data_7QGP # _model_server_result.job_id redC3i8eorb7JBVBP3ntuw _model_server_result.datetime_utc '2025-01-10 17:40:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7QGP # _exptl.entry_id 7QGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 492.957 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(4-chloranyl-2-methyl-phenyl)methyl]-3-(7,10-dioxa-13,17,18,21-tetrazatetracyclo[12.5.2.1^{2,6}.0^{17,20}]docosa-1(20),2(22),3,5,14(21),15,18-heptaen-5-yl)urea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.79 _cell.angle_gamma 90 _cell.entry_id 7QGP _cell.length_a 93.312 _cell.length_b 61.839 _cell.length_c 56.808 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 191 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 206 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 191 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 206 _struct_conn.ptnr2_symmetry 2_455 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.835 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C25 H25 Cl N6 O3' _chem_comp.formula_weight 492.957 _chem_comp.id DJ8 _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(4-chloranyl-2-methyl-phenyl)methyl]-3-(7,10-dioxa-13,17,18,21-tetrazatetracyclo[12.5.2.1^{2,6}.0^{17,20}]docosa-1(20),2(22),3,5,14(21),15,18-heptaen-5-yl)urea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 DJ8 doub 83 n y C4 C3 DJ8 sing 84 n y CL C3 DJ8 sing 85 n n O2 C16 DJ8 sing 86 n n O2 C17 DJ8 sing 87 n n C5 C6 DJ8 sing 88 n y C16 C15 DJ8 sing 89 n n C3 C2 DJ8 doub 90 n y C15 O1 DJ8 sing 91 n n C17 C18 DJ8 sing 92 n n C18 N2 DJ8 sing 93 n n C6 C7 DJ8 sing 94 n n C6 C1 DJ8 doub 95 n y O1 C14 DJ8 sing 96 n n N C7 DJ8 sing 97 n n N C8 DJ8 sing 98 n n C2 C1 DJ8 sing 99 n y C1 C DJ8 sing 100 n n N1 C8 DJ8 sing 101 n n N1 C9 DJ8 sing 102 n n N2 C19 DJ8 sing 103 n n C14 C9 DJ8 doub 104 n y C14 C13 DJ8 sing 105 n y C8 O DJ8 doub 106 n n C9 C10 DJ8 sing 107 n y C13 C12 DJ8 doub 108 n y C19 N5 DJ8 doub 109 n y C19 C20 DJ8 sing 110 n y N5 C24 DJ8 sing 111 n y C10 C11 DJ8 doub 112 n y C12 C11 DJ8 sing 113 n y C12 C23 DJ8 sing 114 n n C20 C21 DJ8 doub 115 n y C24 C23 DJ8 doub 116 n y C24 N3 DJ8 sing 117 n y C23 C22 DJ8 sing 118 n y C21 N3 DJ8 sing 119 n y N3 N4 DJ8 sing 120 n y C22 N4 DJ8 doub 121 n y N1 H1 DJ8 sing 122 n n C7 H2 DJ8 sing 123 n n C7 H3 DJ8 sing 124 n n N2 H4 DJ8 sing 125 n n C5 H5 DJ8 sing 126 n n C4 H6 DJ8 sing 127 n n C2 H7 DJ8 sing 128 n n N H8 DJ8 sing 129 n n C H9 DJ8 sing 130 n n C H10 DJ8 sing 131 n n C H11 DJ8 sing 132 n n C13 H12 DJ8 sing 133 n n C15 H13 DJ8 sing 134 n n C15 H14 DJ8 sing 135 n n C16 H15 DJ8 sing 136 n n C16 H16 DJ8 sing 137 n n C17 H17 DJ8 sing 138 n n C17 H18 DJ8 sing 139 n n C18 H19 DJ8 sing 140 n n C18 H20 DJ8 sing 141 n n C21 H21 DJ8 sing 142 n n C20 H22 DJ8 sing 143 n n C22 H23 DJ8 sing 144 n n C11 H24 DJ8 sing 145 n n C10 H25 DJ8 sing 146 n n # _atom_sites.entry_id 7QGP _atom_sites.fract_transf_matrix[1][1] 0.010717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002433 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DJ8 A 1 401 401 DJ8 XXX . C 3 EDO A 1 402 402 EDO EDO . D 4 CL A 1 403 1 CL CL . E 5 HOH A 1 501 155 HOH HOH . E 5 HOH A 2 502 160 HOH HOH . E 5 HOH A 3 503 106 HOH HOH . E 5 HOH A 4 504 96 HOH HOH . E 5 HOH A 5 505 109 HOH HOH . E 5 HOH A 6 506 107 HOH HOH . E 5 HOH A 7 507 85 HOH HOH . E 5 HOH A 8 508 145 HOH HOH . E 5 HOH A 9 509 143 HOH HOH . E 5 HOH A 10 510 48 HOH HOH . E 5 HOH A 11 511 45 HOH HOH . E 5 HOH A 12 512 98 HOH HOH . E 5 HOH A 13 513 84 HOH HOH . E 5 HOH A 14 514 69 HOH HOH . E 5 HOH A 15 515 50 HOH HOH . E 5 HOH A 16 516 132 HOH HOH . E 5 HOH A 17 517 82 HOH HOH . E 5 HOH A 18 518 144 HOH HOH . E 5 HOH A 19 519 12 HOH HOH . E 5 HOH A 20 520 135 HOH HOH . E 5 HOH A 21 521 93 HOH HOH . E 5 HOH A 22 522 59 HOH HOH . E 5 HOH A 23 523 63 HOH HOH . E 5 HOH A 24 524 102 HOH HOH . E 5 HOH A 25 525 73 HOH HOH . E 5 HOH A 26 526 119 HOH HOH . E 5 HOH A 27 527 154 HOH HOH . E 5 HOH A 28 528 122 HOH HOH . E 5 HOH A 29 529 6 HOH HOH . E 5 HOH A 30 530 36 HOH HOH . E 5 HOH A 31 531 62 HOH HOH . E 5 HOH A 32 532 19 HOH HOH . E 5 HOH A 33 533 32 HOH HOH . E 5 HOH A 34 534 7 HOH HOH . E 5 HOH A 35 535 159 HOH HOH . E 5 HOH A 36 536 152 HOH HOH . E 5 HOH A 37 537 16 HOH HOH . E 5 HOH A 38 538 29 HOH HOH . E 5 HOH A 39 539 165 HOH HOH . E 5 HOH A 40 540 133 HOH HOH . E 5 HOH A 41 541 55 HOH HOH . E 5 HOH A 42 542 15 HOH HOH . E 5 HOH A 43 543 95 HOH HOH . E 5 HOH A 44 544 26 HOH HOH . E 5 HOH A 45 545 56 HOH HOH . E 5 HOH A 46 546 65 HOH HOH . E 5 HOH A 47 547 24 HOH HOH . E 5 HOH A 48 548 70 HOH HOH . E 5 HOH A 49 549 30 HOH HOH . E 5 HOH A 50 550 38 HOH HOH . E 5 HOH A 51 551 103 HOH HOH . E 5 HOH A 52 552 125 HOH HOH . E 5 HOH A 53 553 13 HOH HOH . E 5 HOH A 54 554 9 HOH HOH . E 5 HOH A 55 555 99 HOH HOH . E 5 HOH A 56 556 40 HOH HOH . E 5 HOH A 57 557 3 HOH HOH . E 5 HOH A 58 558 64 HOH HOH . E 5 HOH A 59 559 126 HOH HOH . E 5 HOH A 60 560 51 HOH HOH . E 5 HOH A 61 561 58 HOH HOH . E 5 HOH A 62 562 115 HOH HOH . E 5 HOH A 63 563 22 HOH HOH . E 5 HOH A 64 564 11 HOH HOH . E 5 HOH A 65 565 49 HOH HOH . E 5 HOH A 66 566 113 HOH HOH . E 5 HOH A 67 567 158 HOH HOH . E 5 HOH A 68 568 111 HOH HOH . E 5 HOH A 69 569 153 HOH HOH . E 5 HOH A 70 570 108 HOH HOH . E 5 HOH A 71 571 39 HOH HOH . E 5 HOH A 72 572 71 HOH HOH . E 5 HOH A 73 573 67 HOH HOH . E 5 HOH A 74 574 27 HOH HOH . E 5 HOH A 75 575 127 HOH HOH . E 5 HOH A 76 576 23 HOH HOH . E 5 HOH A 77 577 75 HOH HOH . E 5 HOH A 78 578 4 HOH HOH . E 5 HOH A 79 579 78 HOH HOH . E 5 HOH A 80 580 88 HOH HOH . E 5 HOH A 81 581 128 HOH HOH . E 5 HOH A 82 582 87 HOH HOH . E 5 HOH A 83 583 76 HOH HOH . E 5 HOH A 84 584 31 HOH HOH . E 5 HOH A 85 585 60 HOH HOH . E 5 HOH A 86 586 101 HOH HOH . E 5 HOH A 87 587 91 HOH HOH . E 5 HOH A 88 588 92 HOH HOH . E 5 HOH A 89 589 5 HOH HOH . E 5 HOH A 90 590 20 HOH HOH . E 5 HOH A 91 591 18 HOH HOH . E 5 HOH A 92 592 142 HOH HOH . E 5 HOH A 93 593 114 HOH HOH . E 5 HOH A 94 594 2 HOH HOH . E 5 HOH A 95 595 151 HOH HOH . E 5 HOH A 96 596 21 HOH HOH . E 5 HOH A 97 597 105 HOH HOH . E 5 HOH A 98 598 86 HOH HOH . E 5 HOH A 99 599 61 HOH HOH . E 5 HOH A 100 600 112 HOH HOH . E 5 HOH A 101 601 77 HOH HOH . E 5 HOH A 102 602 44 HOH HOH . E 5 HOH A 103 603 52 HOH HOH . E 5 HOH A 104 604 97 HOH HOH . E 5 HOH A 105 605 68 HOH HOH . E 5 HOH A 106 606 89 HOH HOH . E 5 HOH A 107 607 164 HOH HOH . E 5 HOH A 108 608 121 HOH HOH . E 5 HOH A 109 609 34 HOH HOH . E 5 HOH A 110 610 37 HOH HOH . E 5 HOH A 111 611 1 HOH HOH . E 5 HOH A 112 612 79 HOH HOH . E 5 HOH A 113 613 53 HOH HOH . E 5 HOH A 114 614 54 HOH HOH . E 5 HOH A 115 615 10 HOH HOH . E 5 HOH A 116 616 90 HOH HOH . E 5 HOH A 117 617 136 HOH HOH . E 5 HOH A 118 618 134 HOH HOH . E 5 HOH A 119 619 118 HOH HOH . E 5 HOH A 120 620 57 HOH HOH . E 5 HOH A 121 621 150 HOH HOH . E 5 HOH A 122 622 14 HOH HOH . E 5 HOH A 123 623 46 HOH HOH . E 5 HOH A 124 624 72 HOH HOH . E 5 HOH A 125 625 137 HOH HOH . E 5 HOH A 126 626 81 HOH HOH . E 5 HOH A 127 627 94 HOH HOH . E 5 HOH A 128 628 83 HOH HOH . E 5 HOH A 129 629 104 HOH HOH . E 5 HOH A 130 630 25 HOH HOH . E 5 HOH A 131 631 43 HOH HOH . E 5 HOH A 132 632 80 HOH HOH . E 5 HOH A 133 633 141 HOH HOH . E 5 HOH A 134 634 35 HOH HOH . E 5 HOH A 135 635 33 HOH HOH . E 5 HOH A 136 636 156 HOH HOH . E 5 HOH A 137 637 131 HOH HOH . E 5 HOH A 138 638 100 HOH HOH . E 5 HOH A 139 639 138 HOH HOH . E 5 HOH A 140 640 116 HOH HOH . E 5 HOH A 141 641 139 HOH HOH . E 5 HOH A 142 642 41 HOH HOH . E 5 HOH A 143 643 140 HOH HOH . E 5 HOH A 144 644 161 HOH HOH . E 5 HOH A 145 645 162 HOH HOH . E 5 HOH A 146 646 117 HOH HOH . E 5 HOH A 147 647 110 HOH HOH . E 5 HOH A 148 648 148 HOH HOH . E 5 HOH A 149 649 149 HOH HOH . E 5 HOH A 150 650 42 HOH HOH . E 5 HOH A 151 651 124 HOH HOH . E 5 HOH A 152 652 17 HOH HOH . E 5 HOH A 153 653 147 HOH HOH . E 5 HOH A 154 654 120 HOH HOH . E 5 HOH A 155 655 129 HOH HOH . E 5 HOH A 156 656 130 HOH HOH . E 5 HOH A 157 657 146 HOH HOH . E 5 HOH A 158 658 28 HOH HOH . E 5 HOH A 159 659 47 HOH HOH . E 5 HOH A 160 660 8 HOH HOH . E 5 HOH A 161 661 66 HOH HOH . E 5 HOH A 162 662 74 HOH HOH . E 5 HOH A 163 663 157 HOH HOH . E 5 HOH A 164 664 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DJ8 . . . B 2 -28.32 4.402 11.237 1 30.25 ? N1 DJ8 401 A 1 HETATM 2 C C7 DJ8 . . . B 2 -31.875 5.258 10.95 1 33.11 ? C7 DJ8 401 A 1 HETATM 3 C C8 DJ8 . . . B 2 -29.603 4.623 11.67 1 30.64 ? C8 DJ8 401 A 1 HETATM 4 N N2 DJ8 . . . B 2 -20.668 1.234 11.257 1 29.61 ? N2 DJ8 401 A 1 HETATM 5 C C9 DJ8 . . . B 2 -27.245 4.025 12.086 1 29.25 ? C9 DJ8 401 A 1 HETATM 6 O O1 DJ8 . . . B 2 -26.642 2.442 10.47 1 28.41 ? O1 DJ8 401 A 1 HETATM 7 C C1 DJ8 . . . B 2 -32.351 7.737 11.237 1 38.12 ? C1 DJ8 401 A 1 HETATM 8 C C5 DJ8 . . . B 2 -32.921 6.657 9.151 1 37.23 ? C5 DJ8 401 A 1 HETATM 9 C C6 DJ8 . . . B 2 -32.396 6.581 10.439 1 35.83 ? C6 DJ8 401 A 1 HETATM 10 N N3 DJ8 . . . B 2 -21.704 2.49 14.935 1 29.52 ? N3 DJ8 401 A 1 HETATM 11 C C4 DJ8 . . . B 2 -33.407 7.844 8.644 1 39.78 ? C4 DJ8 401 A 1 HETATM 12 C C3 DJ8 . . . B 2 -33.374 8.966 9.436 1 41.54 ? C3 DJ8 401 A 1 HETATM 13 C C2 DJ8 . . . B 2 -32.847 8.929 10.711 1 40.38 ? C2 DJ8 401 A 1 HETATM 14 N N4 DJ8 . . . B 2 -22.251 3.048 16.069 1 29.53 ? N4 DJ8 401 A 1 HETATM 15 O O DJ8 . . . B 2 -29.976 4.351 12.805 1 28.34 ? O DJ8 401 A 1 HETATM 16 N N DJ8 . . . B 2 -30.45 5.067 10.708 1 32.29 ? N DJ8 401 A 1 HETATM 17 CL CL DJ8 . . . B 2 -34.089 10.444 8.852 1 47.64 ? CL DJ8 401 A 1 HETATM 18 C C DJ8 . . . B 2 -31.787 7.719 12.635 1 37.64 ? C DJ8 401 A 1 HETATM 19 C C14 DJ8 . . . B 2 -26.324 3.075 11.638 1 27.92 ? C14 DJ8 401 A 1 HETATM 20 C C13 DJ8 . . . B 2 -25.183 2.801 12.368 1 27.76 ? C13 DJ8 401 A 1 HETATM 21 C C15 DJ8 . . . B 2 -25.757 1.405 9.991 1 27.98 ? C15 DJ8 401 A 1 HETATM 22 C C16 DJ8 . . . B 2 -24.512 1.997 9.373 1 29.03 ? C16 DJ8 401 A 1 HETATM 23 O O2 DJ8 . . . B 2 -23.602 0.957 9.004 1 29.31 ? O2 DJ8 401 A 1 HETATM 24 C C17 DJ8 . . . B 2 -22.683 0.497 10.013 1 28.12 ? C17 DJ8 401 A 1 HETATM 25 C C18 DJ8 . . . B 2 -21.503 1.435 10.076 1 29.42 ? C18 DJ8 401 A 1 HETATM 26 C C19 DJ8 . . . B 2 -20.978 1.675 12.502 1 29.66 ? C19 DJ8 401 A 1 HETATM 27 N N5 DJ8 . . . B 2 -22.176 2.237 12.624 1 28.68 ? N5 DJ8 401 A 1 HETATM 28 C C24 DJ8 . . . B 2 -22.555 2.539 13.874 1 28.81 ? C24 DJ8 401 A 1 HETATM 29 C C21 DJ8 . . . B 2 -20.454 1.971 14.801 1 30.34 ? C21 DJ8 401 A 1 HETATM 30 C C20 DJ8 . . . B 2 -20.06 1.533 13.585 1 30.25 ? C20 DJ8 401 A 1 HETATM 31 C C23 DJ8 . . . B 2 -23.719 3.174 14.333 1 28.61 ? C23 DJ8 401 A 1 HETATM 32 C C22 DJ8 . . . B 2 -23.454 3.447 15.683 1 29.12 ? C22 DJ8 401 A 1 HETATM 33 C C12 DJ8 . . . B 2 -24.946 3.467 13.564 1 28.22 ? C12 DJ8 401 A 1 HETATM 34 C C11 DJ8 . . . B 2 -25.872 4.397 14.021 1 28.9 ? C11 DJ8 401 A 1 HETATM 35 C C10 DJ8 . . . B 2 -27.017 4.672 13.296 1 28.53 ? C10 DJ8 401 A 1 # _model_server_stats.io_time_ms 117 _model_server_stats.parse_time_ms 79 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 1315 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 35 #