data_7QLQ # _model_server_result.job_id RM76qi4C4_BY5wgcDc14Fg _model_server_result.datetime_utc '2024-11-17 05:40:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qlq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 7QLQ # _exptl.entry_id 7QLQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QLQ _cell.length_a 61.291 _cell.length_b 85.455 _cell.length_c 137.226 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QLQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 196 AAA ASP 196 1_555 F FE FE . AAA FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc2 A NE2 HIS 200 AAA HIS 200 1_555 F FE FE . AAA FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc3 A NE2 HIS 263 AAA HIS 263 1_555 F FE FE . AAA FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc4 A NE2 HIS 277 AAA HIS 277 1_555 F FE FE . AAA FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc5 C O3 E9I . AAA E9I 401 1_555 F FE FE . AAA FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc6 F FE FE . AAA FE 404 1_555 L O HOH . AAA HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc7 B OD1 ASP 196 BBB ASP 196 1_555 K FE FE . BBB FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 B NE2 HIS 200 BBB HIS 200 1_555 K FE FE . BBB FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc9 B NE2 HIS 263 BBB HIS 263 1_555 K FE FE . BBB FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc10 B NE2 HIS 277 BBB HIS 277 1_555 K FE FE . BBB FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc11 H O3 E9I . BBB E9I 401 1_555 K FE FE . BBB FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? metalc ? metalc12 K FE FE . BBB FE 404 1_555 M O HOH . BBB HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 19 n y N1 C6 APR doub 20 n y C2 N3 APR doub 21 n y C2 H2 APR sing 22 n n N3 C4 APR sing 23 n y C4 C5 APR doub 24 n y C4 N9 APR sing 25 n y C5 C6 APR sing 26 n y C5 N7 APR sing 27 n y C6 N6 APR sing 28 n n N6 H61 APR sing 29 n n N6 H62 APR sing 30 n n N7 C8 APR doub 31 n y C8 N9 APR sing 32 n y C8 H8 APR sing 33 n n N9 C1' APR sing 34 n n C1' C2' APR sing 35 n n C1' O4' APR sing 36 n n C1' "H'1" APR sing 37 n n C2' O2' APR sing 38 n n C2' C3' APR sing 39 n n C2' "H'2" APR sing 40 n n O2' "HO'2" APR sing 41 n n C3' O3' APR sing 42 n n C3' C4' APR sing 43 n n C3' "H'3" APR sing 44 n n O3' "HO'3" APR sing 45 n n O4' C4' APR sing 46 n n C4' C5' APR sing 47 n n C4' "H'4" APR sing 48 n n C5' O5' APR sing 49 n n C5' "H5'1" APR sing 50 n n C5' "H5'2" APR sing 51 n n O5' PA APR sing 52 n n PA O1A APR doub 53 n n PA O2A APR sing 54 n n PA O3A APR sing 55 n n O2A HOA2 APR sing 56 n n O3A PB APR sing 57 n n PB O1B APR doub 58 n n PB O2B APR sing 59 n n PB O5D APR sing 60 n n O2B HOB2 APR sing 61 n n O5D C5D APR sing 62 n n C5D C4D APR sing 63 n n C5D H5R1 APR sing 64 n n C5D H5R2 APR sing 65 n n O4D C1D APR sing 66 n n O4D C4D APR sing 67 n n O1D C1D APR sing 68 n n O1D HOR1 APR sing 69 n n C1D C2D APR sing 70 n n C1D "HR'1" APR sing 71 n n O2D C2D APR sing 72 n n O2D HOR2 APR sing 73 n n C2D C3D APR sing 74 n n C2D "HR'2" APR sing 75 n n O3D C3D APR sing 76 n n O3D HOR3 APR sing 77 n n C3D C4D APR sing 78 n n C3D "HR'3" APR sing 79 n n C4D "HR'4" APR sing 80 n n # _atom_sites.entry_id 7QLQ _atom_sites.fract_transf_matrix[1][1] 0.016316 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E9I AAA 1 401 402 E9I XXX . D 3 APR AAA 1 402 403 APR APR . E 4 ACT AAA 1 403 403 ACT ACT . F 5 FE AAA 1 404 1 FE FE . G 4 ACT AAA 1 405 1 ACT ACT . H 2 E9I BBB 1 401 402 E9I XXX . I 6 GOL BBB 1 402 404 GOL GOL . J 3 APR BBB 1 403 405 APR APR . K 5 FE BBB 1 404 2 FE FE . L 7 HOH AAA 1 501 4 HOH HOH . L 7 HOH AAA 2 502 26 HOH HOH . L 7 HOH AAA 3 503 23 HOH HOH . L 7 HOH AAA 4 504 21 HOH HOH . L 7 HOH AAA 5 505 15 HOH HOH . L 7 HOH AAA 6 506 31 HOH HOH . L 7 HOH AAA 7 507 53 HOH HOH . L 7 HOH AAA 8 508 6 HOH HOH . L 7 HOH AAA 9 509 36 HOH HOH . L 7 HOH AAA 10 510 32 HOH HOH . L 7 HOH AAA 11 511 7 HOH HOH . L 7 HOH AAA 12 512 13 HOH HOH . L 7 HOH AAA 13 513 1 HOH HOH . L 7 HOH AAA 14 514 3 HOH HOH . L 7 HOH AAA 15 515 48 HOH HOH . L 7 HOH AAA 16 516 35 HOH HOH . L 7 HOH AAA 17 517 47 HOH HOH . L 7 HOH AAA 18 518 29 HOH HOH . L 7 HOH AAA 19 519 39 HOH HOH . L 7 HOH AAA 20 520 43 HOH HOH . L 7 HOH AAA 21 521 38 HOH HOH . L 7 HOH AAA 22 522 49 HOH HOH . L 7 HOH AAA 23 523 45 HOH HOH . L 7 HOH AAA 24 524 34 HOH HOH . L 7 HOH AAA 25 525 50 HOH HOH . L 7 HOH AAA 26 526 37 HOH HOH . L 7 HOH AAA 27 527 44 HOH HOH . L 7 HOH AAA 28 528 40 HOH HOH . L 7 HOH AAA 29 529 17 HOH HOH . L 7 HOH AAA 30 530 22 HOH HOH . L 7 HOH AAA 31 531 46 HOH HOH . L 7 HOH AAA 32 532 20 HOH HOH . L 7 HOH AAA 33 533 12 HOH HOH . L 7 HOH AAA 34 534 52 HOH HOH . L 7 HOH AAA 35 535 19 HOH HOH . L 7 HOH AAA 36 536 33 HOH HOH . M 7 HOH BBB 1 501 8 HOH HOH . M 7 HOH BBB 2 502 30 HOH HOH . M 7 HOH BBB 3 503 54 HOH HOH . M 7 HOH BBB 4 504 2 HOH HOH . M 7 HOH BBB 5 505 51 HOH HOH . M 7 HOH BBB 6 506 24 HOH HOH . M 7 HOH BBB 7 507 27 HOH HOH . M 7 HOH BBB 8 508 14 HOH HOH . M 7 HOH BBB 9 509 41 HOH HOH . M 7 HOH BBB 10 510 5 HOH HOH . M 7 HOH BBB 11 511 25 HOH HOH . M 7 HOH BBB 12 512 11 HOH HOH . M 7 HOH BBB 13 513 28 HOH HOH . M 7 HOH BBB 14 514 42 HOH HOH . M 7 HOH BBB 15 515 16 HOH HOH . M 7 HOH BBB 16 516 10 HOH HOH . M 7 HOH BBB 17 517 9 HOH HOH . M 7 HOH BBB 18 518 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . D 3 6.294 -10.813 12.29 1 43.63 0 N1 APR 402 AAA 1 HETATM 2 C C2 APR . . . D 3 6.582 -12.122 12.264 1 45.19 0 C2 APR 402 AAA 1 HETATM 3 N N3 APR . . . D 3 5.925 -13.141 12.814 1 45.95 0 N3 APR 402 AAA 1 HETATM 4 C C4 APR . . . D 3 4.832 -12.703 13.465 1 45.83 0 C4 APR 402 AAA 1 HETATM 5 C C5 APR . . . D 3 4.408 -11.397 13.583 1 44.45 0 C5 APR 402 AAA 1 HETATM 6 C C6 APR . . . D 3 5.19 -10.405 12.96 1 44.55 0 C6 APR 402 AAA 1 HETATM 7 N N6 APR . . . D 3 4.893 -9.109 12.986 1 45.39 0 N6 APR 402 AAA 1 HETATM 8 N N7 APR . . . D 3 3.24 -11.341 14.329 1 44 0 N7 APR 402 AAA 1 HETATM 9 C C8 APR . . . D 3 2.981 -12.592 14.635 1 44.89 0 C8 APR 402 AAA 1 HETATM 10 N N9 APR . . . D 3 3.915 -13.46 14.143 1 43.95 0 N9 APR 402 AAA 1 HETATM 11 C C1' APR . . . D 3 3.954 -14.911 14.276 1 45.43 0 C1' APR 402 AAA 1 HETATM 12 C C2' APR . . . D 3 3.751 -15.457 15.683 1 46.11 0 C2' APR 402 AAA 1 HETATM 13 O O2' APR . . . D 3 4.934 -15.383 16.446 1 46.39 0 O2' APR 402 AAA 1 HETATM 14 C C3' APR . . . D 3 3.365 -16.901 15.356 1 47.48 0 C3' APR 402 AAA 1 HETATM 15 O O3' APR . . . D 3 4.519 -17.706 15.143 1 48.21 0 O3' APR 402 AAA 1 HETATM 16 O O4' APR . . . D 3 2.906 -15.461 13.514 1 44.91 0 O4' APR 402 AAA 1 HETATM 17 C C4' APR . . . D 3 2.525 -16.745 14.076 1 47.15 0 C4' APR 402 AAA 1 HETATM 18 C C5' APR . . . D 3 1.028 -16.763 14.275 1 46.75 0 C5' APR 402 AAA 1 HETATM 19 O O5' APR . . . D 3 0.696 -15.807 15.316 1 46.65 0 O5' APR 402 AAA 1 HETATM 20 P PA APR . . . D 3 -0.777 -15.763 15.929 1 44.5 0 PA APR 402 AAA 1 HETATM 21 O O1A APR . . . D 3 -0.784 -14.827 17.092 1 41.09 0 O1A APR 402 AAA 1 HETATM 22 O O2A APR . . . D 3 -1.281 -17.159 16.086 1 44.77 0 O2A APR 402 AAA 1 HETATM 23 O O3A APR . . . D 3 -1.553 -15.084 14.698 1 47.26 0 O3A APR 402 AAA 1 HETATM 24 P PB APR . . . D 3 -3.029 -14.508 14.461 1 45.54 0 PB APR 402 AAA 1 HETATM 25 O O1B APR . . . D 3 -2.999 -13.026 14.645 1 42.03 0 O1B APR 402 AAA 1 HETATM 26 O O2B APR . . . D 3 -3.535 -15.067 13.173 1 44.44 0 O2B APR 402 AAA 1 HETATM 27 O O5D APR . . . D 3 -3.809 -15.175 15.695 1 45.78 0 O5D APR 402 AAA 1 HETATM 28 C C5D APR . . . D 3 -4.557 -16.405 15.515 1 47.43 0 C5D APR 402 AAA 1 HETATM 29 O O4D APR . . . D 3 -6.165 -15.671 17.154 1 47.7 0 O4D APR 402 AAA 1 HETATM 30 O O1D APR . . . D 3 -8.364 -15.215 16.611 1 46.46 0 O1D APR 402 AAA 1 HETATM 31 C C1D APR . . . D 3 -7.515 -16.137 17.202 1 49.01 0 C1D APR 402 AAA 1 HETATM 32 O O2D APR . . . D 3 -8.514 -18.386 16.822 1 49.27 0 O2D APR 402 AAA 1 HETATM 33 C C2D APR . . . D 3 -7.499 -17.474 16.453 1 48.73 0 C2D APR 402 AAA 1 HETATM 34 O O3D APR . . . D 3 -6.07 -18.66 18.056 1 48.38 0 O3D APR 402 AAA 1 HETATM 35 C C3D APR . . . D 3 -6.118 -18.023 16.788 1 48.57 0 C3D APR 402 AAA 1 HETATM 36 C C4D APR . . . D 3 -5.265 -16.748 16.805 1 48.53 0 C4D APR 402 AAA 1 HETATM 37 H H2 APR . . . D 3 7.364 -12.355 11.787 1 45.19 0 H2 APR 402 AAA 1 HETATM 38 H H61 APR . . . D 3 4.175 -8.836 13.409 1 45.39 0 H61 APR 402 AAA 1 HETATM 39 H H62 APR . . . D 3 5.417 -8.535 12.58 1 45.39 0 H62 APR 402 AAA 1 HETATM 40 H H8 APR . . . D 3 2.225 -12.845 15.137 1 44.89 0 H8 APR 402 AAA 1 HETATM 41 H "H'1" APR . . . D 3 4.819 -15.222 13.926 1 45.43 0 "H'1" APR 402 AAA 1 HETATM 42 H "H'2" APR . . . D 3 3.004 -14.991 16.145 1 46.11 0 "H'2" APR 402 AAA 1 HETATM 43 H "HO'2" APR . . . D 3 5.223 -16.169 16.588 0 46.39 0 "HO'2" APR 402 AAA 1 HETATM 44 H "H'3" APR . . . D 3 2.816 -17.287 16.086 1 47.48 0 "H'3" APR 402 AAA 1 HETATM 45 H "HO'3" APR . . . D 3 4.531 -17.957 14.332 0 48.21 0 "HO'3" APR 402 AAA 1 HETATM 46 H "H'4" APR . . . D 3 2.759 -17.456 13.442 1 47.15 0 "H'4" APR 402 AAA 1 HETATM 47 H "H5'1" APR . . . D 3 0.736 -17.67 14.545 1 46.75 0 "H5'1" APR 402 AAA 1 HETATM 48 H "H5'2" APR . . . D 3 0.574 -16.514 13.431 1 46.75 0 "H5'2" APR 402 AAA 1 HETATM 49 H H5R1 APR . . . D 3 -3.942 -17.139 15.267 1 47.43 0 H5R1 APR 402 AAA 1 HETATM 50 H H5R2 APR . . . D 3 -5.22 -16.292 14.79 1 47.43 0 H5R2 APR 402 AAA 1 HETATM 51 H HOR1 APR . . . D 3 -8.732 -15.558 15.927 0 46.46 0 HOR1 APR 402 AAA 1 HETATM 52 H "HR'1" APR . . . D 3 -7.799 -16.231 18.146 1 49.01 0 "HR'1" APR 402 AAA 1 HETATM 53 H HOR2 APR . . . D 3 -8.169 -19.081 17.167 0 49.27 0 HOR2 APR 402 AAA 1 HETATM 54 H "HR'2" APR . . . D 3 -7.593 -17.346 15.445 1 48.73 0 "HR'2" APR 402 AAA 1 HETATM 55 H HOR3 APR . . . D 3 -5.575 -18.203 18.572 0 48.38 0 HOR3 APR 402 AAA 1 HETATM 56 H "HR'3" APR . . . D 3 -5.79 -18.673 16.034 1 48.57 0 "HR'3" APR 402 AAA 1 HETATM 57 H "HR'4" APR . . . D 3 -4.56 -16.849 17.541 1 48.53 0 "HR'4" APR 402 AAA 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 57 #