data_7QG7 # _model_server_result.job_id 9z_vVAxQ5ykIQ0N6ksV9wQ _model_server_result.datetime_utc '2024-11-13 07:50:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qg7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7QG7 # _exptl.entry_id 7QG7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 291.263 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QG7 _cell.length_a 29.84 _cell.length_b 73.87 _cell.length_c 135.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QG7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab (z,x,y)' _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C12 H13 N5 O4' _chem_comp.formula_weight 291.263 _chem_comp.id U08 _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Remdesivir, reacted form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C6 U08 sing 339 n n O3 C3 U08 sing 340 n n C6 C4 U08 sing 341 n n C3 C4 U08 sing 342 n n C3 C2 U08 sing 343 n n C4 O1 U08 sing 344 n n C2 O2 U08 sing 345 n n C2 C1 U08 sing 346 n n O1 C1 U08 sing 347 n n C1 C8 U08 sing 348 n n C1 C5 U08 sing 349 n n C8 N3 U08 trip 350 n n C5 C7 U08 doub 351 n y C5 N1 U08 sing 352 n y C7 C10 U08 sing 353 n y N2 N1 U08 sing 354 n y N2 C12 U08 doub 355 n y N1 C9 U08 sing 356 n y C12 N4 U08 sing 357 n y C10 C9 U08 doub 358 n y C9 C11 U08 sing 359 n y N4 C11 U08 doub 360 n y C11 N5 U08 sing 361 n n C6 H1 U08 sing 362 n n C6 H2 U08 sing 363 n n C2 H3 U08 sing 364 n n C4 H4 U08 sing 365 n n O2 H5 U08 sing 366 n n O4 H6 U08 sing 367 n n C7 H7 U08 sing 368 n n C10 H8 U08 sing 369 n n C12 H9 U08 sing 370 n n C3 H10 U08 sing 371 n n N5 H11 U08 sing 372 n n N5 H12 U08 sing 373 n n O3 H13 U08 sing 374 n n # _atom_sites.entry_id 7QG7 _atom_sites.fract_transf_matrix[1][1] 0.033512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007374 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 U08 A 1 201 201 U08 NOR . D 3 EDO A 1 202 301 EDO EDO . E 3 EDO A 1 203 401 EDO EDO . F 2 U08 B 1 201 201 U08 NOR . G 3 EDO B 1 202 301 EDO EDO . H 3 EDO B 1 203 401 EDO EDO . I 3 EDO B 1 204 501 EDO EDO . J 4 HOH A 1 301 162 HOH HOH . J 4 HOH A 2 302 159 HOH HOH . J 4 HOH A 3 303 156 HOH HOH . J 4 HOH A 4 304 90 HOH HOH . J 4 HOH A 5 305 103 HOH HOH . J 4 HOH A 6 306 61 HOH HOH . J 4 HOH A 7 307 115 HOH HOH . J 4 HOH A 8 308 37 HOH HOH . J 4 HOH A 9 309 60 HOH HOH . J 4 HOH A 10 310 34 HOH HOH . J 4 HOH A 11 311 139 HOH HOH . J 4 HOH A 12 312 121 HOH HOH . J 4 HOH A 13 313 69 HOH HOH . J 4 HOH A 14 314 134 HOH HOH . J 4 HOH A 15 315 38 HOH HOH . J 4 HOH A 16 316 104 HOH HOH . J 4 HOH A 17 317 117 HOH HOH . J 4 HOH A 18 318 68 HOH HOH . J 4 HOH A 19 319 106 HOH HOH . J 4 HOH A 20 320 72 HOH HOH . J 4 HOH A 21 321 92 HOH HOH . J 4 HOH A 22 322 59 HOH HOH . J 4 HOH A 23 323 42 HOH HOH . J 4 HOH A 24 324 93 HOH HOH . J 4 HOH A 25 325 161 HOH HOH . J 4 HOH A 26 326 12 HOH HOH . J 4 HOH A 27 327 148 HOH HOH . J 4 HOH A 28 328 63 HOH HOH . J 4 HOH A 29 329 62 HOH HOH . J 4 HOH A 30 330 31 HOH HOH . J 4 HOH A 31 331 66 HOH HOH . J 4 HOH A 32 332 73 HOH HOH . J 4 HOH A 33 333 75 HOH HOH . J 4 HOH A 34 334 3 HOH HOH . J 4 HOH A 35 335 11 HOH HOH . J 4 HOH A 36 336 15 HOH HOH . J 4 HOH A 37 337 40 HOH HOH . J 4 HOH A 38 338 87 HOH HOH . J 4 HOH A 39 339 167 HOH HOH . J 4 HOH A 40 340 96 HOH HOH . J 4 HOH A 41 341 64 HOH HOH . J 4 HOH A 42 342 35 HOH HOH . J 4 HOH A 43 343 95 HOH HOH . J 4 HOH A 44 344 77 HOH HOH . J 4 HOH A 45 345 13 HOH HOH . J 4 HOH A 46 346 102 HOH HOH . J 4 HOH A 47 347 130 HOH HOH . J 4 HOH A 48 348 114 HOH HOH . J 4 HOH A 49 349 164 HOH HOH . J 4 HOH A 50 350 109 HOH HOH . J 4 HOH A 51 351 70 HOH HOH . J 4 HOH A 52 352 107 HOH HOH . J 4 HOH A 53 353 81 HOH HOH . J 4 HOH A 54 354 65 HOH HOH . J 4 HOH A 55 355 97 HOH HOH . J 4 HOH A 56 356 58 HOH HOH . J 4 HOH A 57 357 91 HOH HOH . J 4 HOH A 58 358 57 HOH HOH . J 4 HOH A 59 359 39 HOH HOH . J 4 HOH A 60 360 47 HOH HOH . J 4 HOH A 61 361 84 HOH HOH . J 4 HOH A 62 362 140 HOH HOH . J 4 HOH A 63 363 169 HOH HOH . J 4 HOH A 64 364 125 HOH HOH . J 4 HOH A 65 365 67 HOH HOH . J 4 HOH A 66 366 36 HOH HOH . J 4 HOH A 67 367 158 HOH HOH . J 4 HOH A 68 368 20 HOH HOH . J 4 HOH A 69 369 30 HOH HOH . J 4 HOH A 70 370 151 HOH HOH . J 4 HOH A 71 371 133 HOH HOH . J 4 HOH A 72 372 152 HOH HOH . J 4 HOH A 73 373 83 HOH HOH . J 4 HOH A 74 374 150 HOH HOH . J 4 HOH A 75 375 166 HOH HOH . J 4 HOH A 76 376 154 HOH HOH . J 4 HOH A 77 377 119 HOH HOH . J 4 HOH A 78 378 138 HOH HOH . J 4 HOH A 79 379 124 HOH HOH . K 4 HOH B 1 301 85 HOH HOH . K 4 HOH B 2 302 74 HOH HOH . K 4 HOH B 3 303 43 HOH HOH . K 4 HOH B 4 304 111 HOH HOH . K 4 HOH B 5 305 101 HOH HOH . K 4 HOH B 6 306 26 HOH HOH . K 4 HOH B 7 307 144 HOH HOH . K 4 HOH B 8 308 141 HOH HOH . K 4 HOH B 9 309 45 HOH HOH . K 4 HOH B 10 310 127 HOH HOH . K 4 HOH B 11 311 146 HOH HOH . K 4 HOH B 12 312 82 HOH HOH . K 4 HOH B 13 313 79 HOH HOH . K 4 HOH B 14 314 17 HOH HOH . K 4 HOH B 15 315 128 HOH HOH . K 4 HOH B 16 316 29 HOH HOH . K 4 HOH B 17 317 168 HOH HOH . K 4 HOH B 18 318 100 HOH HOH . K 4 HOH B 19 319 6 HOH HOH . K 4 HOH B 20 320 21 HOH HOH . K 4 HOH B 21 321 54 HOH HOH . K 4 HOH B 22 322 51 HOH HOH . K 4 HOH B 23 323 55 HOH HOH . K 4 HOH B 24 324 53 HOH HOH . K 4 HOH B 25 325 7 HOH HOH . K 4 HOH B 26 326 44 HOH HOH . K 4 HOH B 27 327 155 HOH HOH . K 4 HOH B 28 328 25 HOH HOH . K 4 HOH B 29 329 2 HOH HOH . K 4 HOH B 30 330 98 HOH HOH . K 4 HOH B 31 331 120 HOH HOH . K 4 HOH B 32 332 56 HOH HOH . K 4 HOH B 33 333 143 HOH HOH . K 4 HOH B 34 334 22 HOH HOH . K 4 HOH B 35 335 135 HOH HOH . K 4 HOH B 36 336 112 HOH HOH . K 4 HOH B 37 337 71 HOH HOH . K 4 HOH B 38 338 9 HOH HOH . K 4 HOH B 39 339 76 HOH HOH . K 4 HOH B 40 340 89 HOH HOH . K 4 HOH B 41 341 78 HOH HOH . K 4 HOH B 42 342 23 HOH HOH . K 4 HOH B 43 343 41 HOH HOH . K 4 HOH B 44 344 131 HOH HOH . K 4 HOH B 45 345 163 HOH HOH . K 4 HOH B 46 346 126 HOH HOH . K 4 HOH B 47 347 86 HOH HOH . K 4 HOH B 48 348 32 HOH HOH . K 4 HOH B 49 349 33 HOH HOH . K 4 HOH B 50 350 48 HOH HOH . K 4 HOH B 51 351 157 HOH HOH . K 4 HOH B 52 352 160 HOH HOH . K 4 HOH B 53 353 10 HOH HOH . K 4 HOH B 54 354 8 HOH HOH . K 4 HOH B 55 355 16 HOH HOH . K 4 HOH B 56 356 116 HOH HOH . K 4 HOH B 57 357 88 HOH HOH . K 4 HOH B 58 358 19 HOH HOH . K 4 HOH B 59 359 132 HOH HOH . K 4 HOH B 60 360 123 HOH HOH . K 4 HOH B 61 361 5 HOH HOH . K 4 HOH B 62 362 24 HOH HOH . K 4 HOH B 63 363 145 HOH HOH . K 4 HOH B 64 364 149 HOH HOH . K 4 HOH B 65 365 110 HOH HOH . K 4 HOH B 66 366 129 HOH HOH . K 4 HOH B 67 367 137 HOH HOH . K 4 HOH B 68 368 4 HOH HOH . K 4 HOH B 69 369 46 HOH HOH . K 4 HOH B 70 370 105 HOH HOH . K 4 HOH B 71 371 52 HOH HOH . K 4 HOH B 72 372 153 HOH HOH . K 4 HOH B 73 373 113 HOH HOH . K 4 HOH B 74 374 94 HOH HOH . K 4 HOH B 75 375 165 HOH HOH . K 4 HOH B 76 376 136 HOH HOH . K 4 HOH B 77 377 170 HOH HOH . K 4 HOH B 78 378 122 HOH HOH . K 4 HOH B 79 379 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 U08 . . . F 2 7.289 -21.158 -27.442 1 21.82 ? C8 U08 201 B 1 HETATM 2 C C5 U08 . . . F 2 7.374 -18.974 -26.473 1 18.82 ? C5 U08 201 B 1 HETATM 3 C C6 U08 . . . F 2 5.55 -21.034 -23.276 1 27.03 ? C6 U08 201 B 1 HETATM 4 N N1 U08 . . . F 2 6.49 -18.23 -27.234 1 21.95 ? N1 U08 201 B 1 HETATM 5 C C2 U08 . . . F 2 8.139 -21.044 -25.103 1 20.12 ? C2 U08 201 B 1 HETATM 6 N N3 U08 . . . F 2 7.392 -21.677 -28.452 1 21.35 ? N3 U08 201 B 1 HETATM 7 C C4 U08 . . . F 2 5.921 -21.688 -24.589 1 24.59 ? C4 U08 201 B 1 HETATM 8 O O2 U08 . . . F 2 9.393 -21.41 -25.661 1 23.16 ? O2 U08 201 B 1 HETATM 9 N N2 U08 . . . F 2 5.355 -18.728 -27.826 1 20.87 ? N2 U08 201 B 1 HETATM 10 O O4 U08 . . . F 2 5.413 -22.017 -22.257 1 31.72 ? O4 U08 201 B 1 HETATM 11 N N4 U08 . . . F 2 4.916 -16.505 -28.601 1 21.11 ? N4 U08 201 B 1 HETATM 12 C C7 U08 . . . F 2 8.374 -18.101 -26.06 1 18.32 ? C7 U08 201 B 1 HETATM 13 C C1 U08 . . . F 2 7.189 -20.442 -26.157 1 20.87 ? C1 U08 201 B 1 HETATM 14 C C10 U08 . . . F 2 8.085 -16.824 -26.567 1 17.56 ? C10 U08 201 B 1 HETATM 15 C C11 U08 . . . F 2 6.04 -16.021 -28.032 1 22.13 ? C11 U08 201 B 1 HETATM 16 C C12 U08 . . . F 2 4.645 -17.812 -28.47 1 19.53 ? C12 U08 201 B 1 HETATM 17 C C3 U08 . . . F 2 7.347 -22.236 -24.614 1 24.46 ? C3 U08 201 B 1 HETATM 18 C C9 U08 . . . F 2 6.889 -16.915 -27.302 1 19.24 ? C9 U08 201 B 1 HETATM 19 N N5 U08 . . . F 2 6.317 -14.72 -28.173 1 25.41 ? N5 U08 201 B 1 HETATM 20 O O1 U08 . . . F 2 5.886 -20.705 -25.638 1 26.22 ? O1 U08 201 B 1 HETATM 21 O O3 U08 . . . F 2 7.475 -23.359 -25.48 1 24.54 ? O3 U08 201 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 21 #