data_7QM4
#
_model_server_result.job_id            vfdcSR3GgWY8BlrZix1yMQ 
_model_server_result.datetime_utc      '2024-11-07 15:56:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qm4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2602}' 
#
_entry.id    7QM4 
#
_exptl.entry_id    7QM4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              178.226 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.491 
_cell.angle_gamma         90 
_cell.entry_id            7QM4 
_cell.length_a            45.954 
_cell.length_b            74.071 
_cell.length_c            53.319 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QM4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             344 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              255 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             379 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              290 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.031 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C8 H18 O4' 
_chem_comp.formula_weight    178.226 
_chem_comp.id                PG5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PG5 sing 246 n n 
C1 H11 PG5 sing 247 n n 
C1 H12 PG5 sing 248 n n 
C1 H13 PG5 sing 249 n n 
O1 C2 PG5 sing 250 n n 
C2 C3 PG5 sing 251 n n 
C2 H21 PG5 sing 252 n n 
C2 H22 PG5 sing 253 n n 
C3 O2 PG5 sing 254 n n 
C3 H31 PG5 sing 255 n n 
C3 H32 PG5 sing 256 n n 
O2 C4 PG5 sing 257 n n 
C4 C5 PG5 sing 258 n n 
C4 H41 PG5 sing 259 n n 
C4 H42 PG5 sing 260 n n 
C5 O3 PG5 sing 261 n n 
C5 H51 PG5 sing 262 n n 
C5 H52 PG5 sing 263 n n 
O3 C6 PG5 sing 264 n n 
C6 C7 PG5 sing 265 n n 
C6 H61 PG5 sing 266 n n 
C6 H62 PG5 sing 267 n n 
C7 O4 PG5 sing 268 n n 
C7 H71 PG5 sing 269 n n 
C7 H72 PG5 sing 270 n n 
O4 C8 PG5 sing 271 n n 
C8 H81 PG5 sing 272 n n 
C8 H82 PG5 sing 273 n n 
C8 H83 PG5 sing 274 n n 
#
_atom_sites.entry_id                     7QM4 
_atom_sites.fract_transf_matrix[1][1]    0.021761 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007702 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013501 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019895 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 U1H A 1 2601 2601 U1H LIG . 
C 3 PG5 A 1 2602 2801 PG5 PG5 . 
D 4 DMS A 1 2603 3001 DMS DMS . 
E 4 DMS A 1 2604 3101 DMS DMS . 
F 5 HOH A 1 2701 119 HOH HOH . 
F 5 HOH A 2 2702 90 HOH HOH . 
F 5 HOH A 3 2703 49 HOH HOH . 
F 5 HOH A 4 2704 110 HOH HOH . 
F 5 HOH A 5 2705 76 HOH HOH . 
F 5 HOH A 6 2706 47 HOH HOH . 
F 5 HOH A 7 2707 22 HOH HOH . 
F 5 HOH A 8 2708 87 HOH HOH . 
F 5 HOH A 9 2709 27 HOH HOH . 
F 5 HOH A 10 2710 74 HOH HOH . 
F 5 HOH A 11 2711 58 HOH HOH . 
F 5 HOH A 12 2712 48 HOH HOH . 
F 5 HOH A 13 2713 116 HOH HOH . 
F 5 HOH A 14 2714 30 HOH HOH . 
F 5 HOH A 15 2715 75 HOH HOH . 
F 5 HOH A 16 2716 43 HOH HOH . 
F 5 HOH A 17 2717 54 HOH HOH . 
F 5 HOH A 18 2718 26 HOH HOH . 
F 5 HOH A 19 2719 25 HOH HOH . 
F 5 HOH A 20 2720 20 HOH HOH . 
F 5 HOH A 21 2721 24 HOH HOH . 
F 5 HOH A 22 2722 31 HOH HOH . 
F 5 HOH A 23 2723 103 HOH HOH . 
F 5 HOH A 24 2724 23 HOH HOH . 
F 5 HOH A 25 2725 1 HOH HOH . 
F 5 HOH A 26 2726 78 HOH HOH . 
F 5 HOH A 27 2727 16 HOH HOH . 
F 5 HOH A 28 2728 46 HOH HOH . 
F 5 HOH A 29 2729 71 HOH HOH . 
F 5 HOH A 30 2730 21 HOH HOH . 
F 5 HOH A 31 2731 7 HOH HOH . 
F 5 HOH A 32 2732 63 HOH HOH . 
F 5 HOH A 33 2733 53 HOH HOH . 
F 5 HOH A 34 2734 11 HOH HOH . 
F 5 HOH A 35 2735 72 HOH HOH . 
F 5 HOH A 36 2736 50 HOH HOH . 
F 5 HOH A 37 2737 6 HOH HOH . 
F 5 HOH A 38 2738 15 HOH HOH . 
F 5 HOH A 39 2739 28 HOH HOH . 
F 5 HOH A 40 2740 5 HOH HOH . 
F 5 HOH A 41 2741 61 HOH HOH . 
F 5 HOH A 42 2742 8 HOH HOH . 
F 5 HOH A 43 2743 69 HOH HOH . 
F 5 HOH A 44 2744 83 HOH HOH . 
F 5 HOH A 45 2745 80 HOH HOH . 
F 5 HOH A 46 2746 39 HOH HOH . 
F 5 HOH A 47 2747 44 HOH HOH . 
F 5 HOH A 48 2748 9 HOH HOH . 
F 5 HOH A 49 2749 45 HOH HOH . 
F 5 HOH A 50 2750 59 HOH HOH . 
F 5 HOH A 51 2751 38 HOH HOH . 
F 5 HOH A 52 2752 2 HOH HOH . 
F 5 HOH A 53 2753 64 HOH HOH . 
F 5 HOH A 54 2754 18 HOH HOH . 
F 5 HOH A 55 2755 3 HOH HOH . 
F 5 HOH A 56 2756 34 HOH HOH . 
F 5 HOH A 57 2757 14 HOH HOH . 
F 5 HOH A 58 2758 105 HOH HOH . 
F 5 HOH A 59 2759 29 HOH HOH . 
F 5 HOH A 60 2760 62 HOH HOH . 
F 5 HOH A 61 2761 106 HOH HOH . 
F 5 HOH A 62 2762 10 HOH HOH . 
F 5 HOH A 63 2763 89 HOH HOH . 
F 5 HOH A 64 2764 51 HOH HOH . 
F 5 HOH A 65 2765 107 HOH HOH . 
F 5 HOH A 66 2766 112 HOH HOH . 
F 5 HOH A 67 2767 12 HOH HOH . 
F 5 HOH A 68 2768 88 HOH HOH . 
F 5 HOH A 69 2769 40 HOH HOH . 
F 5 HOH A 70 2770 4 HOH HOH . 
F 5 HOH A 71 2771 117 HOH HOH . 
F 5 HOH A 72 2772 79 HOH HOH . 
F 5 HOH A 73 2773 60 HOH HOH . 
F 5 HOH A 74 2774 41 HOH HOH . 
F 5 HOH A 75 2775 68 HOH HOH . 
F 5 HOH A 76 2776 13 HOH HOH . 
F 5 HOH A 77 2777 101 HOH HOH . 
F 5 HOH A 78 2778 57 HOH HOH . 
F 5 HOH A 79 2779 94 HOH HOH . 
F 5 HOH A 80 2780 42 HOH HOH . 
F 5 HOH A 81 2781 52 HOH HOH . 
F 5 HOH A 82 2782 32 HOH HOH . 
F 5 HOH A 83 2783 56 HOH HOH . 
F 5 HOH A 84 2784 67 HOH HOH . 
F 5 HOH A 85 2785 95 HOH HOH . 
F 5 HOH A 86 2786 99 HOH HOH . 
F 5 HOH A 87 2787 102 HOH HOH . 
F 5 HOH A 88 2788 36 HOH HOH . 
F 5 HOH A 89 2789 19 HOH HOH . 
F 5 HOH A 90 2790 17 HOH HOH . 
F 5 HOH A 91 2791 66 HOH HOH . 
F 5 HOH A 92 2792 70 HOH HOH . 
F 5 HOH A 93 2793 114 HOH HOH . 
F 5 HOH A 94 2794 35 HOH HOH . 
F 5 HOH A 95 2795 73 HOH HOH . 
F 5 HOH A 96 2796 91 HOH HOH . 
F 5 HOH A 97 2797 97 HOH HOH . 
F 5 HOH A 98 2798 85 HOH HOH . 
F 5 HOH A 99 2799 77 HOH HOH . 
F 5 HOH A 100 2800 104 HOH HOH . 
F 5 HOH A 101 2801 37 HOH HOH . 
F 5 HOH A 102 2802 98 HOH HOH . 
F 5 HOH A 103 2803 33 HOH HOH . 
F 5 HOH A 104 2804 111 HOH HOH . 
F 5 HOH A 105 2805 118 HOH HOH . 
F 5 HOH A 106 2806 100 HOH HOH . 
F 5 HOH A 107 2807 81 HOH HOH . 
F 5 HOH A 108 2808 82 HOH HOH . 
F 5 HOH A 109 2809 65 HOH HOH . 
F 5 HOH A 110 2810 109 HOH HOH . 
F 5 HOH A 111 2811 96 HOH HOH . 
F 5 HOH A 112 2812 113 HOH HOH . 
F 5 HOH A 113 2813 115 HOH HOH . 
F 5 HOH A 114 2814 93 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PG5 . . . C 3 -12.411 6.937 2.443 0.92 60.13 ? C1 PG5 2602 A 1 
HETATM 2 O O1 PG5 . . . C 3 -12.778 5.673 1.966 0.92 65.66 ? O1 PG5 2602 A 1 
HETATM 3 C C2 PG5 . . . C 3 -13.179 5.666 0.625 0.92 53.41 ? C2 PG5 2602 A 1 
HETATM 4 C C3 PG5 . . . C 3 -14.335 4.683 0.441 0.92 55.77 ? C3 PG5 2602 A 1 
HETATM 5 O O2 PG5 . . . C 3 -13.911 3.59 -0.325 0.92 58.58 ? O2 PG5 2602 A 1 
HETATM 6 C C4 PG5 . . . C 3 -12.896 2.835 0.275 0.92 62.87 ? C4 PG5 2602 A 1 
HETATM 7 C C5 PG5 . . . C 3 -12.36 1.804 -0.716 0.92 53.08 ? C5 PG5 2602 A 1 
HETATM 8 O O3 PG5 . . . C 3 -11.151 1.294 -0.231 0.92 58.15 ? O3 PG5 2602 A 1 
HETATM 9 C C6 PG5 . . . C 3 -10.132 2.25 -0.151 0.92 52.69 ? C6 PG5 2602 A 1 
HETATM 10 C C7 PG5 . . . C 3 -9.191 1.907 1.001 0.92 50.56 ? C7 PG5 2602 A 1 
HETATM 11 O O4 PG5 . . . C 3 -8.273 2.948 1.17 0.92 53.16 ? O4 PG5 2602 A 1 
HETATM 12 C C8 PG5 . . . C 3 -7.846 3.123 2.492 0.92 49.01 ? C8 PG5 2602 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#