data_7QM8 # _model_server_result.job_id QYHNm200RytN9ZGTOOJL3Q _model_server_result.datetime_utc '2024-11-27 23:08:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qm8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2801}' # _entry.id 7QM8 # _exptl.entry_id 7QM8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.086 _cell.angle_gamma 90 _cell.entry_id 7QM8 _cell.length_a 45.96 _cell.length_b 74.323 _cell.length_c 53.754 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QM8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 O4' _chem_comp.formula_weight 178.226 _chem_comp.id PG5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PG5 sing 246 n n C1 H11 PG5 sing 247 n n C1 H12 PG5 sing 248 n n C1 H13 PG5 sing 249 n n O1 C2 PG5 sing 250 n n C2 C3 PG5 sing 251 n n C2 H21 PG5 sing 252 n n C2 H22 PG5 sing 253 n n C3 O2 PG5 sing 254 n n C3 H31 PG5 sing 255 n n C3 H32 PG5 sing 256 n n O2 C4 PG5 sing 257 n n C4 C5 PG5 sing 258 n n C4 H41 PG5 sing 259 n n C4 H42 PG5 sing 260 n n C5 O3 PG5 sing 261 n n C5 H51 PG5 sing 262 n n C5 H52 PG5 sing 263 n n O3 C6 PG5 sing 264 n n C6 C7 PG5 sing 265 n n C6 H61 PG5 sing 266 n n C6 H62 PG5 sing 267 n n C7 O4 PG5 sing 268 n n C7 H71 PG5 sing 269 n n C7 H72 PG5 sing 270 n n O4 C8 PG5 sing 271 n n C8 H81 PG5 sing 272 n n C8 H82 PG5 sing 273 n n C8 H83 PG5 sing 274 n n # _atom_sites.entry_id 7QM8 _atom_sites.fract_transf_matrix[1][1] 0.021758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007956 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013455 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG5 A 1 2801 2801 PG5 PG5 . C 3 DMS A 1 2802 2901 DMS DMS . D 3 DMS A 1 2803 3001 DMS DMS . E 4 U1H A 1 2804 3401 U1H LIG . F 3 DMS A 1 2805 3501 DMS DMS . G 5 HOH A 1 2901 52 HOH HOH . G 5 HOH A 2 2902 66 HOH HOH . G 5 HOH A 3 2903 100 HOH HOH . G 5 HOH A 4 2904 124 HOH HOH . G 5 HOH A 5 2905 62 HOH HOH . G 5 HOH A 6 2906 55 HOH HOH . G 5 HOH A 7 2907 61 HOH HOH . G 5 HOH A 8 2908 53 HOH HOH . G 5 HOH A 9 2909 23 HOH HOH . G 5 HOH A 10 2910 119 HOH HOH . G 5 HOH A 11 2911 26 HOH HOH . G 5 HOH A 12 2912 49 HOH HOH . G 5 HOH A 13 2913 113 HOH HOH . G 5 HOH A 14 2914 28 HOH HOH . G 5 HOH A 15 2915 40 HOH HOH . G 5 HOH A 16 2916 21 HOH HOH . G 5 HOH A 17 2917 29 HOH HOH . G 5 HOH A 18 2918 168 HOH HOH . G 5 HOH A 19 2919 72 HOH HOH . G 5 HOH A 20 2920 33 HOH HOH . G 5 HOH A 21 2921 48 HOH HOH . G 5 HOH A 22 2922 7 HOH HOH . G 5 HOH A 23 2923 193 HOH HOH . G 5 HOH A 24 2924 86 HOH HOH . G 5 HOH A 25 2925 58 HOH HOH . G 5 HOH A 26 2926 27 HOH HOH . G 5 HOH A 27 2927 75 HOH HOH . G 5 HOH A 28 2928 2 HOH HOH . G 5 HOH A 29 2929 109 HOH HOH . G 5 HOH A 30 2930 32 HOH HOH . G 5 HOH A 31 2931 82 HOH HOH . G 5 HOH A 32 2932 25 HOH HOH . G 5 HOH A 33 2933 30 HOH HOH . G 5 HOH A 34 2934 125 HOH HOH . G 5 HOH A 35 2935 60 HOH HOH . G 5 HOH A 36 2936 22 HOH HOH . G 5 HOH A 37 2937 5 HOH HOH . G 5 HOH A 38 2938 131 HOH HOH . G 5 HOH A 39 2939 8 HOH HOH . G 5 HOH A 40 2940 18 HOH HOH . G 5 HOH A 41 2941 116 HOH HOH . G 5 HOH A 42 2942 17 HOH HOH . G 5 HOH A 43 2943 19 HOH HOH . G 5 HOH A 44 2944 160 HOH HOH . G 5 HOH A 45 2945 56 HOH HOH . G 5 HOH A 46 2946 68 HOH HOH . G 5 HOH A 47 2947 67 HOH HOH . G 5 HOH A 48 2948 64 HOH HOH . G 5 HOH A 49 2949 102 HOH HOH . G 5 HOH A 50 2950 43 HOH HOH . G 5 HOH A 51 2951 10 HOH HOH . G 5 HOH A 52 2952 3 HOH HOH . G 5 HOH A 53 2953 112 HOH HOH . G 5 HOH A 54 2954 12 HOH HOH . G 5 HOH A 55 2955 181 HOH HOH . G 5 HOH A 56 2956 191 HOH HOH . G 5 HOH A 57 2957 80 HOH HOH . G 5 HOH A 58 2958 104 HOH HOH . G 5 HOH A 59 2959 51 HOH HOH . G 5 HOH A 60 2960 47 HOH HOH . G 5 HOH A 61 2961 41 HOH HOH . G 5 HOH A 62 2962 96 HOH HOH . G 5 HOH A 63 2963 171 HOH HOH . G 5 HOH A 64 2964 173 HOH HOH . G 5 HOH A 65 2965 101 HOH HOH . G 5 HOH A 66 2966 179 HOH HOH . G 5 HOH A 67 2967 1 HOH HOH . G 5 HOH A 68 2968 170 HOH HOH . G 5 HOH A 69 2969 126 HOH HOH . G 5 HOH A 70 2970 44 HOH HOH . G 5 HOH A 71 2971 6 HOH HOH . G 5 HOH A 72 2972 11 HOH HOH . G 5 HOH A 73 2973 152 HOH HOH . G 5 HOH A 74 2974 148 HOH HOH . G 5 HOH A 75 2975 190 HOH HOH . G 5 HOH A 76 2976 137 HOH HOH . G 5 HOH A 77 2977 50 HOH HOH . G 5 HOH A 78 2978 106 HOH HOH . G 5 HOH A 79 2979 15 HOH HOH . G 5 HOH A 80 2980 4 HOH HOH . G 5 HOH A 81 2981 97 HOH HOH . G 5 HOH A 82 2982 79 HOH HOH . G 5 HOH A 83 2983 69 HOH HOH . G 5 HOH A 84 2984 57 HOH HOH . G 5 HOH A 85 2985 78 HOH HOH . G 5 HOH A 86 2986 142 HOH HOH . G 5 HOH A 87 2987 16 HOH HOH . G 5 HOH A 88 2988 31 HOH HOH . G 5 HOH A 89 2989 118 HOH HOH . G 5 HOH A 90 2990 95 HOH HOH . G 5 HOH A 91 2991 183 HOH HOH . G 5 HOH A 92 2992 138 HOH HOH . G 5 HOH A 93 2993 105 HOH HOH . G 5 HOH A 94 2994 159 HOH HOH . G 5 HOH A 95 2995 108 HOH HOH . G 5 HOH A 96 2996 186 HOH HOH . G 5 HOH A 97 2997 92 HOH HOH . G 5 HOH A 98 2998 128 HOH HOH . G 5 HOH A 99 2999 110 HOH HOH . G 5 HOH A 100 3000 34 HOH HOH . G 5 HOH A 101 3001 90 HOH HOH . G 5 HOH A 102 3002 38 HOH HOH . G 5 HOH A 103 3003 65 HOH HOH . G 5 HOH A 104 3004 178 HOH HOH . G 5 HOH A 105 3005 13 HOH HOH . G 5 HOH A 106 3006 46 HOH HOH . G 5 HOH A 107 3007 24 HOH HOH . G 5 HOH A 108 3008 9 HOH HOH . G 5 HOH A 109 3009 103 HOH HOH . G 5 HOH A 110 3010 70 HOH HOH . G 5 HOH A 111 3011 93 HOH HOH . G 5 HOH A 112 3012 153 HOH HOH . G 5 HOH A 113 3013 188 HOH HOH . G 5 HOH A 114 3014 20 HOH HOH . G 5 HOH A 115 3015 133 HOH HOH . G 5 HOH A 116 3016 177 HOH HOH . G 5 HOH A 117 3017 99 HOH HOH . G 5 HOH A 118 3018 87 HOH HOH . G 5 HOH A 119 3019 73 HOH HOH . G 5 HOH A 120 3020 189 HOH HOH . G 5 HOH A 121 3021 36 HOH HOH . G 5 HOH A 122 3022 162 HOH HOH . G 5 HOH A 123 3023 76 HOH HOH . G 5 HOH A 124 3024 74 HOH HOH . G 5 HOH A 125 3025 163 HOH HOH . G 5 HOH A 126 3026 14 HOH HOH . G 5 HOH A 127 3027 115 HOH HOH . G 5 HOH A 128 3028 59 HOH HOH . G 5 HOH A 129 3029 94 HOH HOH . G 5 HOH A 130 3030 134 HOH HOH . G 5 HOH A 131 3031 84 HOH HOH . G 5 HOH A 132 3032 129 HOH HOH . G 5 HOH A 133 3033 130 HOH HOH . G 5 HOH A 134 3034 35 HOH HOH . G 5 HOH A 135 3035 71 HOH HOH . G 5 HOH A 136 3036 63 HOH HOH . G 5 HOH A 137 3037 161 HOH HOH . G 5 HOH A 138 3038 117 HOH HOH . G 5 HOH A 139 3039 144 HOH HOH . G 5 HOH A 140 3040 42 HOH HOH . G 5 HOH A 141 3041 54 HOH HOH . G 5 HOH A 142 3042 120 HOH HOH . G 5 HOH A 143 3043 111 HOH HOH . G 5 HOH A 144 3044 45 HOH HOH . G 5 HOH A 145 3045 135 HOH HOH . G 5 HOH A 146 3046 180 HOH HOH . G 5 HOH A 147 3047 154 HOH HOH . G 5 HOH A 148 3048 91 HOH HOH . G 5 HOH A 149 3049 192 HOH HOH . G 5 HOH A 150 3050 139 HOH HOH . G 5 HOH A 151 3051 175 HOH HOH . G 5 HOH A 152 3052 85 HOH HOH . G 5 HOH A 153 3053 37 HOH HOH . G 5 HOH A 154 3054 39 HOH HOH . G 5 HOH A 155 3055 89 HOH HOH . G 5 HOH A 156 3056 127 HOH HOH . G 5 HOH A 157 3057 182 HOH HOH . G 5 HOH A 158 3058 83 HOH HOH . G 5 HOH A 159 3059 88 HOH HOH . G 5 HOH A 160 3060 158 HOH HOH . G 5 HOH A 161 3061 114 HOH HOH . G 5 HOH A 162 3062 149 HOH HOH . G 5 HOH A 163 3063 143 HOH HOH . G 5 HOH A 164 3064 147 HOH HOH . G 5 HOH A 165 3065 174 HOH HOH . G 5 HOH A 166 3066 122 HOH HOH . G 5 HOH A 167 3067 151 HOH HOH . G 5 HOH A 168 3068 132 HOH HOH . G 5 HOH A 169 3069 107 HOH HOH . G 5 HOH A 170 3070 156 HOH HOH . G 5 HOH A 171 3071 195 HOH HOH . G 5 HOH A 172 3072 184 HOH HOH . G 5 HOH A 173 3073 165 HOH HOH . G 5 HOH A 174 3074 136 HOH HOH . G 5 HOH A 175 3075 176 HOH HOH . G 5 HOH A 176 3076 150 HOH HOH . G 5 HOH A 177 3077 98 HOH HOH . G 5 HOH A 178 3078 194 HOH HOH . G 5 HOH A 179 3079 157 HOH HOH . G 5 HOH A 180 3080 141 HOH HOH . G 5 HOH A 181 3081 164 HOH HOH . G 5 HOH A 182 3082 169 HOH HOH . G 5 HOH A 183 3083 121 HOH HOH . G 5 HOH A 184 3084 166 HOH HOH . G 5 HOH A 185 3085 81 HOH HOH . G 5 HOH A 186 3086 167 HOH HOH . G 5 HOH A 187 3087 77 HOH HOH . G 5 HOH A 188 3088 155 HOH HOH . G 5 HOH A 189 3089 123 HOH HOH . G 5 HOH A 190 3090 140 HOH HOH . G 5 HOH A 191 3091 145 HOH HOH . G 5 HOH A 192 3092 146 HOH HOH . G 5 HOH A 193 3093 172 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PG5 . . . B 2 -12.94 5.935 0.947 0.64 44.02 ? C1 PG5 2801 A 1 HETATM 2 O O1 PG5 . . . B 2 -13.073 4.567 0.674 0.64 51.04 ? O1 PG5 2801 A 1 HETATM 3 C C2 PG5 . . . B 2 -13.978 4.284 -0.359 0.64 41.82 ? C2 PG5 2801 A 1 HETATM 4 C C3 PG5 . . . B 2 -14.093 2.771 -0.547 0.64 40.86 ? C3 PG5 2801 A 1 HETATM 5 O O2 PG5 . . . B 2 -12.882 2.23 -1.005 0.64 52.13 ? O2 PG5 2801 A 1 HETATM 6 C C4 PG5 . . . B 2 -12.217 1.458 -0.037 0.64 48.4 ? C4 PG5 2801 A 1 HETATM 7 C C5 PG5 . . . B 2 -10.968 0.794 -0.617 0.64 42.46 ? C5 PG5 2801 A 1 HETATM 8 O O3 PG5 . . . B 2 -9.891 0.93 0.28 0.64 46.18 ? O3 PG5 2801 A 1 HETATM 9 C C6 PG5 . . . B 2 -9.421 2.249 0.377 0.64 45.18 ? C6 PG5 2801 A 1 HETATM 10 C C7 PG5 . . . B 2 -8.086 2.303 1.118 0.64 37.58 ? C7 PG5 2801 A 1 HETATM 11 O O4 PG5 . . . B 2 -7.993 3.534 1.78 0.64 46.83 ? O4 PG5 2801 A 1 HETATM 12 C C8 PG5 . . . B 2 -6.875 3.664 2.614 0.64 28.7 ? C8 PG5 2801 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #