data_7QL8 # _model_server_result.job_id xLmw097bNY9YQQCukHwvVQ _model_server_result.datetime_utc '2024-11-20 00:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ql8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 7QL8 # _exptl.entry_id 7QL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QL8 _cell.length_a 45.52 _cell.length_b 64.04 _cell.length_c 105.38 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 AAA CYS 145 1_555 B C8 I70 . AAA I70 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.849 ? metalc ? metalc1 A O LEU 58 AAA LEU 58 1_555 D NA NA . AAA NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc2 A O LYS 61 AAA LYS 61 1_555 D NA NA . AAA NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7QL8 _atom_sites.fract_transf_matrix[1][1] 0.021968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I70 AAA 1 401 401 I70 LIG . C 3 CL AAA 1 402 1 CL CL . D 4 NA AAA 1 403 1 NA NA . E 4 NA AAA 1 404 2 NA NA . F 5 HOH AAA 1 501 204 HOH HOH . F 5 HOH AAA 2 502 219 HOH HOH . F 5 HOH AAA 3 503 153 HOH HOH . F 5 HOH AAA 4 504 123 HOH HOH . F 5 HOH AAA 5 505 55 HOH HOH . F 5 HOH AAA 6 506 189 HOH HOH . F 5 HOH AAA 7 507 188 HOH HOH . F 5 HOH AAA 8 508 64 HOH HOH . F 5 HOH AAA 9 509 183 HOH HOH . F 5 HOH AAA 10 510 200 HOH HOH . F 5 HOH AAA 11 511 50 HOH HOH . F 5 HOH AAA 12 512 196 HOH HOH . F 5 HOH AAA 13 513 116 HOH HOH . F 5 HOH AAA 14 514 194 HOH HOH . F 5 HOH AAA 15 515 122 HOH HOH . F 5 HOH AAA 16 516 40 HOH HOH . F 5 HOH AAA 17 517 73 HOH HOH . F 5 HOH AAA 18 518 78 HOH HOH . F 5 HOH AAA 19 519 95 HOH HOH . F 5 HOH AAA 20 520 125 HOH HOH . F 5 HOH AAA 21 521 137 HOH HOH . F 5 HOH AAA 22 522 129 HOH HOH . F 5 HOH AAA 23 523 53 HOH HOH . F 5 HOH AAA 24 524 9 HOH HOH . F 5 HOH AAA 25 525 56 HOH HOH . F 5 HOH AAA 26 526 46 HOH HOH . F 5 HOH AAA 27 527 41 HOH HOH . F 5 HOH AAA 28 528 35 HOH HOH . F 5 HOH AAA 29 529 140 HOH HOH . F 5 HOH AAA 30 530 76 HOH HOH . F 5 HOH AAA 31 531 161 HOH HOH . F 5 HOH AAA 32 532 210 HOH HOH . F 5 HOH AAA 33 533 209 HOH HOH . F 5 HOH AAA 34 534 67 HOH HOH . F 5 HOH AAA 35 535 143 HOH HOH . F 5 HOH AAA 36 536 213 HOH HOH . F 5 HOH AAA 37 537 91 HOH HOH . F 5 HOH AAA 38 538 191 HOH HOH . F 5 HOH AAA 39 539 22 HOH HOH . F 5 HOH AAA 40 540 127 HOH HOH . F 5 HOH AAA 41 541 81 HOH HOH . F 5 HOH AAA 42 542 94 HOH HOH . F 5 HOH AAA 43 543 206 HOH HOH . F 5 HOH AAA 44 544 115 HOH HOH . F 5 HOH AAA 45 545 21 HOH HOH . F 5 HOH AAA 46 546 211 HOH HOH . F 5 HOH AAA 47 547 208 HOH HOH . F 5 HOH AAA 48 548 218 HOH HOH . F 5 HOH AAA 49 549 199 HOH HOH . F 5 HOH AAA 50 550 128 HOH HOH . F 5 HOH AAA 51 551 71 HOH HOH . F 5 HOH AAA 52 552 47 HOH HOH . F 5 HOH AAA 53 553 134 HOH HOH . F 5 HOH AAA 54 554 14 HOH HOH . F 5 HOH AAA 55 555 214 HOH HOH . F 5 HOH AAA 56 556 207 HOH HOH . F 5 HOH AAA 57 557 205 HOH HOH . F 5 HOH AAA 58 558 182 HOH HOH . F 5 HOH AAA 59 559 104 HOH HOH . F 5 HOH AAA 60 560 212 HOH HOH . F 5 HOH AAA 61 561 111 HOH HOH . F 5 HOH AAA 62 562 110 HOH HOH . F 5 HOH AAA 63 563 193 HOH HOH . F 5 HOH AAA 64 564 28 HOH HOH . F 5 HOH AAA 65 565 61 HOH HOH . F 5 HOH AAA 66 566 174 HOH HOH . F 5 HOH AAA 67 567 86 HOH HOH . F 5 HOH AAA 68 568 5 HOH HOH . F 5 HOH AAA 69 569 101 HOH HOH . F 5 HOH AAA 70 570 216 HOH HOH . F 5 HOH AAA 71 571 215 HOH HOH . F 5 HOH AAA 72 572 217 HOH HOH . F 5 HOH AAA 73 573 203 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 21.67 _atom_site.Cartn_y -26.099 _atom_site.Cartn_z -7.269 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 59.05 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #