data_7QLS # _model_server_result.job_id 4iW0zGvYqFosWQH4t4jujg _model_server_result.datetime_utc '2024-11-14 16:02:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qls # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 7QLS # _exptl.entry_id 7QLS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QLS _cell.length_a 61.262 _cell.length_b 86.432 _cell.length_c 137.833 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 196 AAA ASP 196 1_555 E FE FE . AAA FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc2 A NE2 HIS 200 AAA HIS 200 1_555 E FE FE . AAA FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc3 A NE2 HIS 263 AAA HIS 263 1_555 E FE FE . AAA FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 A NE2 HIS 277 AAA HIS 277 1_555 E FE FE . AAA FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 C O3 E9I . AAA E9I 401 1_555 E FE FE . AAA FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc6 E FE FE . AAA FE 403 1_555 I O HOH . AAA HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc7 B OD1 ASP 196 BBB ASP 196 1_555 H FE FE . BBB FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc8 B NE2 HIS 200 BBB HIS 200 1_555 H FE FE . BBB FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc9 B NE2 HIS 263 BBB HIS 263 1_555 H FE FE . BBB FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc10 B NE2 HIS 277 BBB HIS 277 1_555 H FE FE . BBB FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc11 F O3 E9I . BBB E9I 401 1_555 H FE FE . BBB FE 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc12 H FE FE . BBB FE 403 1_555 J O HOH . BBB HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 7QLS _atom_sites.fract_transf_matrix[1][1] 0.016323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01157 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007255 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 E9I AAA 1 401 402 E9I XXX . D 3 APR AAA 1 402 403 APR APR . E 4 FE AAA 1 403 1 FE FE . F 2 E9I BBB 1 401 402 E9I XXX . G 3 APR BBB 1 402 403 APR APR . H 4 FE BBB 1 403 2 FE FE . I 5 HOH AAA 1 501 10 HOH HOH . I 5 HOH AAA 2 502 56 HOH HOH . I 5 HOH AAA 3 503 40 HOH HOH . I 5 HOH AAA 4 504 3 HOH HOH . I 5 HOH AAA 5 505 8 HOH HOH . I 5 HOH AAA 6 506 64 HOH HOH . I 5 HOH AAA 7 507 42 HOH HOH . I 5 HOH AAA 8 508 17 HOH HOH . I 5 HOH AAA 9 509 72 HOH HOH . I 5 HOH AAA 10 510 53 HOH HOH . I 5 HOH AAA 11 511 22 HOH HOH . I 5 HOH AAA 12 512 54 HOH HOH . I 5 HOH AAA 13 513 62 HOH HOH . I 5 HOH AAA 14 514 33 HOH HOH . I 5 HOH AAA 15 515 6 HOH HOH . I 5 HOH AAA 16 516 29 HOH HOH . I 5 HOH AAA 17 517 52 HOH HOH . I 5 HOH AAA 18 518 67 HOH HOH . I 5 HOH AAA 19 519 77 HOH HOH . I 5 HOH AAA 20 520 21 HOH HOH . I 5 HOH AAA 21 521 38 HOH HOH . I 5 HOH AAA 22 522 39 HOH HOH . I 5 HOH AAA 23 523 32 HOH HOH . I 5 HOH AAA 24 524 63 HOH HOH . I 5 HOH AAA 25 525 69 HOH HOH . I 5 HOH AAA 26 526 5 HOH HOH . I 5 HOH AAA 27 527 26 HOH HOH . I 5 HOH AAA 28 528 46 HOH HOH . I 5 HOH AAA 29 529 1 HOH HOH . I 5 HOH AAA 30 530 23 HOH HOH . I 5 HOH AAA 31 531 34 HOH HOH . I 5 HOH AAA 32 532 47 HOH HOH . I 5 HOH AAA 33 533 7 HOH HOH . I 5 HOH AAA 34 534 50 HOH HOH . I 5 HOH AAA 35 535 15 HOH HOH . I 5 HOH AAA 36 536 75 HOH HOH . I 5 HOH AAA 37 537 41 HOH HOH . I 5 HOH AAA 38 538 66 HOH HOH . I 5 HOH AAA 39 539 37 HOH HOH . I 5 HOH AAA 40 540 49 HOH HOH . J 5 HOH BBB 1 501 27 HOH HOH . J 5 HOH BBB 2 502 44 HOH HOH . J 5 HOH BBB 3 503 14 HOH HOH . J 5 HOH BBB 4 504 35 HOH HOH . J 5 HOH BBB 5 505 59 HOH HOH . J 5 HOH BBB 6 506 55 HOH HOH . J 5 HOH BBB 7 507 24 HOH HOH . J 5 HOH BBB 8 508 25 HOH HOH . J 5 HOH BBB 9 509 76 HOH HOH . J 5 HOH BBB 10 510 2 HOH HOH . J 5 HOH BBB 11 511 57 HOH HOH . J 5 HOH BBB 12 512 13 HOH HOH . J 5 HOH BBB 13 513 19 HOH HOH . J 5 HOH BBB 14 514 61 HOH HOH . J 5 HOH BBB 15 515 18 HOH HOH . J 5 HOH BBB 16 516 68 HOH HOH . J 5 HOH BBB 17 517 73 HOH HOH . J 5 HOH BBB 18 518 4 HOH HOH . J 5 HOH BBB 19 519 28 HOH HOH . J 5 HOH BBB 20 520 60 HOH HOH . J 5 HOH BBB 21 521 65 HOH HOH . J 5 HOH BBB 22 522 20 HOH HOH . J 5 HOH BBB 23 523 74 HOH HOH . J 5 HOH BBB 24 524 9 HOH HOH . J 5 HOH BBB 25 525 30 HOH HOH . J 5 HOH BBB 26 526 31 HOH HOH . J 5 HOH BBB 27 527 58 HOH HOH . J 5 HOH BBB 28 528 36 HOH HOH . J 5 HOH BBB 29 529 12 HOH HOH . J 5 HOH BBB 30 530 51 HOH HOH . J 5 HOH BBB 31 531 48 HOH HOH . J 5 HOH BBB 32 532 43 HOH HOH . J 5 HOH BBB 33 533 16 HOH HOH . J 5 HOH BBB 34 534 70 HOH HOH . J 5 HOH BBB 35 535 45 HOH HOH . J 5 HOH BBB 36 536 11 HOH HOH . J 5 HOH BBB 37 537 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . G 3 -36.776 10.962 12.402 1 53.93 0 N1 APR 402 BBB 1 HETATM 2 C C2 APR . . . G 3 -37.044 12.274 12.328 1 55.84 0 C2 APR 402 BBB 1 HETATM 3 N N3 APR . . . G 3 -36.415 13.298 12.902 1 55.41 0 N3 APR 402 BBB 1 HETATM 4 C C4 APR . . . G 3 -35.374 12.863 13.635 1 58.06 0 C4 APR 402 BBB 1 HETATM 5 C C5 APR . . . G 3 -34.973 11.553 13.806 1 57.66 0 C5 APR 402 BBB 1 HETATM 6 C C6 APR . . . G 3 -35.724 10.555 13.152 1 56.49 0 C6 APR 402 BBB 1 HETATM 7 N N6 APR . . . G 3 -35.447 9.255 13.222 1 55.38 0 N6 APR 402 BBB 1 HETATM 8 N N7 APR . . . G 3 -33.855 11.498 14.63 1 55.11 0 N7 APR 402 BBB 1 HETATM 9 C C8 APR . . . G 3 -33.601 12.752 14.93 1 57.09 0 C8 APR 402 BBB 1 HETATM 10 N N9 APR . . . G 3 -34.495 13.626 14.359 1 56.51 0 N9 APR 402 BBB 1 HETATM 11 C C1' APR . . . G 3 -34.515 15.084 14.47 1 59.52 0 C1' APR 402 BBB 1 HETATM 12 C C2' APR . . . G 3 -34.331 15.649 15.873 1 58.87 0 C2' APR 402 BBB 1 HETATM 13 O O2' APR . . . G 3 -35.51 15.606 16.642 1 62.31 0 O2' APR 402 BBB 1 HETATM 14 C C3' APR . . . G 3 -33.926 17.084 15.529 1 61.05 0 C3' APR 402 BBB 1 HETATM 15 O O3' APR . . . G 3 -35.068 17.886 15.255 1 65.39 0 O3' APR 402 BBB 1 HETATM 16 O O4' APR . . . G 3 -33.431 15.602 13.733 1 60.15 0 O4' APR 402 BBB 1 HETATM 17 C C4' APR . . . G 3 -33.049 16.894 14.279 1 60.7 0 C4' APR 402 BBB 1 HETATM 18 C C5' APR . . . G 3 -31.557 16.91 14.515 1 56.59 0 C5' APR 402 BBB 1 HETATM 19 O O5' APR . . . G 3 -31.25 16.005 15.604 1 52.64 0 O5' APR 402 BBB 1 HETATM 20 P PA APR . . . G 3 -29.76 15.936 16.18 1 53.15 0 PA APR 402 BBB 1 HETATM 21 O O1A APR . . . G 3 -29.704 14.896 17.249 1 50.43 0 O1A APR 402 BBB 1 HETATM 22 O O2A APR . . . G 3 -29.288 17.319 16.473 1 55.5 0 O2A APR 402 BBB 1 HETATM 23 O O3A APR . . . G 3 -28.948 15.411 14.892 1 55.86 0 O3A APR 402 BBB 1 HETATM 24 P PB APR . . . G 3 -27.504 14.734 14.692 1 52.92 0 PB APR 402 BBB 1 HETATM 25 O O1B APR . . . G 3 -27.638 13.266 14.891 1 50.53 0 O1B APR 402 BBB 1 HETATM 26 O O2B APR . . . G 3 -26.912 15.227 13.416 1 52.64 0 O2B APR 402 BBB 1 HETATM 27 O O5D APR . . . G 3 -26.7 15.353 15.942 1 58.76 0 O5D APR 402 BBB 1 HETATM 28 C C5D APR . . . G 3 -25.977 16.608 15.817 1 56.39 0 C5D APR 402 BBB 1 HETATM 29 O O4D APR . . . G 3 -24.333 15.813 17.403 1 58.43 0 O4D APR 402 BBB 1 HETATM 30 O O1D APR . . . G 3 -22.077 15.41 17.021 1 58.9 0 O1D APR 402 BBB 1 HETATM 31 C C1D APR . . . G 3 -23 16.321 17.512 1 60.53 0 C1D APR 402 BBB 1 HETATM 32 O O2D APR . . . G 3 -21.972 18.51 16.909 1 59.62 0 O2D APR 402 BBB 1 HETATM 33 C C2D APR . . . G 3 -23.032 17.607 16.682 1 60.61 0 C2D APR 402 BBB 1 HETATM 34 O O3D APR . . . G 3 -24.319 18.737 18.413 1 62.1 0 O3D APR 402 BBB 1 HETATM 35 C C3D APR . . . G 3 -24.379 18.167 17.114 1 59.6 0 C3D APR 402 BBB 1 HETATM 36 C C4D APR . . . G 3 -25.244 16.899 17.106 1 59.03 0 C4D APR 402 BBB 1 HETATM 37 H H2 APR . . . G 3 -37.786 12.505 11.791 1 55.84 0 H2 APR 402 BBB 1 HETATM 38 H H61 APR . . . G 3 -34.762 8.981 13.697 1 55.38 0 H61 APR 402 BBB 1 HETATM 39 H H62 APR . . . G 3 -35.951 8.679 12.793 1 55.38 0 H62 APR 402 BBB 1 HETATM 40 H H8 APR . . . G 3 -32.876 13.006 15.476 1 57.09 0 H8 APR 402 BBB 1 HETATM 41 H "H'1" APR . . . G 3 -35.362 15.409 14.09 1 59.52 0 "H'1" APR 402 BBB 1 HETATM 42 H "H'2" APR . . . G 3 -33.596 15.184 16.355 1 58.87 0 "H'2" APR 402 BBB 1 HETATM 43 H "HO'2" APR . . . G 3 -35.784 16.399 16.775 0 62.31 0 "HO'2" APR 402 BBB 1 HETATM 44 H "H'3" APR . . . G 3 -33.396 17.482 16.267 1 61.05 0 "H'3" APR 402 BBB 1 HETATM 45 H "HO'3" APR . . . G 3 -35.051 18.114 14.437 0 65.39 0 "HO'3" APR 402 BBB 1 HETATM 46 H "H'4" APR . . . G 3 -33.264 17.593 13.625 1 60.7 0 "H'4" APR 402 BBB 1 HETATM 47 H "H5'1" APR . . . G 3 -31.264 17.826 14.75 1 56.59 0 "H5'1" APR 402 BBB 1 HETATM 48 H "H5'2" APR . . . G 3 -31.084 16.618 13.696 1 56.59 0 "H5'2" APR 402 BBB 1 HETATM 49 H H5R1 APR . . . G 3 -26.61 17.343 15.624 1 56.39 0 H5R1 APR 402 BBB 1 HETATM 50 H H5R2 APR . . . G 3 -25.328 16.549 15.073 1 56.39 0 H5R2 APR 402 BBB 1 HETATM 51 H HOR1 APR . . . G 3 -21.689 15.732 16.338 0 58.9 0 HOR1 APR 402 BBB 1 HETATM 52 H "HR'1" APR . . . G 3 -22.774 16.485 18.462 1 60.53 0 "HR'1" APR 402 BBB 1 HETATM 53 H HOR2 APR . . . G 3 -22.269 19.226 17.254 0 59.62 0 HOR2 APR 402 BBB 1 HETATM 54 H "HR'2" APR . . . G 3 -23.028 17.433 15.677 1 60.61 0 "HR'2" APR 402 BBB 1 HETATM 55 H HOR3 APR . . . G 3 -24.78 18.259 18.942 0 62.1 0 HOR3 APR 402 BBB 1 HETATM 56 H "HR'3" APR . . . G 3 -24.737 18.859 16.413 1 59.6 0 "HR'3" APR 402 BBB 1 HETATM 57 H "HR'4" APR . . . G 3 -25.934 16.97 17.859 1 59.03 0 "HR'4" APR 402 BBB 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 57 #