data_7QJK # _model_server_result.job_id AJLDwKj2RgkWWjPPoSlhiQ _model_server_result.datetime_utc '2024-11-12 21:01:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qjk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":201}' # _entry.id 7QJK # _exptl.entry_id 7QJK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 184.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(phenylmethyl)pyridin-2-amine _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QJK _cell.length_a 76.548 _cell.length_b 76.548 _cell.length_c 238.018 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,L 1 1 B,H,I,M 2 1 C,J,N 3 1 D,K,O 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # _chem_comp.formula 'C12 H12 N2' _chem_comp.formula_weight 184.237 _chem_comp.id 9VO _chem_comp.mon_nstd_flag . _chem_comp.name N-(phenylmethyl)pyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C11 9VO doub 1 n y C12 C13 9VO sing 2 n y C11 C10 9VO sing 3 n y C13 C14 9VO doub 4 n y C10 C9 9VO doub 5 n y C14 C9 9VO sing 6 n y C9 C8 9VO sing 7 n n C4 C3 9VO doub 8 n y C4 C5 9VO sing 9 n y N7 C8 9VO sing 10 n n N7 C5 9VO sing 11 n n C3 C1 9VO sing 12 n y C5 N6 9VO doub 13 n y C1 C2 9VO doub 14 n y N6 C2 9VO sing 15 n y C1 H1 9VO sing 16 n n C2 H2 9VO sing 17 n n C3 H3 9VO sing 18 n n C4 H4 9VO sing 19 n n C8 H5 9VO sing 20 n n C8 H6 9VO sing 21 n n C11 H7 9VO sing 22 n n C12 H8 9VO sing 23 n n C13 H9 9VO sing 24 n n C14 H10 9VO sing 25 n n C10 H11 9VO sing 26 n n N7 H12 9VO sing 27 n n # _atom_sites.entry_id 7QJK _atom_sites.fract_transf_matrix[1][1] 0.013064 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013064 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO BBB 1 201 201 EDO EDO . F 3 9VO BBB 1 202 301 9VO 579 . G 4 SO4 BBB 1 203 1 SO4 SO4 . H 3 9VO AAA 1 201 201 9VO 579 . I 3 9VO AAA 1 202 301 9VO 579 . J 3 9VO CCC 1 201 201 9VO 579 . K 3 9VO DDD 1 201 201 9VO 579 . L 5 HOH BBB 1 301 3 HOH HOH . L 5 HOH BBB 2 302 28 HOH HOH . L 5 HOH BBB 3 303 17 HOH HOH . L 5 HOH BBB 4 304 1 HOH HOH . L 5 HOH BBB 5 305 25 HOH HOH . L 5 HOH BBB 6 306 15 HOH HOH . L 5 HOH BBB 7 307 4 HOH HOH . M 5 HOH AAA 1 301 9 HOH HOH . M 5 HOH AAA 2 302 8 HOH HOH . M 5 HOH AAA 3 303 16 HOH HOH . M 5 HOH AAA 4 304 2 HOH HOH . M 5 HOH AAA 5 305 26 HOH HOH . N 5 HOH CCC 1 301 19 HOH HOH . N 5 HOH CCC 2 302 10 HOH HOH . N 5 HOH CCC 3 303 21 HOH HOH . N 5 HOH CCC 4 304 5 HOH HOH . N 5 HOH CCC 5 305 27 HOH HOH . N 5 HOH CCC 6 306 18 HOH HOH . N 5 HOH CCC 7 307 14 HOH HOH . N 5 HOH CCC 8 308 22 HOH HOH . N 5 HOH CCC 9 309 23 HOH HOH . N 5 HOH CCC 10 310 6 HOH HOH . O 5 HOH DDD 1 301 24 HOH HOH . O 5 HOH DDD 2 302 13 HOH HOH . O 5 HOH DDD 3 303 11 HOH HOH . O 5 HOH DDD 4 304 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9VO . . . K 3 -16.137 -34.531 24.209 1 81.64 ? C1 9VO 201 DDD 1 HETATM 2 C C2 9VO . . . K 3 -15.546 -33.893 23.125 1 80.53 ? C2 9VO 201 DDD 1 HETATM 3 C C3 9VO . . . K 3 -15.534 -35.66 24.752 1 78.58 ? C3 9VO 201 DDD 1 HETATM 4 C C4 9VO . . . K 3 -14.348 -36.132 24.2 1 76.78 ? C4 9VO 201 DDD 1 HETATM 5 C C5 9VO . . . K 3 -13.77 -35.479 23.115 1 78.27 ? C5 9VO 201 DDD 1 HETATM 6 C C8 9VO . . . K 3 -11.778 -36.963 23.142 1 79.74 ? C8 9VO 201 DDD 1 HETATM 7 C C11 9VO . . . K 3 -10.322 -34.966 25.859 1 77.26 ? C11 9VO 201 DDD 1 HETATM 8 C C12 9VO . . . K 3 -8.973 -35.256 25.707 1 75.17 ? C12 9VO 201 DDD 1 HETATM 9 C C13 9VO . . . K 3 -8.559 -36.115 24.7 1 74.12 ? C13 9VO 201 DDD 1 HETATM 10 C C14 9VO . . . K 3 -9.495 -36.683 23.845 1 78.36 ? C14 9VO 201 DDD 1 HETATM 11 N N6 9VO . . . K 3 -14.355 -34.391 22.593 1 80.48 ? N6 9VO 201 DDD 1 HETATM 12 C C10 9VO . . . K 3 -11.258 -35.534 25.006 1 75.99 ? C10 9VO 201 DDD 1 HETATM 13 C C9 9VO . . . K 3 -10.845 -36.392 23.996 1 75.78 ? C9 9VO 201 DDD 1 HETATM 14 N N7 9VO . . . K 3 -12.632 -35.909 22.564 1 79.21 ? N7 9VO 201 DDD 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 14 #