data_7QKR # _model_server_result.job_id PNXNyzh-ZH0Md-uLP72fcQ _model_server_result.datetime_utc '2024-11-14 19:08:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qkr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1302}' # _entry.id 7QKR # _exptl.entry_id 7QKR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QKR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QKR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 447 A SER 435 1_555 D MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc2 C O3G ANP . A ANP 1302 1_555 D MG MG . A MG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 113 n n PG O2G ANP sing 114 n n PG O3G ANP sing 115 n n PG N3B ANP sing 116 n n O2G HOG2 ANP sing 117 n n O3G HOG3 ANP sing 118 n n PB O1B ANP doub 119 n n PB O2B ANP sing 120 n n PB N3B ANP sing 121 n n PB O3A ANP sing 122 n n O2B HOB2 ANP sing 123 n n N3B HNB1 ANP sing 124 n n PA O1A ANP doub 125 n n PA O2A ANP sing 126 n n PA O3A ANP sing 127 n n PA O5' ANP sing 128 n n O2A HOA2 ANP sing 129 n n O5' C5' ANP sing 130 n n C5' C4' ANP sing 131 n n C5' "H5'1" ANP sing 132 n n C5' "H5'2" ANP sing 133 n n C4' O4' ANP sing 134 n n C4' C3' ANP sing 135 n n C4' H4' ANP sing 136 n n O4' C1' ANP sing 137 n n C3' O3' ANP sing 138 n n C3' C2' ANP sing 139 n n C3' H3' ANP sing 140 n n O3' HO3' ANP sing 141 n n C2' O2' ANP sing 142 n n C2' C1' ANP sing 143 n n C2' H2' ANP sing 144 n n O2' HO2' ANP sing 145 n n C1' N9 ANP sing 146 n n C1' H1' ANP sing 147 n n N9 C8 ANP sing 148 n y N9 C4 ANP sing 149 n y C8 N7 ANP doub 150 n y C8 H8 ANP sing 151 n n N7 C5 ANP sing 152 n y C5 C6 ANP sing 153 n y C5 C4 ANP doub 154 n y C6 N6 ANP sing 155 n n C6 N1 ANP doub 156 n y N6 HN61 ANP sing 157 n n N6 HN62 ANP sing 158 n n N1 C2 ANP sing 159 n y C2 N3 ANP doub 160 n y C2 H2 ANP sing 161 n n N3 C4 ANP sing 162 n y # _atom_sites.entry_id 7QKR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I6H A 1 1301 1301 I6H LIG . C 3 ANP A 1 1302 1301 ANP ANP . D 4 MG A 1 1303 1305 MG MG . E 5 9Z9 A 1 1304 1306 9Z9 9Z9 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 150.377 132.169 133.477 1 57.7 ? PG ANP 1302 A 1 HETATM 2 O O1G ANP . . . C 3 149.955 132.04 132.041 1 57.7 ? O1G ANP 1302 A 1 HETATM 3 O O2G ANP . . . C 3 151.735 132.803 133.522 1 57.7 ? O2G ANP 1302 A 1 HETATM 4 O O3G ANP . . . C 3 149.418 133.085 134.191 1 57.7 ? O3G ANP 1302 A 1 HETATM 5 P PB ANP . . . C 3 150.824 130.485 135.751 1 57.7 ? PB ANP 1302 A 1 HETATM 6 O O1B ANP . . . C 3 152.305 130.642 135.937 1 57.7 ? O1B ANP 1302 A 1 HETATM 7 O O2B ANP . . . C 3 149.905 131.235 136.666 1 57.7 ? O2B ANP 1302 A 1 HETATM 8 N N3B ANP . . . C 3 150.392 130.713 134.202 1 57.7 ? N3B ANP 1302 A 1 HETATM 9 P PA ANP . . . C 3 149.153 128.202 136.443 1 57.7 ? PA ANP 1302 A 1 HETATM 10 O O1A ANP . . . C 3 149.051 128.194 137.927 1 57.7 ? O1A ANP 1302 A 1 HETATM 11 O O2A ANP . . . C 3 148.038 128.804 135.659 1 57.7 ? O2A ANP 1302 A 1 HETATM 12 O O3A ANP . . . C 3 150.508 128.942 136.023 1 57.7 ? O3A ANP 1302 A 1 HETATM 13 O O5' ANP . . . C 3 149.414 126.715 135.927 1 57.7 ? O5' ANP 1302 A 1 HETATM 14 C C5' ANP . . . C 3 150.593 125.984 136.335 1 57.7 ? C5' ANP 1302 A 1 HETATM 15 C C4' ANP . . . C 3 150.643 124.662 135.607 1 57.7 ? C4' ANP 1302 A 1 HETATM 16 O O4' ANP . . . C 3 149.432 123.917 135.89 1 57.7 ? O4' ANP 1302 A 1 HETATM 17 C C3' ANP . . . C 3 150.719 124.701 134.074 1 57.7 ? C3' ANP 1302 A 1 HETATM 18 O O3' ANP . . . C 3 151.312 123.504 133.593 1 57.7 ? O3' ANP 1302 A 1 HETATM 19 C C2' ANP . . . C 3 149.238 124.712 133.696 1 57.7 ? C2' ANP 1302 A 1 HETATM 20 O O2' ANP . . . C 3 148.996 124.337 132.357 1 57.7 ? O2' ANP 1302 A 1 HETATM 21 C C1' ANP . . . C 3 148.696 123.708 134.706 1 57.7 ? C1' ANP 1302 A 1 HETATM 22 N N9 ANP . . . C 3 147.296 123.886 135.044 1 57.7 ? N9 ANP 1302 A 1 HETATM 23 C C8 ANP . . . C 3 146.638 125.062 135.281 1 57.7 ? C8 ANP 1302 A 1 HETATM 24 N N7 ANP . . . C 3 145.372 124.881 135.575 1 57.7 ? N7 ANP 1302 A 1 HETATM 25 C C5 ANP . . . C 3 145.191 123.506 135.512 1 57.7 ? C5 ANP 1302 A 1 HETATM 26 C C6 ANP . . . C 3 144.068 122.683 135.715 1 57.7 ? C6 ANP 1302 A 1 HETATM 27 N N6 ANP . . . C 3 142.865 123.142 136.041 1 57.7 ? N6 ANP 1302 A 1 HETATM 28 N N1 ANP . . . C 3 144.243 121.349 135.569 1 57.7 ? N1 ANP 1302 A 1 HETATM 29 C C2 ANP . . . C 3 145.458 120.893 135.239 1 57.7 ? C2 ANP 1302 A 1 HETATM 30 N N3 ANP . . . C 3 146.582 121.569 135.031 1 57.7 ? N3 ANP 1302 A 1 HETATM 31 C C4 ANP . . . C 3 146.375 122.886 135.183 1 57.7 ? C4 ANP 1302 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #