data_7QMD
#
_model_server_result.job_id            Ke6hUbE3YB44bxPEfRyIPA 
_model_server_result.datetime_utc      '2024-11-07 15:35:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qmd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2605}' 
#
_entry.id    7QMD 
#
_exptl.entry_id    7QMD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.417 
_cell.angle_gamma         90 
_cell.entry_id            7QMD 
_cell.length_a            45.9 
_cell.length_b            74.012 
_cell.length_c            53.314 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QMD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             344 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              255 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             379 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              290 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.037 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     7QMD 
_atom_sites.fract_transf_matrix[1][1]    0.021786 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00768 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013511 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019888 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 U1H A 1 2601 2601 U1H LIG . 
C 3 PG5 A 1 2602 2801 PG5 PG5 . 
D 4 DMS A 1 2603 2901 DMS DMS . 
E 4 DMS A 1 2604 3001 DMS DMS . 
F 4 DMS A 1 2605 3101 DMS DMS . 
G 2 U1H A 1 2606 3401 U1H LIG . 
H 5 HOH A 1 2701 53 HOH HOH . 
H 5 HOH A 2 2702 93 HOH HOH . 
H 5 HOH A 3 2703 64 HOH HOH . 
H 5 HOH A 4 2704 67 HOH HOH . 
H 5 HOH A 5 2705 55 HOH HOH . 
H 5 HOH A 6 2706 78 HOH HOH . 
H 5 HOH A 7 2707 139 HOH HOH . 
H 5 HOH A 8 2708 83 HOH HOH . 
H 5 HOH A 9 2709 29 HOH HOH . 
H 5 HOH A 10 2710 80 HOH HOH . 
H 5 HOH A 11 2711 18 HOH HOH . 
H 5 HOH A 12 2712 108 HOH HOH . 
H 5 HOH A 13 2713 5 HOH HOH . 
H 5 HOH A 14 2714 72 HOH HOH . 
H 5 HOH A 15 2715 3 HOH HOH . 
H 5 HOH A 16 2716 134 HOH HOH . 
H 5 HOH A 17 2717 27 HOH HOH . 
H 5 HOH A 18 2718 49 HOH HOH . 
H 5 HOH A 19 2719 130 HOH HOH . 
H 5 HOH A 20 2720 61 HOH HOH . 
H 5 HOH A 21 2721 11 HOH HOH . 
H 5 HOH A 22 2722 95 HOH HOH . 
H 5 HOH A 23 2723 28 HOH HOH . 
H 5 HOH A 24 2724 21 HOH HOH . 
H 5 HOH A 25 2725 100 HOH HOH . 
H 5 HOH A 26 2726 48 HOH HOH . 
H 5 HOH A 27 2727 74 HOH HOH . 
H 5 HOH A 28 2728 52 HOH HOH . 
H 5 HOH A 29 2729 101 HOH HOH . 
H 5 HOH A 30 2730 22 HOH HOH . 
H 5 HOH A 31 2731 62 HOH HOH . 
H 5 HOH A 32 2732 26 HOH HOH . 
H 5 HOH A 33 2733 33 HOH HOH . 
H 5 HOH A 34 2734 32 HOH HOH . 
H 5 HOH A 35 2735 17 HOH HOH . 
H 5 HOH A 36 2736 23 HOH HOH . 
H 5 HOH A 37 2737 119 HOH HOH . 
H 5 HOH A 38 2738 99 HOH HOH . 
H 5 HOH A 39 2739 19 HOH HOH . 
H 5 HOH A 40 2740 25 HOH HOH . 
H 5 HOH A 41 2741 43 HOH HOH . 
H 5 HOH A 42 2742 91 HOH HOH . 
H 5 HOH A 43 2743 2 HOH HOH . 
H 5 HOH A 44 2744 50 HOH HOH . 
H 5 HOH A 45 2745 12 HOH HOH . 
H 5 HOH A 46 2746 60 HOH HOH . 
H 5 HOH A 47 2747 92 HOH HOH . 
H 5 HOH A 48 2748 133 HOH HOH . 
H 5 HOH A 49 2749 7 HOH HOH . 
H 5 HOH A 50 2750 69 HOH HOH . 
H 5 HOH A 51 2751 40 HOH HOH . 
H 5 HOH A 52 2752 76 HOH HOH . 
H 5 HOH A 53 2753 89 HOH HOH . 
H 5 HOH A 54 2754 34 HOH HOH . 
H 5 HOH A 55 2755 13 HOH HOH . 
H 5 HOH A 56 2756 68 HOH HOH . 
H 5 HOH A 57 2757 42 HOH HOH . 
H 5 HOH A 58 2758 1 HOH HOH . 
H 5 HOH A 59 2759 58 HOH HOH . 
H 5 HOH A 60 2760 56 HOH HOH . 
H 5 HOH A 61 2761 8 HOH HOH . 
H 5 HOH A 62 2762 6 HOH HOH . 
H 5 HOH A 63 2763 24 HOH HOH . 
H 5 HOH A 64 2764 9 HOH HOH . 
H 5 HOH A 65 2765 57 HOH HOH . 
H 5 HOH A 66 2766 30 HOH HOH . 
H 5 HOH A 67 2767 70 HOH HOH . 
H 5 HOH A 68 2768 79 HOH HOH . 
H 5 HOH A 69 2769 88 HOH HOH . 
H 5 HOH A 70 2770 71 HOH HOH . 
H 5 HOH A 71 2771 45 HOH HOH . 
H 5 HOH A 72 2772 112 HOH HOH . 
H 5 HOH A 73 2773 41 HOH HOH . 
H 5 HOH A 74 2774 31 HOH HOH . 
H 5 HOH A 75 2775 47 HOH HOH . 
H 5 HOH A 76 2776 16 HOH HOH . 
H 5 HOH A 77 2777 85 HOH HOH . 
H 5 HOH A 78 2778 15 HOH HOH . 
H 5 HOH A 79 2779 44 HOH HOH . 
H 5 HOH A 80 2780 96 HOH HOH . 
H 5 HOH A 81 2781 4 HOH HOH . 
H 5 HOH A 82 2782 123 HOH HOH . 
H 5 HOH A 83 2783 36 HOH HOH . 
H 5 HOH A 84 2784 73 HOH HOH . 
H 5 HOH A 85 2785 98 HOH HOH . 
H 5 HOH A 86 2786 111 HOH HOH . 
H 5 HOH A 87 2787 46 HOH HOH . 
H 5 HOH A 88 2788 82 HOH HOH . 
H 5 HOH A 89 2789 84 HOH HOH . 
H 5 HOH A 90 2790 54 HOH HOH . 
H 5 HOH A 91 2791 51 HOH HOH . 
H 5 HOH A 92 2792 94 HOH HOH . 
H 5 HOH A 93 2793 10 HOH HOH . 
H 5 HOH A 94 2794 14 HOH HOH . 
H 5 HOH A 95 2795 97 HOH HOH . 
H 5 HOH A 96 2796 20 HOH HOH . 
H 5 HOH A 97 2797 118 HOH HOH . 
H 5 HOH A 98 2798 122 HOH HOH . 
H 5 HOH A 99 2799 39 HOH HOH . 
H 5 HOH A 100 2800 87 HOH HOH . 
H 5 HOH A 101 2801 81 HOH HOH . 
H 5 HOH A 102 2802 115 HOH HOH . 
H 5 HOH A 103 2803 106 HOH HOH . 
H 5 HOH A 104 2804 37 HOH HOH . 
H 5 HOH A 105 2805 35 HOH HOH . 
H 5 HOH A 106 2806 59 HOH HOH . 
H 5 HOH A 107 2807 129 HOH HOH . 
H 5 HOH A 108 2808 65 HOH HOH . 
H 5 HOH A 109 2809 125 HOH HOH . 
H 5 HOH A 110 2810 66 HOH HOH . 
H 5 HOH A 111 2811 109 HOH HOH . 
H 5 HOH A 112 2812 113 HOH HOH . 
H 5 HOH A 113 2813 103 HOH HOH . 
H 5 HOH A 114 2814 136 HOH HOH . 
H 5 HOH A 115 2815 105 HOH HOH . 
H 5 HOH A 116 2816 121 HOH HOH . 
H 5 HOH A 117 2817 132 HOH HOH . 
H 5 HOH A 118 2818 104 HOH HOH . 
H 5 HOH A 119 2819 75 HOH HOH . 
H 5 HOH A 120 2820 63 HOH HOH . 
H 5 HOH A 121 2821 38 HOH HOH . 
H 5 HOH A 122 2822 90 HOH HOH . 
H 5 HOH A 123 2823 135 HOH HOH . 
H 5 HOH A 124 2824 138 HOH HOH . 
H 5 HOH A 125 2825 137 HOH HOH . 
H 5 HOH A 126 2826 128 HOH HOH . 
H 5 HOH A 127 2827 116 HOH HOH . 
H 5 HOH A 128 2828 131 HOH HOH . 
H 5 HOH A 129 2829 127 HOH HOH . 
H 5 HOH A 130 2830 117 HOH HOH . 
H 5 HOH A 131 2831 107 HOH HOH . 
H 5 HOH A 132 2832 126 HOH HOH . 
H 5 HOH A 133 2833 86 HOH HOH . 
H 5 HOH A 134 2834 120 HOH HOH . 
H 5 HOH A 135 2835 77 HOH HOH . 
H 5 HOH A 136 2836 110 HOH HOH . 
H 5 HOH A 137 2837 114 HOH HOH . 
H 5 HOH A 138 2838 102 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . F 4 3.527 8.851 14.326 0.52 51.93 ? S DMS 2605 A 1 
HETATM 2 O O DMS . . . F 4 4.706 8.092 13.903 0.52 43.42 ? O DMS 2605 A 1 
HETATM 3 C C1 DMS . . . F 4 3.474 10.338 13.285 0.52 48 ? C1 DMS 2605 A 1 
HETATM 4 C C2 DMS . . . F 4 2.094 8.006 13.604 0.52 51.14 ? C2 DMS 2605 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#