data_7QMD # _model_server_result.job_id 3sMtls3YygOe9ewCYvrvHA _model_server_result.datetime_utc '2024-11-07 16:07:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qmd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2601}' # _entry.id 7QMD # _exptl.entry_id 7QMD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(trifluoromethyl)phenyl]methanamine' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.417 _cell.angle_gamma 90 _cell.entry_id 7QMD _cell.length_a 45.9 _cell.length_b 74.012 _cell.length_c 53.314 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QMD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.037 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H8 F3 N' _chem_comp.formula_weight 175.151 _chem_comp.id U1H _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(trifluoromethyl)phenyl]methanamine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(Trifluoromethyl)benzylamine;p-trifluoromethylbenzylamine;4-Aminomethylbenzotrifluoride # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F10 C07 U1H sing 396 n n N01 C02 U1H sing 397 n n C11 C12 U1H doub 398 n y C11 C06 U1H sing 399 n y C12 C03 U1H sing 400 n y C07 F09 U1H sing 401 n n C07 C06 U1H sing 402 n n C07 F08 U1H sing 403 n n C06 C05 U1H doub 404 n y C03 C02 U1H sing 405 n n C03 C04 U1H doub 406 n y C05 C04 U1H sing 407 n y C02 H1 U1H sing 408 n n C02 H2 U1H sing 409 n n C04 H3 U1H sing 410 n n C05 H4 U1H sing 411 n n C11 H5 U1H sing 412 n n C12 H6 U1H sing 413 n n N01 H7 U1H sing 414 n n N01 H8 U1H sing 415 n n # _atom_sites.entry_id 7QMD _atom_sites.fract_transf_matrix[1][1] 0.021786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00768 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019888 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U1H A 1 2601 2601 U1H LIG . C 3 PG5 A 1 2602 2801 PG5 PG5 . D 4 DMS A 1 2603 2901 DMS DMS . E 4 DMS A 1 2604 3001 DMS DMS . F 4 DMS A 1 2605 3101 DMS DMS . G 2 U1H A 1 2606 3401 U1H LIG . H 5 HOH A 1 2701 53 HOH HOH . H 5 HOH A 2 2702 93 HOH HOH . H 5 HOH A 3 2703 64 HOH HOH . H 5 HOH A 4 2704 67 HOH HOH . H 5 HOH A 5 2705 55 HOH HOH . H 5 HOH A 6 2706 78 HOH HOH . H 5 HOH A 7 2707 139 HOH HOH . H 5 HOH A 8 2708 83 HOH HOH . H 5 HOH A 9 2709 29 HOH HOH . H 5 HOH A 10 2710 80 HOH HOH . H 5 HOH A 11 2711 18 HOH HOH . H 5 HOH A 12 2712 108 HOH HOH . H 5 HOH A 13 2713 5 HOH HOH . H 5 HOH A 14 2714 72 HOH HOH . H 5 HOH A 15 2715 3 HOH HOH . H 5 HOH A 16 2716 134 HOH HOH . H 5 HOH A 17 2717 27 HOH HOH . H 5 HOH A 18 2718 49 HOH HOH . H 5 HOH A 19 2719 130 HOH HOH . H 5 HOH A 20 2720 61 HOH HOH . H 5 HOH A 21 2721 11 HOH HOH . H 5 HOH A 22 2722 95 HOH HOH . H 5 HOH A 23 2723 28 HOH HOH . H 5 HOH A 24 2724 21 HOH HOH . H 5 HOH A 25 2725 100 HOH HOH . H 5 HOH A 26 2726 48 HOH HOH . H 5 HOH A 27 2727 74 HOH HOH . H 5 HOH A 28 2728 52 HOH HOH . H 5 HOH A 29 2729 101 HOH HOH . H 5 HOH A 30 2730 22 HOH HOH . H 5 HOH A 31 2731 62 HOH HOH . H 5 HOH A 32 2732 26 HOH HOH . H 5 HOH A 33 2733 33 HOH HOH . H 5 HOH A 34 2734 32 HOH HOH . H 5 HOH A 35 2735 17 HOH HOH . H 5 HOH A 36 2736 23 HOH HOH . H 5 HOH A 37 2737 119 HOH HOH . H 5 HOH A 38 2738 99 HOH HOH . H 5 HOH A 39 2739 19 HOH HOH . H 5 HOH A 40 2740 25 HOH HOH . H 5 HOH A 41 2741 43 HOH HOH . H 5 HOH A 42 2742 91 HOH HOH . H 5 HOH A 43 2743 2 HOH HOH . H 5 HOH A 44 2744 50 HOH HOH . H 5 HOH A 45 2745 12 HOH HOH . H 5 HOH A 46 2746 60 HOH HOH . H 5 HOH A 47 2747 92 HOH HOH . H 5 HOH A 48 2748 133 HOH HOH . H 5 HOH A 49 2749 7 HOH HOH . H 5 HOH A 50 2750 69 HOH HOH . H 5 HOH A 51 2751 40 HOH HOH . H 5 HOH A 52 2752 76 HOH HOH . H 5 HOH A 53 2753 89 HOH HOH . H 5 HOH A 54 2754 34 HOH HOH . H 5 HOH A 55 2755 13 HOH HOH . H 5 HOH A 56 2756 68 HOH HOH . H 5 HOH A 57 2757 42 HOH HOH . H 5 HOH A 58 2758 1 HOH HOH . H 5 HOH A 59 2759 58 HOH HOH . H 5 HOH A 60 2760 56 HOH HOH . H 5 HOH A 61 2761 8 HOH HOH . H 5 HOH A 62 2762 6 HOH HOH . H 5 HOH A 63 2763 24 HOH HOH . H 5 HOH A 64 2764 9 HOH HOH . H 5 HOH A 65 2765 57 HOH HOH . H 5 HOH A 66 2766 30 HOH HOH . H 5 HOH A 67 2767 70 HOH HOH . H 5 HOH A 68 2768 79 HOH HOH . H 5 HOH A 69 2769 88 HOH HOH . H 5 HOH A 70 2770 71 HOH HOH . H 5 HOH A 71 2771 45 HOH HOH . H 5 HOH A 72 2772 112 HOH HOH . H 5 HOH A 73 2773 41 HOH HOH . H 5 HOH A 74 2774 31 HOH HOH . H 5 HOH A 75 2775 47 HOH HOH . H 5 HOH A 76 2776 16 HOH HOH . H 5 HOH A 77 2777 85 HOH HOH . H 5 HOH A 78 2778 15 HOH HOH . H 5 HOH A 79 2779 44 HOH HOH . H 5 HOH A 80 2780 96 HOH HOH . H 5 HOH A 81 2781 4 HOH HOH . H 5 HOH A 82 2782 123 HOH HOH . H 5 HOH A 83 2783 36 HOH HOH . H 5 HOH A 84 2784 73 HOH HOH . H 5 HOH A 85 2785 98 HOH HOH . H 5 HOH A 86 2786 111 HOH HOH . H 5 HOH A 87 2787 46 HOH HOH . H 5 HOH A 88 2788 82 HOH HOH . H 5 HOH A 89 2789 84 HOH HOH . H 5 HOH A 90 2790 54 HOH HOH . H 5 HOH A 91 2791 51 HOH HOH . H 5 HOH A 92 2792 94 HOH HOH . H 5 HOH A 93 2793 10 HOH HOH . H 5 HOH A 94 2794 14 HOH HOH . H 5 HOH A 95 2795 97 HOH HOH . H 5 HOH A 96 2796 20 HOH HOH . H 5 HOH A 97 2797 118 HOH HOH . H 5 HOH A 98 2798 122 HOH HOH . H 5 HOH A 99 2799 39 HOH HOH . H 5 HOH A 100 2800 87 HOH HOH . H 5 HOH A 101 2801 81 HOH HOH . H 5 HOH A 102 2802 115 HOH HOH . H 5 HOH A 103 2803 106 HOH HOH . H 5 HOH A 104 2804 37 HOH HOH . H 5 HOH A 105 2805 35 HOH HOH . H 5 HOH A 106 2806 59 HOH HOH . H 5 HOH A 107 2807 129 HOH HOH . H 5 HOH A 108 2808 65 HOH HOH . H 5 HOH A 109 2809 125 HOH HOH . H 5 HOH A 110 2810 66 HOH HOH . H 5 HOH A 111 2811 109 HOH HOH . H 5 HOH A 112 2812 113 HOH HOH . H 5 HOH A 113 2813 103 HOH HOH . H 5 HOH A 114 2814 136 HOH HOH . H 5 HOH A 115 2815 105 HOH HOH . H 5 HOH A 116 2816 121 HOH HOH . H 5 HOH A 117 2817 132 HOH HOH . H 5 HOH A 118 2818 104 HOH HOH . H 5 HOH A 119 2819 75 HOH HOH . H 5 HOH A 120 2820 63 HOH HOH . H 5 HOH A 121 2821 38 HOH HOH . H 5 HOH A 122 2822 90 HOH HOH . H 5 HOH A 123 2823 135 HOH HOH . H 5 HOH A 124 2824 138 HOH HOH . H 5 HOH A 125 2825 137 HOH HOH . H 5 HOH A 126 2826 128 HOH HOH . H 5 HOH A 127 2827 116 HOH HOH . H 5 HOH A 128 2828 131 HOH HOH . H 5 HOH A 129 2829 127 HOH HOH . H 5 HOH A 130 2830 117 HOH HOH . H 5 HOH A 131 2831 107 HOH HOH . H 5 HOH A 132 2832 126 HOH HOH . H 5 HOH A 133 2833 86 HOH HOH . H 5 HOH A 134 2834 120 HOH HOH . H 5 HOH A 135 2835 77 HOH HOH . H 5 HOH A 136 2836 110 HOH HOH . H 5 HOH A 137 2837 114 HOH HOH . H 5 HOH A 138 2838 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 U1H . . . B 2 2.298 5.611 9.928 0.72 36.21 ? C02 U1H 2601 A 1 HETATM 2 C C03 U1H . . . B 2 1.983 7.089 9.702 0.72 42.58 ? C03 U1H 2601 A 1 HETATM 3 C C04 U1H . . . B 2 3.018 7.999 9.57 0.72 43.33 ? C04 U1H 2601 A 1 HETATM 4 C C05 U1H . . . B 2 2.741 9.34 9.369 0.72 49.17 ? C05 U1H 2601 A 1 HETATM 5 C C06 U1H . . . B 2 1.429 9.774 9.297 0.72 52.44 ? C06 U1H 2601 A 1 HETATM 6 C C07 U1H . . . B 2 1.147 11.259 9.077 0.72 59.04 ? C07 U1H 2601 A 1 HETATM 7 C C11 U1H . . . B 2 0.391 8.866 9.43 0.72 53.28 ? C11 U1H 2601 A 1 HETATM 8 C C12 U1H . . . B 2 0.668 7.523 9.633 0.72 48.19 ? C12 U1H 2601 A 1 HETATM 9 F F08 U1H . . . B 2 1.893 11.707 8.025 0.72 59.18 ? F08 U1H 2601 A 1 HETATM 10 F F09 U1H . . . B 2 -0.178 11.458 8.817 0.72 58.1 ? F09 U1H 2601 A 1 HETATM 11 F F10 U1H . . . B 2 1.493 11.947 10.203 0.72 62.82 ? F10 U1H 2601 A 1 HETATM 12 N N01 U1H . . . B 2 2.159 4.852 8.701 0.72 28.5 ? N01 U1H 2601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #