH . E 5 HOH A 49 649 67 HOH HOH . E 5 HOH A 50 650 26 HOH HOH . E 5 HOH A 51 651 72 HOH HOH . E 5 HOH A 52 652 9 HOH HOH . E 5 HOH A 53 653 29 HOH HOH . E 5 HOH A 54 654 6 HOH HOH . E 5 HOH A 55 655 99 HOH HOH . E 5 HOH A 56 656 39 HOH HOH . E 5 HOH A 57 657 61 HOH HOH . E 5 HOH A 58 658 1 HOH HOH . E 5 HOH A 59 659 57 HOH HOH . E 5 HOH A 60 660 64 HOH HOH . E 5 HOH A 61 661 15 HOH HOH . E 5 HOH A 62 662 76 HOH HOH . E 5 HOH A 63 663 40 HOH HOH . E 5 HOH A 64 664 97 HOH HOH . E 5 HOH A 65 665 27 HOH HOH . E 5 HOH A 66 666 12 HOH HOH . E 5 HOH A 67 667 83 HOH HOH . E 5 HOH A 68 668 21 HOH HOH . E 5 HOH A 69 669 93 HOH HOH . E 5 HOH A 70 670 2 HOH HOH . E 5 HOH A 71 671 7 HOH HOH . E 5 HOH A 72 672 25 HOH HOH . E 5 HOH A 73 673 35 HOH HOH . E 5 HOH A 74 674 28 HOH HOH . E 5 HOH A 75 675 11 HOH HOH . E 5 HOH A 76 676 13 HOH HOH . E 5 HOH A 77 677 82 HOH HOH . E 5 HOH A 78 678 41 HOH HOH . E 5 HOH A 79 679 5 HOH HOH . E 5 HOH A 80 680 48 HOH HOH . E 5 HOH A 81 681 69 HOH HOH . E 5 HOH A 82 682 33 HOH HOH . E 5 HOH A 83 683 89 HOH HOH . E 5 HOH A 84 684 95 HOH HOH . E 5 HOH A 85 685 20 HOH HOH . E 5 HOH A 86 686 16 HOH HOH . E 5 HOH A 87 687 24 HOH HOH . E 5 HOH A 88 688 47 HOH HOH . E 5 HOH A 89 689 84 HOH HOH . E 5 HOH A 90 690 22 HOH HOH . E 5 HOH A 91 691 14 HOH HOH . E 5 HOH A 92 692 92 HOH HOH . E 5 HOH A 93 693 49 HOH HOH . E 5 HOH A 94 694 19 HOH HOH . E 5 HOH A 95 695 79 HOH HOH . E 5 HOH A 96 696 94 HOH HOH . E 5 HOH A 97 697 30 HOH HOH . E 5 HOH A 98 698 23 HOH HOH . E 5 HOH A 99 699 91 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 0.815 15.139 32.459 1 29.64 0 PG ANP 502 A 1 HETATM 2 O O1G ANP . . . C 3 -0.377 15.374 33.393 1 30.02 0 O1G ANP 502 A 1 HETATM 3 O O2G ANP . . . C 3 0.594 13.778 31.835 1 30.71 0 O2G ANP 502 A 1 HETATM 4 O O3G ANP . . . C 3 1.181 16.141 31.459 1 27.35 0 O3G ANP 502 A 1 HETATM 5 P PB ANP . . . C 3 3.675 15.564 33.185 1 32.18 0 PB ANP 502 A 1 HETATM 6 O O1B ANP . . . C 3 3.802 16.902 32.561 1 28.7 0 O1B ANP 502 A 1 HETATM 7 O O2B ANP . . . C 3 4.52 15.335 34.415 1 32.71 0 O2B ANP 502 A 1 HETATM 8 N N3B ANP . . . C 3 2.146 15.055 33.498 1 29.28 0 N3B ANP 502 A 1 HETATM 9 P PA ANP . . . C 3 4.62 14.649 30.579 1 31.23 0 PA ANP 502 A 1 HETATM 10 O O1A ANP . . . C 3 4.614 13.324 29.942 1 29.38 0 O1A ANP 502 A 1 HETATM 11 O O2A ANP . . . C 3 3.844 15.778 29.92 1 33.61 0 O2A ANP 502 A 1 HETATM 12 O O3A ANP . . . C 3 4.165 14.506 32.089 1 30.02 0 O3A ANP 502 A 1 HETATM 13 O O5' ANP . . . C 3 6.131 15.205 30.737 1 31.16 0 O5' ANP 502 A 1 HETATM 14 C C5' ANP . . . C 3 7.06 14.268 31.345 1 31.87 0 C5' ANP 502 A 1 HETATM 15 C C4' ANP . . . C 3 8.074 15.03 32.168 1 29.29 0 C4' ANP 502 A 1 HETATM 16 O O4' ANP . . . C 3 9.04 15.645 31.28 1 31.01 0 O4' ANP 502 A 1 HETATM 17 C C3' ANP . . . C 3 7.568 16.164 33.057 1 32.12 0 C3' ANP 502 A 1 HETATM 18 O O3' ANP . . . C 3 7.217 15.637 34.342 1 31.76 0 O3' ANP 502 A 1 HETATM 19 C C2' ANP . . . C 3 8.803 17.053 33.161 1 34.4 0 C2' ANP 502 A 1 HETATM 20 O O2' ANP . . . C 3 9.67 16.575 34.166 1 33.37 0 O2' ANP 502 A 1 HETATM 21 C C1' ANP . . . C 3 9.484 16.856 31.812 1 31.13 0 C1' ANP 502 A 1 HETATM 22 N N9 ANP . . . C 3 9.275 17.883 30.821 1 32.19 0 N9 ANP 502 A 1 HETATM 23 C C8 ANP . . . C 3 8.368 17.888 29.749 1 34.72 0 C8 ANP 502 A 1 HETATM 24 N N7 ANP . . . C 3 8.468 18.977 29.026 1 32.91 0 N7 ANP 502 A 1 HETATM 25 C C5 ANP . . . C 3 9.498 19.713 29.617 1 32.21 0 C5 ANP 502 A 1 HETATM 26 C C6 ANP . . . C 3 10.054 20.981 29.34 1 34.94 0 C6 ANP 502 A 1 HETATM 27 N N6 ANP . . . C 3 9.654 21.775 28.354 1 33.13 0 N6 ANP 502 A 1 HETATM 28 N N1 ANP . . . C 3 11.067 21.416 30.128 1 35.86 0 N1 ANP 502 A 1 HETATM 29 C C2 ANP . . . C 3 11.45 20.644 31.156 1 34.09 0 C2 ANP 502 A 1 HETATM 30 N N3 ANP . . . C 3 11.012 19.439 31.517 1 34.25 0 N3 ANP 502 A 1 HETATM 31 C C4 ANP . . . C 3 10.006 19.038 30.711 1 36.44 0 C4 ANP 502 A 1 HETATM 32 H HNB1 ANP . . . C 3 2.035 14.689 34.233 1 30.02 0 HNB1 ANP 502 A 1 HETATM 33 H "H5'1" ANP . . . C 3 7.525 13.755 30.641 1 31.09 0 "H5'1" ANP 502 A 1 HETATM 34 H "H5'2" ANP . . . C 3 6.573 13.633 31.925 1 31.08 0 "H5'2" ANP 502 A 1 HETATM 35 H H4' ANP . . . C 3 8.544 14.38 32.733 1 30.63 0 H4' ANP 502 A 1 HETATM 36 H H3' ANP . . . C 3 6.807 16.654 32.652 1 31.91 0 H3' ANP 502 A 1 HETATM 37 H H2' ANP . . . C 3 8.553 18.004 33.309 1 33.12 0 H2' ANP 502 A 1 HETATM 38 H H1' ANP . . . C 3 10.452 16.789 31.974 1 31.92 0 H1' ANP 502 A 1 HETATM 39 H H8 ANP . . . C 3 7.739 17.209 29.573 1 33.67 0 H8 ANP 502 A 1 HETATM 40 H HN61 ANP . . . C 3 10.044 22.551 28.234 1 33.68 0 HN61 ANP 502 A 1 HETATM 41 H HN62 ANP . . . C 3 9.001 21.519 27.827 1 33.67 0 HN62 ANP 502 A 1 HETATM 42 H H2 ANP . . . C 3 12.161 20.986 31.674 1 34.52 0 H2 ANP 502 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 357 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 42 #