data_7QIF # _model_server_result.job_id pChpbYjcuDYKm002nAEk8Q _model_server_result.datetime_utc '2025-08-05 11:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 7QIF # _exptl.entry_id 7QIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 803.44 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QIF _cell.length_a 67.336 _cell.length_b 67.314 _cell.length_c 138.585 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 203 D CYS 207 1_555 E ZN ZN . D ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc2 A SG CYS 206 D CYS 210 1_555 E ZN ZN . D ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc3 A SG CYS 222 D CYS 226 1_555 E ZN ZN . D ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc4 A ND1 HIS 225 D HIS 229 1_555 E ZN ZN . D ZN 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc5 A NE2 HIS 253 D HIS 257 1_555 C ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc6 A SG CYS 257 D CYS 261 1_555 C ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc7 A ND1 HIS 260 D HIS 264 1_555 C ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc8 A SG CYS 275 D CYS 279 1_555 C ZN ZN . D ZN 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc9 A SG CYS 448 D CYS 452 1_555 D ZN ZN . D ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc10 A SG CYS 473 D CYS 477 1_555 D ZN ZN . D ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc11 A SG CYS 480 D CYS 484 1_555 D ZN ZN . D ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc12 A ND1 HIS 483 D HIS 487 1_555 D ZN ZN . D ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? # _chem_comp.formula 'C21 H30 N10 O18 P3 1' _chem_comp.formula_weight 803.44 _chem_comp.id GTG _chem_comp.mon_nstd_flag . _chem_comp.name "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MRNA CAP ANALOG N7-METHYL GPPPG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A GTG doub 129 n n PA O2A GTG sing 130 n n PA O3A GTG sing 131 n n PA O5D GTG sing 132 n n O2A HOA2 GTG sing 133 n n O3A PB GTG sing 134 n n PB O1B GTG doub 135 n n PB O2B GTG sing 136 n n PB O3B GTG sing 137 n n O2B HOB2 GTG sing 138 n n O3B PG GTG sing 139 n n N9A C8A GTG sing 140 n y N9A C4A GTG sing 141 n y N9A C1D GTG sing 142 n n C8A N7A GTG doub 143 n y C8A H8 GTG sing 144 n n N7A C7X GTG sing 145 n n N7A C5A GTG sing 146 n y C7X HC71 GTG sing 147 n n C7X HC72 GTG sing 148 n n C7X HC73 GTG sing 149 n n C5A C6A GTG sing 150 n n C5A C4A GTG doub 151 n y C6A O6A GTG doub 152 n n C6A N1A GTG sing 153 n n N1A C2A GTG sing 154 n n N1A HN1 GTG sing 155 n n C2A N2A GTG sing 156 n n C2A N3A GTG doub 157 n n N2A HN21 GTG sing 158 n n N2A HN22 GTG sing 159 n n N3A C4A GTG sing 160 n n O5D C5D GTG sing 161 n n C5D C4D GTG sing 162 n n C5D "H5'1" GTG sing 163 n n C5D "H5'2" GTG sing 164 n n C4D O4D GTG sing 165 n n C4D C3D GTG sing 166 n n C4D H4' GTG sing 167 n n O4D C1D GTG sing 168 n n C3D O3D GTG sing 169 n n C3D C2D GTG sing 170 n n C3D H3' GTG sing 171 n n O3D HO3' GTG sing 172 n n C2D O2D GTG sing 173 n n C2D C1D GTG sing 174 n n C2D H2' GTG sing 175 n n O2D HO2' GTG sing 176 n n C1D H1' GTG sing 177 n n PG O1G GTG doub 178 n n PG O2G GTG sing 179 n n PG O5E GTG sing 180 n n O2G HOG2 GTG sing 181 n n O5E C5E GTG sing 182 n n C5E C4E GTG sing 183 n n C5E H5B1 GTG sing 184 n n C5E H5B2 GTG sing 185 n n C4E O4E GTG sing 186 n n C4E C3E GTG sing 187 n n C4E H4B GTG sing 188 n n O4E C1E GTG sing 189 n n C3E O3E GTG sing 190 n n C3E C2E GTG sing 191 n n C3E H3B GTG sing 192 n n O3E H3BO GTG sing 193 n n C2E O2E GTG sing 194 n n C2E C1E GTG sing 195 n n C2E H2B GTG sing 196 n n O2E H2BO GTG sing 197 n n C1E N9B GTG sing 198 n n C1E H1B GTG sing 199 n n N9B C8B GTG sing 200 n y N9B C4B GTG sing 201 n y C8B N7B GTG doub 202 n y C8B H8B GTG sing 203 n n N7B C5B GTG sing 204 n y C5B C6B GTG sing 205 n n C5B C4B GTG doub 206 n y C6B O6B GTG doub 207 n n C6B N1B GTG sing 208 n n N1B C2B GTG sing 209 n n N1B H1BN GTG sing 210 n n C2B N2B GTG sing 211 n n C2B N3B GTG doub 212 n n N2B H2B1 GTG sing 213 n n N2B H2B2 GTG sing 214 n n N3B C4B GTG sing 215 n n # _atom_sites.entry_id 7QIF _atom_sites.fract_transf_matrix[1][1] 0.014851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014856 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GTG D 1 601 601 GTG GTG . C 3 ZN D 1 602 1 ZN ZN . D 3 ZN D 1 603 2 ZN ZN . E 3 ZN D 1 604 3 ZN ZN . F 4 PO4 D 1 605 1 PO4 PO4 . G 4 PO4 D 1 606 2 PO4 PO4 . H 5 HOH D 1 701 3 HOH HOH . H 5 HOH D 2 702 44 HOH HOH . H 5 HOH D 3 703 1 HOH HOH . H 5 HOH D 4 704 6 HOH HOH . H 5 HOH D 5 705 30 HOH HOH . H 5 HOH D 6 706 47 HOH HOH . H 5 HOH D 7 707 48 HOH HOH . H 5 HOH D 8 708 26 HOH HOH . H 5 HOH D 9 709 15 HOH HOH . H 5 HOH D 10 710 13 HOH HOH . H 5 HOH D 11 711 14 HOH HOH . H 5 HOH D 12 712 42 HOH HOH . H 5 HOH D 13 713 19 HOH HOH . H 5 HOH D 14 714 10 HOH HOH . H 5 HOH D 15 715 33 HOH HOH . H 5 HOH D 16 716 34 HOH HOH . H 5 HOH D 17 717 9 HOH HOH . H 5 HOH D 18 718 17 HOH HOH . H 5 HOH D 19 719 23 HOH HOH . H 5 HOH D 20 720 29 HOH HOH . H 5 HOH D 21 721 45 HOH HOH . H 5 HOH D 22 722 5 HOH HOH . H 5 HOH D 23 723 2 HOH HOH . H 5 HOH D 24 724 16 HOH HOH . H 5 HOH D 25 725 32 HOH HOH . H 5 HOH D 26 726 38 HOH HOH . H 5 HOH D 27 727 4 HOH HOH . H 5 HOH D 28 728 7 HOH HOH . H 5 HOH D 29 729 31 HOH HOH . H 5 HOH D 30 730 8 HOH HOH . H 5 HOH D 31 731 39 HOH HOH . H 5 HOH D 32 732 11 HOH HOH . H 5 HOH D 33 733 12 HOH HOH . H 5 HOH D 34 734 18 HOH HOH . H 5 HOH D 35 735 24 HOH HOH . H 5 HOH D 36 736 40 HOH HOH . H 5 HOH D 37 737 43 HOH HOH . H 5 HOH D 38 738 46 HOH HOH . H 5 HOH D 39 739 22 HOH HOH . H 5 HOH D 40 740 35 HOH HOH . H 5 HOH D 41 741 27 HOH HOH . H 5 HOH D 42 742 28 HOH HOH . H 5 HOH D 43 743 37 HOH HOH . H 5 HOH D 44 744 20 HOH HOH . H 5 HOH D 45 745 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA GTG . . . B 2 -18.448 -22.395 21.119 1 79.05 ? PA GTG 601 D 1 HETATM 2 O O1A GTG . . . B 2 -18.497 -20.915 20.924 1 73.68 ? O1A GTG 601 D 1 HETATM 3 O O2A GTG . . . B 2 -18.19 -23.23 19.908 1 64.05 -1 O2A GTG 601 D 1 HETATM 4 O O3A GTG . . . B 2 -19.825 -22.884 21.783 1 77.19 ? O3A GTG 601 D 1 HETATM 5 P PB GTG . . . B 2 -20.645 -22.536 23.114 1 96.01 ? PB GTG 601 D 1 HETATM 6 O O1B GTG . . . B 2 -20.325 -21.136 23.526 1 85.89 ? O1B GTG 601 D 1 HETATM 7 O O2B GTG . . . B 2 -20.497 -23.653 24.094 1 68.94 -1 O2B GTG 601 D 1 HETATM 8 O O3B GTG . . . B 2 -22.135 -22.533 22.523 1 112.89 ? O3B GTG 601 D 1 HETATM 9 N N9A GTG . . . B 2 -14.441 -18.916 22.606 1 34.77 ? N9A GTG 601 D 1 HETATM 10 C C8A GTG . . . B 2 -15.501 -18.357 22.068 1 36.71 ? C8A GTG 601 D 1 HETATM 11 N N7A GTG . . . B 2 -15.145 -17.451 21.159 1 35.34 ? N7A GTG 601 D 1 HETATM 12 C C7X GTG . . . B 2 -16.069 -16.614 20.397 1 21.4 ? C7X GTG 601 D 1 HETATM 13 C C5A GTG . . . B 2 -13.75 -17.456 21.067 1 33.13 ? C5A GTG 601 D 1 HETATM 14 C C6A GTG . . . B 2 -12.859 -16.739 20.275 1 32.01 ? C6A GTG 601 D 1 HETATM 15 O O6A GTG . . . B 2 -13.105 -15.89 19.426 1 28.92 ? O6A GTG 601 D 1 HETATM 16 N N1A GTG . . . B 2 -11.559 -17.103 20.553 1 25.1 ? N1A GTG 601 D 1 HETATM 17 C C2A GTG . . . B 2 -11.169 -18.037 21.476 1 23.09 ? C2A GTG 601 D 1 HETATM 18 N N2A GTG . . . B 2 -9.855 -18.251 21.601 1 21.76 ? N2A GTG 601 D 1 HETATM 19 N N3A GTG . . . B 2 -12.026 -18.711 22.224 1 28.08 ? N3A GTG 601 D 1 HETATM 20 C C4A GTG . . . B 2 -13.307 -18.381 21.978 1 31.3 ? C4A GTG 601 D 1 HETATM 21 O O5D GTG . . . B 2 -17.345 -22.743 22.231 1 65.52 ? O5D GTG 601 D 1 HETATM 22 C C5D GTG . . . B 2 -15.977 -22.707 21.746 1 58.85 ? C5D GTG 601 D 1 HETATM 23 C C4D GTG . . . B 2 -15.011 -22.439 22.874 1 43.8 ? C4D GTG 601 D 1 HETATM 24 O O4D GTG . . . B 2 -14.168 -21.32 22.483 1 35.32 ? O4D GTG 601 D 1 HETATM 25 C C3D GTG . . . B 2 -15.622 -22.01 24.216 1 39.04 ? C3D GTG 601 D 1 HETATM 26 O O3D GTG . . . B 2 -14.707 -22.3 25.263 1 18.75 ? O3D GTG 601 D 1 HETATM 27 C C2D GTG . . . B 2 -15.778 -20.523 23.981 1 50.25 ? C2D GTG 601 D 1 HETATM 28 O O2D GTG . . . B 2 -15.905 -19.753 25.161 1 36.73 ? O2D GTG 601 D 1 HETATM 29 C C1D GTG . . . B 2 -14.451 -20.214 23.311 1 38.85 ? C1D GTG 601 D 1 HETATM 30 P PG GTG . . . B 2 -23.57 -22.245 23.181 1 126.55 ? PG GTG 601 D 1 HETATM 31 O O1G GTG . . . B 2 -23.384 -21.292 24.315 1 97.43 ? O1G GTG 601 D 1 HETATM 32 O O2G GTG . . . B 2 -24.256 -23.544 23.451 1 110.85 -1 O2G GTG 601 D 1 HETATM 33 O O5E GTG . . . B 2 -24.324 -21.479 21.987 1 112.07 ? O5E GTG 601 D 1 HETATM 34 C C5E GTG . . . B 2 -25.106 -22.175 20.978 1 94.64 ? C5E GTG 601 D 1 HETATM 35 C C4E GTG . . . B 2 -24.206 -22.887 19.998 1 94.61 ? C4E GTG 601 D 1 HETATM 36 O O4E GTG . . . B 2 -23.691 -24.087 20.626 1 108.03 ? O4E GTG 601 D 1 HETATM 37 C C3E GTG . . . B 2 -24.913 -23.435 18.755 1 86.24 ? C3E GTG 601 D 1 HETATM 38 O O3E GTG . . . B 2 -23.964 -23.854 17.784 1 72.09 ? O3E GTG 601 D 1 HETATM 39 C C2E GTG . . . B 2 -25.615 -24.642 19.38 1 100.4 ? C2E GTG 601 D 1 HETATM 40 O O2E GTG . . . B 2 -26.108 -25.585 18.452 1 84.84 ? O2E GTG 601 D 1 HETATM 41 C C1E GTG . . . B 2 -24.505 -25.187 20.277 1 108.1 ? C1E GTG 601 D 1 HETATM 42 N N9B GTG . . . B 2 -24.978 -25.806 21.512 1 103.74 ? N9B GTG 601 D 1 HETATM 43 C C8B GTG . . . B 2 -26.058 -25.433 22.271 1 100.67 ? C8B GTG 601 D 1 HETATM 44 N N7B GTG . . . B 2 -26.213 -26.196 23.33 1 98.46 ? N7B GTG 601 D 1 HETATM 45 C C5B GTG . . . B 2 -25.175 -27.119 23.252 1 99.46 ? C5B GTG 601 D 1 HETATM 46 C C6B GTG . . . B 2 -24.834 -28.189 24.116 1 97.22 ? C6B GTG 601 D 1 HETATM 47 O O6B GTG . . . B 2 -25.403 -28.546 25.158 1 78.73 ? O6B GTG 601 D 1 HETATM 48 N N1B GTG . . . B 2 -23.706 -28.872 23.657 1 103.86 ? N1B GTG 601 D 1 HETATM 49 C C2B GTG . . . B 2 -22.998 -28.565 22.519 1 95.3 ? C2B GTG 601 D 1 HETATM 50 N N2B GTG . . . B 2 -21.939 -29.339 22.245 1 72.35 ? N2B GTG 601 D 1 HETATM 51 N N3B GTG . . . B 2 -23.314 -27.559 21.703 1 95.01 ? N3B GTG 601 D 1 HETATM 52 C C4B GTG . . . B 2 -24.408 -26.885 22.134 1 95.15 ? C4B GTG 601 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 52 #