data_7QHE # _model_server_result.job_id lthYxyW-uw8TYgc1Arowxg _model_server_result.datetime_utc '2024-11-06 01:42:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":602}' # _entry.id 7QHE # _exptl.entry_id 7QHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QHE _cell.length_a 154.505 _cell.length_b 154.505 _cell.length_c 127.52 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 605 NAG 2 n B NAG 2 B 2 NAG A 604 NAG 2 n B FUC 3 B 3 FUC A 606 FUC 2 n C NAG 1 C 1 NAG A 607 NAG 2 n C NAG 2 C 2 NAG A 608 NAG 2 n C FUC 3 C 3 FUC A 609 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 D C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 E C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 A ND2 ASN 241 A ASN 241 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale4 A ND2 ASN 256 A ASN 256 1_555 F C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale5 A ND2 ASN 341 A ASN 341 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 485 A ASN 485 1_555 G C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale7 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale9 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale10 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 394 n n C1 O1 NAG sing 395 n n C1 O5 NAG sing 396 n n C1 H1 NAG sing 397 n n C2 C3 NAG sing 398 n n C2 N2 NAG sing 399 n n C2 H2 NAG sing 400 n n C3 C4 NAG sing 401 n n C3 O3 NAG sing 402 n n C3 H3 NAG sing 403 n n C4 C5 NAG sing 404 n n C4 O4 NAG sing 405 n n C4 H4 NAG sing 406 n n C5 C6 NAG sing 407 n n C5 O5 NAG sing 408 n n C5 H5 NAG sing 409 n n C6 O6 NAG sing 410 n n C6 H61 NAG sing 411 n n C6 H62 NAG sing 412 n n C7 C8 NAG sing 413 n n C7 N2 NAG sing 414 n n C7 O7 NAG doub 415 n n C8 H81 NAG sing 416 n n C8 H82 NAG sing 417 n n C8 H83 NAG sing 418 n n N2 HN2 NAG sing 419 n n O1 HO1 NAG sing 420 n n O3 HO3 NAG sing 421 n n O4 HO4 NAG sing 422 n n O6 HO6 NAG sing 423 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7QHE _atom_sites.fract_transf_matrix[1][1] 0.006472 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007842 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG A 1 601 601 NAG NAG . E 3 NAG A 1 602 603 NAG NAG . F 3 NAG A 1 603 610 NAG NAG . G 3 NAG A 1 604 611 NAG NAG . H 4 MES A 1 605 619 MES MES . I 5 C4I A 1 606 620 C4I LIG . J 6 GOL A 1 607 621 GOL GOL . K 7 SO4 A 1 608 2 SO4 SO4 . L 7 SO4 A 1 609 3 SO4 SO4 . M 7 SO4 A 1 610 4 SO4 SO4 . N 8 CL A 1 611 1 CL CL . O 8 CL A 1 612 2 CL CL . P 8 CL A 1 613 3 CL CL . Q 8 CL A 1 614 4 CL CL . R 8 CL A 1 615 5 CL CL . S 8 CL A 1 616 6 CL CL . T 8 CL A 1 617 7 CL CL . U 9 HOH A 1 701 71 HOH HOH . U 9 HOH A 2 702 117 HOH HOH . U 9 HOH A 3 703 118 HOH HOH . U 9 HOH A 4 704 54 HOH HOH . U 9 HOH A 5 705 67 HOH HOH . U 9 HOH A 6 706 41 HOH HOH . U 9 HOH A 7 707 83 HOH HOH . U 9 HOH A 8 708 131 HOH HOH . U 9 HOH A 9 709 132 HOH HOH . U 9 HOH A 10 710 49 HOH HOH . U 9 HOH A 11 711 124 HOH HOH . U 9 HOH A 12 712 115 HOH HOH . U 9 HOH A 13 713 110 HOH HOH . U 9 HOH A 14 714 57 HOH HOH . U 9 HOH A 15 715 125 HOH HOH . U 9 HOH A 16 716 45 HOH HOH . U 9 HOH A 17 717 114 HOH HOH . U 9 HOH A 18 718 100 HOH HOH . U 9 HOH A 19 719 20 HOH HOH . U 9 HOH A 20 720 18 HOH HOH . U 9 HOH A 21 721 16 HOH HOH . U 9 HOH A 22 722 47 HOH HOH . U 9 HOH A 23 723 89 HOH HOH . U 9 HOH A 24 724 43 HOH HOH . U 9 HOH A 25 725 48 HOH HOH . U 9 HOH A 26 726 61 HOH HOH . U 9 HOH A 27 727 123 HOH HOH . U 9 HOH A 28 728 37 HOH HOH . U 9 HOH A 29 729 4 HOH HOH . U 9 HOH A 30 730 72 HOH HOH . U 9 HOH A 31 731 64 HOH HOH . U 9 HOH A 32 732 23 HOH HOH . U 9 HOH A 33 733 42 HOH HOH . U 9 HOH A 34 734 35 HOH HOH . U 9 HOH A 35 735 38 HOH HOH . U 9 HOH A 36 736 13 HOH HOH . U 9 HOH A 37 737 33 HOH HOH . U 9 HOH A 38 738 81 HOH HOH . U 9 HOH A 39 739 92 HOH HOH . U 9 HOH A 40 740 2 HOH HOH . U 9 HOH A 41 741 14 HOH HOH . U 9 HOH A 42 742 12 HOH HOH . U 9 HOH A 43 743 74 HOH HOH . U 9 HOH A 44 744 21 HOH HOH . U 9 HOH A 45 745 98 HOH HOH . U 9 HOH A 46 746 51 HOH HOH . U 9 HOH A 47 747 78 HOH HOH . U 9 HOH A 48 748 25 HOH HOH . U 9 HOH A 49 749 40 HOH HOH . U 9 HOH A 50 750 63 HOH HOH . U 9 HOH A 51 751 34 HOH HOH . U 9 HOH A 52 752 1 HOH HOH . U 9 HOH A 53 753 46 HOH HOH . U 9 HOH A 54 754 8 HOH HOH . U 9 HOH A 55 755 62 HOH HOH . U 9 HOH A 56 756 69 HOH HOH . U 9 HOH A 57 757 103 HOH HOH . U 9 HOH A 58 758 3 HOH HOH . U 9 HOH A 59 759 106 HOH HOH . U 9 HOH A 60 760 19 HOH HOH . U 9 HOH A 61 761 56 HOH HOH . U 9 HOH A 62 762 50 HOH HOH . U 9 HOH A 63 763 15 HOH HOH . U 9 HOH A 64 764 134 HOH HOH . U 9 HOH A 65 765 11 HOH HOH . U 9 HOH A 66 766 101 HOH HOH . U 9 HOH A 67 767 130 HOH HOH . U 9 HOH A 68 768 75 HOH HOH . U 9 HOH A 69 769 59 HOH HOH . U 9 HOH A 70 770 10 HOH HOH . U 9 HOH A 71 771 39 HOH HOH . U 9 HOH A 72 772 60 HOH HOH . U 9 HOH A 73 773 32 HOH HOH . U 9 HOH A 74 774 107 HOH HOH . U 9 HOH A 75 775 6 HOH HOH . U 9 HOH A 76 776 44 HOH HOH . U 9 HOH A 77 777 29 HOH HOH . U 9 HOH A 78 778 126 HOH HOH . U 9 HOH A 79 779 24 HOH HOH . U 9 HOH A 80 780 116 HOH HOH . U 9 HOH A 81 781 53 HOH HOH . U 9 HOH A 82 782 135 HOH HOH . U 9 HOH A 83 783 136 HOH HOH . U 9 HOH A 84 784 133 HOH HOH . U 9 HOH A 85 785 79 HOH HOH . U 9 HOH A 86 786 112 HOH HOH . U 9 HOH A 87 787 80 HOH HOH . U 9 HOH A 88 788 88 HOH HOH . U 9 HOH A 89 789 5 HOH HOH . U 9 HOH A 90 790 22 HOH HOH . U 9 HOH A 91 791 108 HOH HOH . U 9 HOH A 92 792 84 HOH HOH . U 9 HOH A 93 793 9 HOH HOH . U 9 HOH A 94 794 36 HOH HOH . U 9 HOH A 95 795 28 HOH HOH . U 9 HOH A 96 796 27 HOH HOH . U 9 HOH A 97 797 7 HOH HOH . U 9 HOH A 98 798 105 HOH HOH . U 9 HOH A 99 799 113 HOH HOH . U 9 HOH A 100 800 30 HOH HOH . U 9 HOH A 101 801 129 HOH HOH . U 9 HOH A 102 802 77 HOH HOH . U 9 HOH A 103 803 65 HOH HOH . U 9 HOH A 104 804 104 HOH HOH . U 9 HOH A 105 805 55 HOH HOH . U 9 HOH A 106 806 91 HOH HOH . U 9 HOH A 107 807 66 HOH HOH . U 9 HOH A 108 808 31 HOH HOH . U 9 HOH A 109 809 73 HOH HOH . U 9 HOH A 110 810 26 HOH HOH . U 9 HOH A 111 811 86 HOH HOH . U 9 HOH A 112 812 102 HOH HOH . U 9 HOH A 113 813 128 HOH HOH . U 9 HOH A 114 814 127 HOH HOH . U 9 HOH A 115 815 95 HOH HOH . U 9 HOH A 116 816 17 HOH HOH . U 9 HOH A 117 817 58 HOH HOH . U 9 HOH A 118 818 76 HOH HOH . U 9 HOH A 119 819 70 HOH HOH . U 9 HOH A 120 820 97 HOH HOH . U 9 HOH A 121 821 121 HOH HOH . U 9 HOH A 122 822 96 HOH HOH . U 9 HOH A 123 823 120 HOH HOH . U 9 HOH A 124 824 99 HOH HOH . U 9 HOH A 125 825 109 HOH HOH . U 9 HOH A 126 826 87 HOH HOH . U 9 HOH A 127 827 111 HOH HOH . U 9 HOH A 128 828 82 HOH HOH . U 9 HOH A 129 829 93 HOH HOH . U 9 HOH A 130 830 85 HOH HOH . U 9 HOH A 131 831 52 HOH HOH . U 9 HOH A 132 832 94 HOH HOH . U 9 HOH A 133 833 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 18.929 5.484 27.058 1 79.5 ? C1 NAG 602 A 1 HETATM 2 C C2 NAG . . . E 3 18.803 4.34 26.032 1 86.31 ? C2 NAG 602 A 1 HETATM 3 C C3 NAG . . . E 3 17.334 3.985 25.792 1 85.87 ? C3 NAG 602 A 1 HETATM 4 C C4 NAG . . . E 3 16.648 3.674 27.117 1 89.29 ? C4 NAG 602 A 1 HETATM 5 C C5 NAG . . . E 3 16.795 4.881 28.044 1 83.04 ? C5 NAG 602 A 1 HETATM 6 C C6 NAG . . . E 3 16.164 4.688 29.406 1 81.65 ? C6 NAG 602 A 1 HETATM 7 C C7 NAG . . . E 3 20.695 4.298 24.466 1 82.44 ? C7 NAG 602 A 1 HETATM 8 C C8 NAG . . . E 3 21.38 3.401 25.459 1 81.14 ? C8 NAG 602 A 1 HETATM 9 N N2 NAG . . . E 3 19.46 4.697 24.785 1 85.58 ? N2 NAG 602 A 1 HETATM 10 O O3 NAG . . . E 3 17.245 2.866 24.917 1 90.63 ? O3 NAG 602 A 1 HETATM 11 O O4 NAG . . . E 3 15.278 3.33 26.915 1 86.09 ? O4 NAG 602 A 1 HETATM 12 O O5 NAG . . . E 3 18.191 5.144 28.262 1 83.52 ? O5 NAG 602 A 1 HETATM 13 O O6 NAG . . . E 3 16.454 5.768 30.286 1 73.27 ? O6 NAG 602 A 1 HETATM 14 O O7 NAG . . . E 3 21.229 4.63 23.414 1 81.79 ? O7 NAG 602 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #