data_7QL5 # _model_server_result.job_id riYHlL8y-ZlVvrn32diN3g _model_server_result.datetime_utc '2024-11-27 20:09:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ql5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":601}' # _entry.id 7QL5 # _exptl.entry_id 7QL5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 162.232 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QL5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 M N N ? 9 T N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide 8 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 5 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 5 6 4 MAN MAN C1 O1 . O6 HO6 . sing 6 ? 5 7 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 8 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 9 ? 6 4 3 MAN BMA C1 O1 . O3 HO3 . sing 10 ? 6 5 3 MAN BMA C1 O1 . O6 HO6 . sing 11 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 8 2 1 NAG NAG C1 O1 . O4 HO4 . sing 13 ? 8 3 2 BMA NAG C1 O1 . O4 HO4 . sing 14 ? 8 4 3 MAN BMA C1 O1 . O6 HO6 . sing 15 ? 8 5 4 MAN MAN C1 O1 . O6 HO6 . sing 16 ? 8 6 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n F NAG 1 F 1 NAG A 701 NAG 5 n F NAG 2 F 2 NAG A 702 NAG 5 n F BMA 3 F 3 BMA A 703 BMA 5 n F MAN 4 F 4 MAN A 704 MAN 5 n F MAN 5 F 5 MAN A 707 MAN 5 n F MAN 6 F 6 MAN A 706 MAN 5 n F MAN 7 F 7 MAN A 705 MAN 6 n G NAG 1 G 1 NAG B 701 NAG 6 n G NAG 2 G 2 NAG B 702 NAG 6 n G BMA 3 G 3 BMA B 703 BMA 6 n G MAN 4 G 4 MAN B 705 MAN 6 n G MAN 5 G 5 MAN B 704 MAN 6 n H NAG 1 H 1 NAG C 701 NAG 6 n H NAG 2 H 2 NAG C 702 NAG 6 n H BMA 3 H 3 BMA C 703 BMA 6 n H MAN 4 H 4 MAN C 704 MAN 6 n H MAN 5 H 5 MAN C 705 MAN 6 n I NAG 1 I 1 NAG C 751 NAG 6 n I NAG 2 I 2 NAG C 752 NAG 6 n I BMA 3 I 3 BMA C 753 BMA 6 n I MAN 4 I 4 MAN C 754 MAN 6 n I MAN 5 I 5 MAN C 755 MAN 7 n J NAG 1 J 1 NAG C 801 NAG 7 n J NAG 2 J 2 NAG C 802 NAG 8 n K NAG 1 K 1 NAG D 701 NAG 8 n K NAG 2 K 2 NAG D 702 NAG 8 n K BMA 3 K 3 BMA D 703 BMA 8 n K MAN 4 K 4 MAN D 704 MAN 8 n K MAN 5 K 5 MAN D 706 MAN 8 n K MAN 6 K 6 MAN D 705 MAN 8 n L NAG 1 L 1 NAG E 701 NAG 8 n L NAG 2 L 2 NAG E 702 NAG 8 n L BMA 3 L 3 BMA E 703 BMA 8 n L MAN 4 L 4 MAN E 704 MAN 8 n L MAN 5 L 5 MAN E 706 MAN 8 n L MAN 6 L 6 MAN E 705 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 128 A CYS 128 1_555 A SG CYS 142 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? disulf ? disulf2 A SG CYS 192 A CYS 192 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf3 B SG CYS 128 B CYS 128 1_555 B SG CYS 142 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 130 C CYS 130 1_555 C SG CYS 144 C CYS 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 128 D CYS 128 1_555 D SG CYS 142 D CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf6 D SG CYS 192 D CYS 192 1_555 D SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf7 E SG CYS 128 E CYS 128 1_555 E SG CYS 142 E CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 141 A ASN 141 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale2 B ND2 ASN 141 B ASN 141 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 C ND2 ASN 70 C ASN 70 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 C ND2 ASN 143 C ASN 143 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 C ND2 ASN 208 C ASN 208 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 D ND2 ASN 141 D ASN 141 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 E ND2 ASN 68 E ASN 68 1_555 W C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 E ND2 ASN 141 E ASN 141 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale9 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale10 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale11 F O6 BMA . F BMA 3 1_555 F C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 F O3 BMA . F BMA 3 1_555 F C1 MAN . F MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 F O3 MAN . F MAN 4 1_555 F C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 F O6 MAN . F MAN 4 1_555 F C1 MAN . F MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale16 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale17 G O3 BMA . G BMA 3 1_555 G C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale18 G O6 BMA . G BMA 3 1_555 G C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale19 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale20 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale21 H O3 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale22 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale23 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale24 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale25 I O3 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale26 I O6 BMA . I BMA 3 1_555 I C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale27 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale28 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale29 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale30 K O6 BMA . K BMA 3 1_555 K C1 MAN . K MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale31 K O3 BMA . K BMA 3 1_555 K C1 MAN . K MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale32 K O6 MAN . K MAN 4 1_555 K C1 MAN . K MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale33 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale34 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale35 L O6 BMA . L BMA 3 1_555 L C1 MAN . L MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale36 L O3 BMA . L BMA 3 1_555 L C1 MAN . L MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale37 L O6 MAN . L MAN 4 1_555 L C1 MAN . L MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? # _chem_comp.formula 'C10 H14 N2' _chem_comp.formula_weight 162.232 _chem_comp.id NCT _chem_comp.mon_nstd_flag . _chem_comp.name (S)-3-(1-METHYLPYRROLIDIN-2-YL)PYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S)-(-)-NICOTINE;3-[(2S)-1-METHYL-2-PYRROLIDINYL] PYRIDINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 NCT doub 315 n y N1 C5 NCT sing 316 n y C1 C2 NCT sing 317 n y C1 HC1 NCT sing 318 n n C2 C3 NCT doub 319 n y C2 C6 NCT sing 320 n n C3 C4 NCT sing 321 n y C3 HC3 NCT sing 322 n n C4 C5 NCT doub 323 n y C4 HC4 NCT sing 324 n n C5 HC5 NCT sing 325 n n N2 C6 NCT sing 326 n n N2 C9 NCT sing 327 n n N2 C10 NCT sing 328 n n C6 C7 NCT sing 329 n n C6 HC6 NCT sing 330 n n C7 C8 NCT sing 331 n n C7 HC71 NCT sing 332 n n C7 HC72 NCT sing 333 n n C8 C9 NCT sing 334 n n C8 HC81 NCT sing 335 n n C8 HC82 NCT sing 336 n n C9 HC91 NCT sing 337 n n C9 HC92 NCT sing 338 n n C10 H101 NCT sing 339 n n C10 H102 NCT sing 340 n n C10 H103 NCT sing 341 n n # _atom_sites.entry_id 7QL5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 9 NCT A 1 601 601 NCT NCT . N 10 POV A 1 602 1 POV POV . O 10 POV A 1 603 2 POV POV . P 10 POV A 1 604 11 POV POV . Q 10 POV B 1 501 12 POV POV . R 10 POV C 1 601 3 POV POV . S 10 POV C 1 602 13 POV POV . T 9 NCT D 1 601 601 NCT NCT . U 10 POV D 1 602 4 POV POV . V 10 POV D 1 603 15 POV POV . W 11 NAG E 1 501 751 NAG NAG . X 10 POV E 1 502 5 POV POV . Y 10 POV E 1 503 21 POV POV . Z 10 POV E 1 504 25 POV POV . AA 12 HOH C 1 701 2 HOH HOH . BA 12 HOH E 1 601 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NCT . . . M 9 148.629 121.593 118.535 1 53.25 ? N1 NCT 601 A 1 HETATM 2 C C1 NCT . . . M 9 149.168 121.291 119.753 1 53.25 ? C1 NCT 601 A 1 HETATM 3 C C2 NCT . . . M 9 149.786 120.069 119.954 1 53.25 ? C2 NCT 601 A 1 HETATM 4 C C3 NCT . . . M 9 149.849 119.172 118.943 1 53.25 ? C3 NCT 601 A 1 HETATM 5 C C4 NCT . . . M 9 149.31 119.474 117.732 1 53.25 ? C4 NCT 601 A 1 HETATM 6 C C5 NCT . . . M 9 148.692 120.703 117.533 1 53.25 ? C5 NCT 601 A 1 HETATM 7 N N2 NCT . . . M 9 151.399 120.559 121.644 1 53.25 ? N2 NCT 601 A 1 HETATM 8 C C6 NCT . . . M 9 150.405 119.722 121.349 1 53.25 ? C6 NCT 601 A 1 HETATM 9 C C7 NCT . . . M 9 149.303 119.9 122.493 1 53.25 ? C7 NCT 601 A 1 HETATM 10 C C8 NCT . . . M 9 149.77 121.138 123.315 1 53.25 ? C8 NCT 601 A 1 HETATM 11 C C9 NCT . . . M 9 151.113 121.151 123.158 1 53.25 ? C9 NCT 601 A 1 HETATM 12 C C10 NCT . . . M 9 152.689 119.783 121.691 1 53.25 ? C10 NCT 601 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #