data_7QM7 # _model_server_result.job_id byEQn71rqqYvlZf7H1taQA _model_server_result.datetime_utc '2024-11-07 15:34:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2802}' # _entry.id 7QM7 # _exptl.entry_id 7QM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.792 _cell.angle_gamma 90 _cell.entry_id 7QM7 _cell.length_a 46.003 _cell.length_b 74.042 _cell.length_c 53.55 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.03 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7QM7 _atom_sites.fract_transf_matrix[1][1] 0.021738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007823 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013506 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG5 A 1 2801 2801 PG5 PG5 . C 3 DMS A 1 2802 2901 DMS DMS . D 3 DMS A 1 2803 3001 DMS DMS . E 3 DMS A 1 2804 3201 DMS DMS . F 4 U1H A 1 2805 3401 U1H LIG . G 3 DMS A 1 2806 3501 DMS DMS . H 3 DMS A 1 2807 3601 DMS DMS . I 5 HOH A 1 2901 86 HOH HOH . I 5 HOH A 2 2902 28 HOH HOH . I 5 HOH A 3 2903 113 HOH HOH . I 5 HOH A 4 2904 55 HOH HOH . I 5 HOH A 5 2905 104 HOH HOH . I 5 HOH A 6 2906 66 HOH HOH . I 5 HOH A 7 2907 190 HOH HOH . I 5 HOH A 8 2908 52 HOH HOH . I 5 HOH A 9 2909 67 HOH HOH . I 5 HOH A 10 2910 159 HOH HOH . I 5 HOH A 11 2911 110 HOH HOH . I 5 HOH A 12 2912 5 HOH HOH . I 5 HOH A 13 2913 21 HOH HOH . I 5 HOH A 14 2914 40 HOH HOH . I 5 HOH A 15 2915 100 HOH HOH . I 5 HOH A 16 2916 75 HOH HOH . I 5 HOH A 17 2917 53 HOH HOH . I 5 HOH A 18 2918 23 HOH HOH . I 5 HOH A 19 2919 130 HOH HOH . I 5 HOH A 20 2920 51 HOH HOH . I 5 HOH A 21 2921 61 HOH HOH . I 5 HOH A 22 2922 181 HOH HOH . I 5 HOH A 23 2923 142 HOH HOH . I 5 HOH A 24 2924 119 HOH HOH . I 5 HOH A 25 2925 19 HOH HOH . I 5 HOH A 26 2926 148 HOH HOH . I 5 HOH A 27 2927 82 HOH HOH . I 5 HOH A 28 2928 173 HOH HOH . I 5 HOH A 29 2929 178 HOH HOH . I 5 HOH A 30 2930 33 HOH HOH . I 5 HOH A 31 2931 116 HOH HOH . I 5 HOH A 32 2932 85 HOH HOH . I 5 HOH A 33 2933 124 HOH HOH . I 5 HOH A 34 2934 6 HOH HOH . I 5 HOH A 35 2935 22 HOH HOH . I 5 HOH A 36 2936 125 HOH HOH . I 5 HOH A 37 2937 26 HOH HOH . I 5 HOH A 38 2938 12 HOH HOH . I 5 HOH A 39 2939 13 HOH HOH . I 5 HOH A 40 2940 168 HOH HOH . I 5 HOH A 41 2941 10 HOH HOH . I 5 HOH A 42 2942 70 HOH HOH . I 5 HOH A 43 2943 80 HOH HOH . I 5 HOH A 44 2944 112 HOH HOH . I 5 HOH A 45 2945 49 HOH HOH . I 5 HOH A 46 2946 27 HOH HOH . I 5 HOH A 47 2947 56 HOH HOH . I 5 HOH A 48 2948 152 HOH HOH . I 5 HOH A 49 2949 7 HOH HOH . I 5 HOH A 50 2950 64 HOH HOH . I 5 HOH A 51 2951 48 HOH HOH . I 5 HOH A 52 2952 25 HOH HOH . I 5 HOH A 53 2953 30 HOH HOH . I 5 HOH A 54 2954 162 HOH HOH . I 5 HOH A 55 2955 47 HOH HOH . I 5 HOH A 56 2956 96 HOH HOH . I 5 HOH A 57 2957 93 HOH HOH . I 5 HOH A 58 2958 41 HOH HOH . I 5 HOH A 59 2959 60 HOH HOH . I 5 HOH A 60 2960 193 HOH HOH . I 5 HOH A 61 2961 186 HOH HOH . I 5 HOH A 62 2962 68 HOH HOH . I 5 HOH A 63 2963 24 HOH HOH . I 5 HOH A 64 2964 43 HOH HOH . I 5 HOH A 65 2965 11 HOH HOH . I 5 HOH A 66 2966 2 HOH HOH . I 5 HOH A 67 2967 65 HOH HOH . I 5 HOH A 68 2968 8 HOH HOH . I 5 HOH A 69 2969 102 HOH HOH . I 5 HOH A 70 2970 72 HOH HOH . I 5 HOH A 71 2971 4 HOH HOH . I 5 HOH A 72 2972 109 HOH HOH . I 5 HOH A 73 2973 42 HOH HOH . I 5 HOH A 74 2974 18 HOH HOH . I 5 HOH A 75 2975 16 HOH HOH . I 5 HOH A 76 2976 135 HOH HOH . I 5 HOH A 77 2977 17 HOH HOH . I 5 HOH A 78 2978 99 HOH HOH . I 5 HOH A 79 2979 62 HOH HOH . I 5 HOH A 80 2980 3 HOH HOH . I 5 HOH A 81 2981 46 HOH HOH . I 5 HOH A 82 2982 69 HOH HOH . I 5 HOH A 83 2983 153 HOH HOH . I 5 HOH A 84 2984 92 HOH HOH . I 5 HOH A 85 2985 1 HOH HOH . I 5 HOH A 86 2986 31 HOH HOH . I 5 HOH A 87 2987 160 HOH HOH . I 5 HOH A 88 2988 54 HOH HOH . I 5 HOH A 89 2989 118 HOH HOH . I 5 HOH A 90 2990 171 HOH HOH . I 5 HOH A 91 2991 15 HOH HOH . I 5 HOH A 92 2992 29 HOH HOH . I 5 HOH A 93 2993 9 HOH HOH . I 5 HOH A 94 2994 179 HOH HOH . I 5 HOH A 95 2995 45 HOH HOH . I 5 HOH A 96 2996 120 HOH HOH . I 5 HOH A 97 2997 76 HOH HOH . I 5 HOH A 98 2998 50 HOH HOH . I 5 HOH A 99 2999 180 HOH HOH . I 5 HOH A 100 3000 191 HOH HOH . I 5 HOH A 101 3001 108 HOH HOH . I 5 HOH A 102 3002 139 HOH HOH . I 5 HOH A 103 3003 14 HOH HOH . I 5 HOH A 104 3004 134 HOH HOH . I 5 HOH A 105 3005 101 HOH HOH . I 5 HOH A 106 3006 127 HOH HOH . I 5 HOH A 107 3007 78 HOH HOH . I 5 HOH A 108 3008 59 HOH HOH . I 5 HOH A 109 3009 32 HOH HOH . I 5 HOH A 110 3010 133 HOH HOH . I 5 HOH A 111 3011 183 HOH HOH . I 5 HOH A 112 3012 44 HOH HOH . I 5 HOH A 113 3013 103 HOH HOH . I 5 HOH A 114 3014 34 HOH HOH . I 5 HOH A 115 3015 63 HOH HOH . I 5 HOH A 116 3016 97 HOH HOH . I 5 HOH A 117 3017 58 HOH HOH . I 5 HOH A 118 3018 38 HOH HOH . I 5 HOH A 119 3019 105 HOH HOH . I 5 HOH A 120 3020 115 HOH HOH . I 5 HOH A 121 3021 89 HOH HOH . I 5 HOH A 122 3022 131 HOH HOH . I 5 HOH A 123 3023 73 HOH HOH . I 5 HOH A 124 3024 36 HOH HOH . I 5 HOH A 125 3025 126 HOH HOH . I 5 HOH A 126 3026 149 HOH HOH . I 5 HOH A 127 3027 106 HOH HOH . I 5 HOH A 128 3028 57 HOH HOH . I 5 HOH A 129 3029 35 HOH HOH . I 5 HOH A 130 3030 177 HOH HOH . I 5 HOH A 131 3031 20 HOH HOH . I 5 HOH A 132 3032 79 HOH HOH . I 5 HOH A 133 3033 114 HOH HOH . I 5 HOH A 134 3034 117 HOH HOH . I 5 HOH A 135 3035 163 HOH HOH . I 5 HOH A 136 3036 137 HOH HOH . I 5 HOH A 137 3037 192 HOH HOH . I 5 HOH A 138 3038 170 HOH HOH . I 5 HOH A 139 3039 83 HOH HOH . I 5 HOH A 140 3040 74 HOH HOH . I 5 HOH A 141 3041 84 HOH HOH . I 5 HOH A 142 3042 91 HOH HOH . I 5 HOH A 143 3043 174 HOH HOH . I 5 HOH A 144 3044 189 HOH HOH . I 5 HOH A 145 3045 39 HOH HOH . I 5 HOH A 146 3046 129 HOH HOH . I 5 HOH A 147 3047 94 HOH HOH . I 5 HOH A 148 3048 144 HOH HOH . I 5 HOH A 149 3049 188 HOH HOH . I 5 HOH A 150 3050 37 HOH HOH . I 5 HOH A 151 3051 128 HOH HOH . I 5 HOH A 152 3052 111 HOH HOH . I 5 HOH A 153 3053 138 HOH HOH . I 5 HOH A 154 3054 165 HOH HOH . I 5 HOH A 155 3055 158 HOH HOH . I 5 HOH A 156 3056 175 HOH HOH . I 5 HOH A 157 3057 156 HOH HOH . I 5 HOH A 158 3058 95 HOH HOH . I 5 HOH A 159 3059 150 HOH HOH . I 5 HOH A 160 3060 87 HOH HOH . I 5 HOH A 161 3061 88 HOH HOH . I 5 HOH A 162 3062 151 HOH HOH . I 5 HOH A 163 3063 90 HOH HOH . I 5 HOH A 164 3064 161 HOH HOH . I 5 HOH A 165 3065 122 HOH HOH . I 5 HOH A 166 3066 143 HOH HOH . I 5 HOH A 167 3067 98 HOH HOH . I 5 HOH A 168 3068 176 HOH HOH . I 5 HOH A 169 3069 182 HOH HOH . I 5 HOH A 170 3070 71 HOH HOH . I 5 HOH A 171 3071 107 HOH HOH . I 5 HOH A 172 3072 136 HOH HOH . I 5 HOH A 173 3073 154 HOH HOH . I 5 HOH A 174 3074 184 HOH HOH . I 5 HOH A 175 3075 157 HOH HOH . I 5 HOH A 176 3076 164 HOH HOH . I 5 HOH A 177 3077 81 HOH HOH . I 5 HOH A 178 3078 169 HOH HOH . I 5 HOH A 179 3079 132 HOH HOH . I 5 HOH A 180 3080 141 HOH HOH . I 5 HOH A 181 3081 147 HOH HOH . I 5 HOH A 182 3082 121 HOH HOH . I 5 HOH A 183 3083 167 HOH HOH . I 5 HOH A 184 3084 155 HOH HOH . I 5 HOH A 185 3085 140 HOH HOH . I 5 HOH A 186 3086 166 HOH HOH . I 5 HOH A 187 3087 77 HOH HOH . I 5 HOH A 188 3088 146 HOH HOH . I 5 HOH A 189 3089 123 HOH HOH . I 5 HOH A 190 3090 145 HOH HOH . I 5 HOH A 191 3091 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -4.512 3.098 5.894 0.78 40.21 ? S DMS 2802 A 1 HETATM 2 O O DMS . . . C 3 -3.607 4.025 5.208 0.78 36.44 ? O DMS 2802 A 1 HETATM 3 C C1 DMS . . . C 3 -3.503 1.688 6.432 0.78 36.78 ? C1 DMS 2802 A 1 HETATM 4 C C2 DMS . . . C 3 -4.835 3.823 7.527 0.78 46.19 ? C2 DMS 2802 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #