data_7QJK # _model_server_result.job_id 8qEKl684FT3qydS76YkJvg _model_server_result.datetime_utc '2024-11-23 01:35:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 7QJK # _exptl.entry_id 7QJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(phenylmethyl)pyridin-2-amine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QJK _cell.length_a 76.548 _cell.length_b 76.548 _cell.length_c 238.018 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,L 1 1 B,H,I,M 2 1 C,J,N 3 1 D,K,O 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C12 H12 N2' _chem_comp.formula_weight 184.237 _chem_comp.id 9VO _chem_comp.mon_nstd_flag . _chem_comp.name N-(phenylmethyl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 9VO doub 1 n y C12 C13 9VO sing 2 n y C11 C10 9VO sing 3 n y C13 C14 9VO doub 4 n y C10 C9 9VO doub 5 n y C14 C9 9VO sing 6 n y C9 C8 9VO sing 7 n n C4 C3 9VO doub 8 n y C4 C5 9VO sing 9 n y N7 C8 9VO sing 10 n n N7 C5 9VO sing 11 n n C3 C1 9VO sing 12 n y C5 N6 9VO doub 13 n y C1 C2 9VO doub 14 n y N6 C2 9VO sing 15 n y C1 H1 9VO sing 16 n n C2 H2 9VO sing 17 n n C3 H3 9VO sing 18 n n C4 H4 9VO sing 19 n n C8 H5 9VO sing 20 n n C8 H6 9VO sing 21 n n C11 H7 9VO sing 22 n n C12 H8 9VO sing 23 n n C13 H9 9VO sing 24 n n C14 H10 9VO sing 25 n n C10 H11 9VO sing 26 n n N7 H12 9VO sing 27 n n # _atom_sites.entry_id 7QJK _atom_sites.fract_transf_matrix[1][1] 0.013064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO BBB 1 201 201 EDO EDO . F 3 9VO BBB 1 202 301 9VO 579 . G 4 SO4 BBB 1 203 1 SO4 SO4 . H 3 9VO AAA 1 201 201 9VO 579 . I 3 9VO AAA 1 202 301 9VO 579 . J 3 9VO CCC 1 201 201 9VO 579 . K 3 9VO DDD 1 201 201 9VO 579 . L 5 HOH BBB 1 301 3 HOH HOH . L 5 HOH BBB 2 302 28 HOH HOH . L 5 HOH BBB 3 303 17 HOH HOH . L 5 HOH BBB 4 304 1 HOH HOH . L 5 HOH BBB 5 305 25 HOH HOH . L 5 HOH BBB 6 306 15 HOH HOH . L 5 HOH BBB 7 307 4 HOH HOH . M 5 HOH AAA 1 301 9 HOH HOH . M 5 HOH AAA 2 302 8 HOH HOH . M 5 HOH AAA 3 303 16 HOH HOH . M 5 HOH AAA 4 304 2 HOH HOH . M 5 HOH AAA 5 305 26 HOH HOH . N 5 HOH CCC 1 301 19 HOH HOH . N 5 HOH CCC 2 302 10 HOH HOH . N 5 HOH CCC 3 303 21 HOH HOH . N 5 HOH CCC 4 304 5 HOH HOH . N 5 HOH CCC 5 305 27 HOH HOH . N 5 HOH CCC 6 306 18 HOH HOH . N 5 HOH CCC 7 307 14 HOH HOH . N 5 HOH CCC 8 308 22 HOH HOH . N 5 HOH CCC 9 309 23 HOH HOH . N 5 HOH CCC 10 310 6 HOH HOH . O 5 HOH DDD 1 301 24 HOH HOH . O 5 HOH DDD 2 302 13 HOH HOH . O 5 HOH DDD 3 303 11 HOH HOH . O 5 HOH DDD 4 304 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9VO . . . J 3 0.431 -11.054 15.561 1 83.3 ? C1 9VO 201 CCC 1 HETATM 2 C C2 9VO . . . J 3 1.623 -11.716 15.846 1 82.07 ? C2 9VO 201 CCC 1 HETATM 3 C C3 9VO . . . J 3 -0.306 -11.402 14.436 1 77.18 ? C3 9VO 201 CCC 1 HETATM 4 C C4 9VO . . . J 3 0.167 -12.415 13.615 1 78.31 ? C4 9VO 201 CCC 1 HETATM 5 C C5 9VO . . . J 3 1.357 -13.064 13.92 1 78.59 ? C5 9VO 201 CCC 1 HETATM 6 C C8 9VO . . . J 3 1.801 -13.887 11.661 1 72.11 ? C8 9VO 201 CCC 1 HETATM 7 C C11 9VO . . . J 3 -0.679 -15.46 9.478 1 69.85 ? C11 9VO 201 CCC 1 HETATM 8 C C12 9VO . . . J 3 -0.71 -16.745 10.006 1 69.79 ? C12 9VO 201 CCC 1 HETATM 9 C C13 9VO . . . J 3 0.096 -17.076 11.09 1 65 ? C13 9VO 201 CCC 1 HETATM 10 C C14 9VO . . . J 3 0.932 -16.12 11.644 1 60.82 ? C14 9VO 201 CCC 1 HETATM 11 N N6 9VO . . . J 3 2.074 -12.732 15.003 1 76.06 ? N6 9VO 201 CCC 1 HETATM 12 C C10 9VO . . . J 3 0.16 -14.504 10.032 1 66.44 ? C10 9VO 201 CCC 1 HETATM 13 C C9 9VO . . . J 3 0.963 -14.837 11.114 1 64.32 ? C9 9VO 201 CCC 1 HETATM 14 N N7 9VO . . . J 3 1.792 -14.029 13.125 1 75.05 ? N7 9VO 201 CCC 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #