data_7QJK
#
_model_server_result.job_id            8wE74WRdONMLOc5Zh2Gikg 
_model_server_result.datetime_utc      '2024-11-26 16:05:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qjk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":202}' 
#
_entry.id    7QJK 
#
_exptl.entry_id    7QJK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              184.237 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(phenylmethyl)pyridin-2-amine 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QJK 
_cell.length_a            76.548 
_cell.length_b            76.548 
_cell.length_c            238.018 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QJK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,L 1 1 
B,H,I,M 2 1 
C,J,N 3 1 
D,K,O 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C12 H12 N2' 
_chem_comp.formula_weight    184.237 
_chem_comp.id                9VO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(phenylmethyl)pyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C12 C11 9VO doub 1 n y 
C12 C13 9VO sing 2 n y 
C11 C10 9VO sing 3 n y 
C13 C14 9VO doub 4 n y 
C10 C9 9VO doub 5 n y 
C14 C9 9VO sing 6 n y 
C9 C8 9VO sing 7 n n 
C4 C3 9VO doub 8 n y 
C4 C5 9VO sing 9 n y 
N7 C8 9VO sing 10 n n 
N7 C5 9VO sing 11 n n 
C3 C1 9VO sing 12 n y 
C5 N6 9VO doub 13 n y 
C1 C2 9VO doub 14 n y 
N6 C2 9VO sing 15 n y 
C1 H1 9VO sing 16 n n 
C2 H2 9VO sing 17 n n 
C3 H3 9VO sing 18 n n 
C4 H4 9VO sing 19 n n 
C8 H5 9VO sing 20 n n 
C8 H6 9VO sing 21 n n 
C11 H7 9VO sing 22 n n 
C12 H8 9VO sing 23 n n 
C13 H9 9VO sing 24 n n 
C14 H10 9VO sing 25 n n 
C10 H11 9VO sing 26 n n 
N7 H12 9VO sing 27 n n 
#
_atom_sites.entry_id                     7QJK 
_atom_sites.fract_transf_matrix[1][1]    0.013064 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013064 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004201 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EDO BBB 1 201 201 EDO EDO . 
F 3 9VO BBB 1 202 301 9VO 579 . 
G 4 SO4 BBB 1 203 1 SO4 SO4 . 
H 3 9VO AAA 1 201 201 9VO 579 . 
I 3 9VO AAA 1 202 301 9VO 579 . 
J 3 9VO CCC 1 201 201 9VO 579 . 
K 3 9VO DDD 1 201 201 9VO 579 . 
L 5 HOH BBB 1 301 3 HOH HOH . 
L 5 HOH BBB 2 302 28 HOH HOH . 
L 5 HOH BBB 3 303 17 HOH HOH . 
L 5 HOH BBB 4 304 1 HOH HOH . 
L 5 HOH BBB 5 305 25 HOH HOH . 
L 5 HOH BBB 6 306 15 HOH HOH . 
L 5 HOH BBB 7 307 4 HOH HOH . 
M 5 HOH AAA 1 301 9 HOH HOH . 
M 5 HOH AAA 2 302 8 HOH HOH . 
M 5 HOH AAA 3 303 16 HOH HOH . 
M 5 HOH AAA 4 304 2 HOH HOH . 
M 5 HOH AAA 5 305 26 HOH HOH . 
N 5 HOH CCC 1 301 19 HOH HOH . 
N 5 HOH CCC 2 302 10 HOH HOH . 
N 5 HOH CCC 3 303 21 HOH HOH . 
N 5 HOH CCC 4 304 5 HOH HOH . 
N 5 HOH CCC 5 305 27 HOH HOH . 
N 5 HOH CCC 6 306 18 HOH HOH . 
N 5 HOH CCC 7 307 14 HOH HOH . 
N 5 HOH CCC 8 308 22 HOH HOH . 
N 5 HOH CCC 9 309 23 HOH HOH . 
N 5 HOH CCC 10 310 6 HOH HOH . 
O 5 HOH DDD 1 301 24 HOH HOH . 
O 5 HOH DDD 2 302 13 HOH HOH . 
O 5 HOH DDD 3 303 11 HOH HOH . 
O 5 HOH DDD 4 304 20 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 9VO . . . I 3 22.905 -3.185 4.024 1 81.61 ? C1 9VO 202 AAA 1 
HETATM 2 C C2 9VO . . . I 3 22.573 -3.147 5.371 1 82.47 ? C2 9VO 202 AAA 1 
HETATM 3 C C3 9VO . . . I 3 24.24 -3.25 3.655 1 85.44 ? C3 9VO 202 AAA 1 
HETATM 4 C C4 9VO . . . I 3 25.221 -3.274 4.635 1 86.43 ? C4 9VO 202 AAA 1 
HETATM 5 C C5 9VO . . . I 3 24.869 -3.236 5.974 1 90.16 ? C5 9VO 202 AAA 1 
HETATM 6 C C8 9VO . . . I 3 27.239 -3.416 6.514 1 105.72 ? C8 9VO 202 AAA 1 
HETATM 7 C C11 9VO . . . I 3 29.74 -5.713 7.909 1 87.73 ? C11 9VO 202 AAA 1 
HETATM 8 C C12 9VO . . . I 3 29.189 -5.994 9.153 1 87.73 ? C12 9VO 202 AAA 1 
HETATM 9 C C13 9VO . . . I 3 27.982 -5.41 9.517 1 95.86 ? C13 9VO 202 AAA 1 
HETATM 10 C C14 9VO . . . I 3 27.326 -4.551 8.643 1 102.55 ? C14 9VO 202 AAA 1 
HETATM 11 N N6 9VO . . . I 3 23.583 -3.175 6.34 1 88.62 ? N6 9VO 202 AAA 1 
HETATM 12 C C10 9VO . . . I 3 29.085 -4.853 7.034 1 92.46 ? C10 9VO 202 AAA 1 
HETATM 13 C C9 9VO . . . I 3 27.877 -4.271 7.398 1 103.49 ? C9 9VO 202 AAA 1 
HETATM 14 N N7 9VO . . . I 3 25.825 -3.259 6.889 1 98.26 ? N7 9VO 202 AAA 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           14 
#