data_7QKR # _model_server_result.job_id 4lB0k9eg18vYJao-Q1EgaQ _model_server_result.datetime_utc '2024-11-14 18:46:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 7QKR # _exptl.entry_id 7QKR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 454.602 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Dexverapamil _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QKR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 447 A SER 435 1_555 D MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 C O3G ANP . A ANP 1302 1_555 D MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C27 H38 N2 O4' _chem_comp.formula_weight 454.602 _chem_comp.id I6H _chem_comp.mon_nstd_flag . _chem_comp.name Dexverapamil _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 O19 I6H sing 300 n n N4 C3 I6H trip 301 n n O19 C6 I6H sing 302 n n C3 C1 I6H sing 303 n n C6 C5 I6H doub 304 n y C6 C9 I6H sing 305 n y C5 C2 I6H sing 306 n y C1 C2 I6H sing 307 n n C1 C22 I6H sing 308 n n C1 C15 I6H sing 309 n n C9 O23 I6H sing 310 n n C9 C13 I6H doub 311 n y O23 C32 I6H sing 312 n n C2 C11 I6H doub 313 n y C28 C15 I6H sing 314 n n C22 C26 I6H sing 315 n n C15 C29 I6H sing 316 n n C13 C11 I6H sing 317 n y C26 C25 I6H sing 318 n n C25 N8 I6H sing 319 n n C33 O24 I6H sing 320 n n N8 C16 I6H sing 321 n n N8 C27 I6H sing 322 n n C16 C21 I6H sing 323 n n C14 C18 I6H doub 324 n y C14 C10 I6H sing 325 n y O24 C10 I6H sing 326 n n C18 C17 I6H sing 327 n y C10 C7 I6H doub 328 n y C17 C21 I6H sing 329 n n C17 C12 I6H doub 330 n y C7 C12 I6H sing 331 n y C7 O20 I6H sing 332 n n O20 C31 I6H sing 333 n n C30 H1 I6H sing 334 n n C30 H2 I6H sing 335 n n C30 H3 I6H sing 336 n n C5 H4 I6H sing 337 n n C32 H5 I6H sing 338 n n C32 H6 I6H sing 339 n n C32 H7 I6H sing 340 n n C13 H8 I6H sing 341 n n C11 H9 I6H sing 342 n n C15 H10 I6H sing 343 n n C29 H11 I6H sing 344 n n C29 H12 I6H sing 345 n n C29 H13 I6H sing 346 n n C28 H14 I6H sing 347 n n C28 H15 I6H sing 348 n n C28 H16 I6H sing 349 n n C22 H17 I6H sing 350 n n C22 H18 I6H sing 351 n n C26 H19 I6H sing 352 n n C26 H20 I6H sing 353 n n C25 H21 I6H sing 354 n n C25 H22 I6H sing 355 n n C27 H24 I6H sing 356 n n C27 H25 I6H sing 357 n n C27 H26 I6H sing 358 n n C16 H27 I6H sing 359 n n C16 H28 I6H sing 360 n n C21 H29 I6H sing 361 n n C21 H30 I6H sing 362 n n C12 H31 I6H sing 363 n n C18 H32 I6H sing 364 n n C14 H33 I6H sing 365 n n C33 H34 I6H sing 366 n n C33 H35 I6H sing 367 n n C33 H36 I6H sing 368 n n C31 H37 I6H sing 369 n n C31 H38 I6H sing 370 n n C31 H39 I6H sing 371 n n # _atom_sites.entry_id 7QKR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I6H A 1 1301 1301 I6H LIG . C 3 ANP A 1 1302 1301 ANP ANP . D 4 MG A 1 1303 1305 MG MG . E 5 9Z9 A 1 1304 1306 9Z9 9Z9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C30 I6H . . . B 2 92.07 105.291 105.82 1 37.81 ? C30 I6H 1301 A 1 HETATM 2 O O19 I6H . . . B 2 91.216 104.797 106.809 1 37.81 ? O19 I6H 1301 A 1 HETATM 3 C C6 I6H . . . B 2 91.904 104.243 107.886 1 37.81 ? C6 I6H 1301 A 1 HETATM 4 C C5 I6H . . . B 2 93.28 104.306 107.893 1 37.81 ? C5 I6H 1301 A 1 HETATM 5 C C9 I6H . . . B 2 91.236 103.637 108.932 1 37.81 ? C9 I6H 1301 A 1 HETATM 6 O O23 I6H . . . B 2 89.843 103.562 108.942 1 37.81 ? O23 I6H 1301 A 1 HETATM 7 C C32 I6H . . . B 2 89.344 102.951 110.094 1 37.81 ? C32 I6H 1301 A 1 HETATM 8 C C13 I6H . . . B 2 91.95 103.098 109.986 1 37.81 ? C13 I6H 1301 A 1 HETATM 9 C C11 I6H . . . B 2 93.333 103.16 109.997 1 37.81 ? C11 I6H 1301 A 1 HETATM 10 C C2 I6H . . . B 2 93.992 103.771 108.948 1 37.81 ? C2 I6H 1301 A 1 HETATM 11 C C1 I6H . . . B 2 95.51 103.859 108.906 1 37.81 ? C1 I6H 1301 A 1 HETATM 12 C C15 I6H . . . B 2 96.144 102.745 109.708 1 37.81 ? C15 I6H 1301 A 1 HETATM 13 C C29 I6H . . . B 2 96.311 103.158 111.164 1 37.81 ? C29 I6H 1301 A 1 HETATM 14 C C28 I6H . . . B 2 97.498 102.433 109.078 1 37.81 ? C28 I6H 1301 A 1 HETATM 15 C C3 I6H . . . B 2 95.945 103.655 107.461 1 37.81 ? C3 I6H 1301 A 1 HETATM 16 N N4 I6H . . . B 2 96.255 103.481 106.387 1 37.81 ? N4 I6H 1301 A 1 HETATM 17 C C22 I6H . . . B 2 95.978 105.211 109.446 1 37.81 ? C22 I6H 1301 A 1 HETATM 18 C C26 I6H . . . B 2 95.008 105.785 110.481 1 37.81 ? C26 I6H 1301 A 1 HETATM 19 C C25 I6H . . . B 2 95.217 107.271 110.77 1 37.81 ? C25 I6H 1301 A 1 HETATM 20 N N8 I6H . . . B 2 94.482 107.58 111.979 1 37.81 ? N8 I6H 1301 A 1 HETATM 21 C C27 I6H . . . B 2 94.993 106.755 113.056 1 37.81 ? C27 I6H 1301 A 1 HETATM 22 C C16 I6H . . . B 2 94.619 108.983 112.317 1 37.81 ? C16 I6H 1301 A 1 HETATM 23 C C21 I6H . . . B 2 93.561 109.357 113.355 1 37.81 ? C21 I6H 1301 A 1 HETATM 24 C C17 I6H . . . B 2 92.98 110.751 113.139 1 37.81 ? C17 I6H 1301 A 1 HETATM 25 C C12 I6H . . . B 2 93.686 111.877 113.514 1 37.81 ? C12 I6H 1301 A 1 HETATM 26 C C18 I6H . . . B 2 91.738 110.88 112.565 1 37.81 ? C18 I6H 1301 A 1 HETATM 27 C C14 I6H . . . B 2 91.197 112.132 112.357 1 37.81 ? C14 I6H 1301 A 1 HETATM 28 C C10 I6H . . . B 2 91.896 113.259 112.73 1 37.81 ? C10 I6H 1301 A 1 HETATM 29 O O24 I6H . . . B 2 91.324 114.516 112.509 1 37.81 ? O24 I6H 1301 A 1 HETATM 30 C C33 I6H . . . B 2 90.354 114.516 111.504 1 37.81 ? C33 I6H 1301 A 1 HETATM 31 C C7 I6H . . . B 2 93.147 113.136 113.311 1 37.81 ? C7 I6H 1301 A 1 HETATM 32 O O20 I6H . . . B 2 93.864 114.276 113.693 1 37.81 ? O20 I6H 1301 A 1 HETATM 33 C C31 I6H . . . B 2 95.237 114.058 113.833 1 37.81 ? C31 I6H 1301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #