data_7QM4 # _model_server_result.job_id DjUXPlFVcPFYlD2Tk0ndXQ _model_server_result.datetime_utc '2024-11-07 15:38:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qm4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2604}' # _entry.id 7QM4 # _exptl.entry_id 7QM4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.491 _cell.angle_gamma 90 _cell.entry_id 7QM4 _cell.length_a 45.954 _cell.length_b 74.071 _cell.length_c 53.319 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QM4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7QM4 _atom_sites.fract_transf_matrix[1][1] 0.021761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013501 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U1H A 1 2601 2601 U1H LIG . C 3 PG5 A 1 2602 2801 PG5 PG5 . D 4 DMS A 1 2603 3001 DMS DMS . E 4 DMS A 1 2604 3101 DMS DMS . F 5 HOH A 1 2701 119 HOH HOH . F 5 HOH A 2 2702 90 HOH HOH . F 5 HOH A 3 2703 49 HOH HOH . F 5 HOH A 4 2704 110 HOH HOH . F 5 HOH A 5 2705 76 HOH HOH . F 5 HOH A 6 2706 47 HOH HOH . F 5 HOH A 7 2707 22 HOH HOH . F 5 HOH A 8 2708 87 HOH HOH . F 5 HOH A 9 2709 27 HOH HOH . F 5 HOH A 10 2710 74 HOH HOH . F 5 HOH A 11 2711 58 HOH HOH . F 5 HOH A 12 2712 48 HOH HOH . F 5 HOH A 13 2713 116 HOH HOH . F 5 HOH A 14 2714 30 HOH HOH . F 5 HOH A 15 2715 75 HOH HOH . F 5 HOH A 16 2716 43 HOH HOH . F 5 HOH A 17 2717 54 HOH HOH . F 5 HOH A 18 2718 26 HOH HOH . F 5 HOH A 19 2719 25 HOH HOH . F 5 HOH A 20 2720 20 HOH HOH . F 5 HOH A 21 2721 24 HOH HOH . F 5 HOH A 22 2722 31 HOH HOH . F 5 HOH A 23 2723 103 HOH HOH . F 5 HOH A 24 2724 23 HOH HOH . F 5 HOH A 25 2725 1 HOH HOH . F 5 HOH A 26 2726 78 HOH HOH . F 5 HOH A 27 2727 16 HOH HOH . F 5 HOH A 28 2728 46 HOH HOH . F 5 HOH A 29 2729 71 HOH HOH . F 5 HOH A 30 2730 21 HOH HOH . F 5 HOH A 31 2731 7 HOH HOH . F 5 HOH A 32 2732 63 HOH HOH . F 5 HOH A 33 2733 53 HOH HOH . F 5 HOH A 34 2734 11 HOH HOH . F 5 HOH A 35 2735 72 HOH HOH . F 5 HOH A 36 2736 50 HOH HOH . F 5 HOH A 37 2737 6 HOH HOH . F 5 HOH A 38 2738 15 HOH HOH . F 5 HOH A 39 2739 28 HOH HOH . F 5 HOH A 40 2740 5 HOH HOH . F 5 HOH A 41 2741 61 HOH HOH . F 5 HOH A 42 2742 8 HOH HOH . F 5 HOH A 43 2743 69 HOH HOH . F 5 HOH A 44 2744 83 HOH HOH . F 5 HOH A 45 2745 80 HOH HOH . F 5 HOH A 46 2746 39 HOH HOH . F 5 HOH A 47 2747 44 HOH HOH . F 5 HOH A 48 2748 9 HOH HOH . F 5 HOH A 49 2749 45 HOH HOH . F 5 HOH A 50 2750 59 HOH HOH . F 5 HOH A 51 2751 38 HOH HOH . F 5 HOH A 52 2752 2 HOH HOH . F 5 HOH A 53 2753 64 HOH HOH . F 5 HOH A 54 2754 18 HOH HOH . F 5 HOH A 55 2755 3 HOH HOH . F 5 HOH A 56 2756 34 HOH HOH . F 5 HOH A 57 2757 14 HOH HOH . F 5 HOH A 58 2758 105 HOH HOH . F 5 HOH A 59 2759 29 HOH HOH . F 5 HOH A 60 2760 62 HOH HOH . F 5 HOH A 61 2761 106 HOH HOH . F 5 HOH A 62 2762 10 HOH HOH . F 5 HOH A 63 2763 89 HOH HOH . F 5 HOH A 64 2764 51 HOH HOH . F 5 HOH A 65 2765 107 HOH HOH . F 5 HOH A 66 2766 112 HOH HOH . F 5 HOH A 67 2767 12 HOH HOH . F 5 HOH A 68 2768 88 HOH HOH . F 5 HOH A 69 2769 40 HOH HOH . F 5 HOH A 70 2770 4 HOH HOH . F 5 HOH A 71 2771 117 HOH HOH . F 5 HOH A 72 2772 79 HOH HOH . F 5 HOH A 73 2773 60 HOH HOH . F 5 HOH A 74 2774 41 HOH HOH . F 5 HOH A 75 2775 68 HOH HOH . F 5 HOH A 76 2776 13 HOH HOH . F 5 HOH A 77 2777 101 HOH HOH . F 5 HOH A 78 2778 57 HOH HOH . F 5 HOH A 79 2779 94 HOH HOH . F 5 HOH A 80 2780 42 HOH HOH . F 5 HOH A 81 2781 52 HOH HOH . F 5 HOH A 82 2782 32 HOH HOH . F 5 HOH A 83 2783 56 HOH HOH . F 5 HOH A 84 2784 67 HOH HOH . F 5 HOH A 85 2785 95 HOH HOH . F 5 HOH A 86 2786 99 HOH HOH . F 5 HOH A 87 2787 102 HOH HOH . F 5 HOH A 88 2788 36 HOH HOH . F 5 HOH A 89 2789 19 HOH HOH . F 5 HOH A 90 2790 17 HOH HOH . F 5 HOH A 91 2791 66 HOH HOH . F 5 HOH A 92 2792 70 HOH HOH . F 5 HOH A 93 2793 114 HOH HOH . F 5 HOH A 94 2794 35 HOH HOH . F 5 HOH A 95 2795 73 HOH HOH . F 5 HOH A 96 2796 91 HOH HOH . F 5 HOH A 97 2797 97 HOH HOH . F 5 HOH A 98 2798 85 HOH HOH . F 5 HOH A 99 2799 77 HOH HOH . F 5 HOH A 100 2800 104 HOH HOH . F 5 HOH A 101 2801 37 HOH HOH . F 5 HOH A 102 2802 98 HOH HOH . F 5 HOH A 103 2803 33 HOH HOH . F 5 HOH A 104 2804 111 HOH HOH . F 5 HOH A 105 2805 118 HOH HOH . F 5 HOH A 106 2806 100 HOH HOH . F 5 HOH A 107 2807 81 HOH HOH . F 5 HOH A 108 2808 82 HOH HOH . F 5 HOH A 109 2809 65 HOH HOH . F 5 HOH A 110 2810 109 HOH HOH . F 5 HOH A 111 2811 96 HOH HOH . F 5 HOH A 112 2812 113 HOH HOH . F 5 HOH A 113 2813 115 HOH HOH . F 5 HOH A 114 2814 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 4 3.123 8.926 14.448 0.86 77.15 ? S DMS 2604 A 1 HETATM 2 O O DMS . . . E 4 4.425 8.27 14.31 0.86 58.94 ? O DMS 2604 A 1 HETATM 3 C C1 DMS . . . E 4 3.161 10.377 13.356 0.86 66.19 ? C1 DMS 2604 A 1 HETATM 4 C C2 DMS . . . E 4 1.948 7.93 13.488 0.86 72.3 ? C2 DMS 2604 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #