data_7QME # _model_server_result.job_id Vcmxu1_UlFmVgl23vN4qVA _model_server_result.datetime_utc '2024-11-07 15:51:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qme # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2602}' # _entry.id 7QME # _exptl.entry_id 7QME _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.373 _cell.angle_gamma 90 _cell.entry_id 7QME _cell.length_a 45.921 _cell.length_b 74.048 _cell.length_c 53.342 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QME _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.052 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 O4' _chem_comp.formula_weight 178.226 _chem_comp.id PG5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PG5 sing 246 n n C1 H11 PG5 sing 247 n n C1 H12 PG5 sing 248 n n C1 H13 PG5 sing 249 n n O1 C2 PG5 sing 250 n n C2 C3 PG5 sing 251 n n C2 H21 PG5 sing 252 n n C2 H22 PG5 sing 253 n n C3 O2 PG5 sing 254 n n C3 H31 PG5 sing 255 n n C3 H32 PG5 sing 256 n n O2 C4 PG5 sing 257 n n C4 C5 PG5 sing 258 n n C4 H41 PG5 sing 259 n n C4 H42 PG5 sing 260 n n C5 O3 PG5 sing 261 n n C5 H51 PG5 sing 262 n n C5 H52 PG5 sing 263 n n O3 C6 PG5 sing 264 n n C6 C7 PG5 sing 265 n n C6 H61 PG5 sing 266 n n C6 H62 PG5 sing 267 n n C7 O4 PG5 sing 268 n n C7 H71 PG5 sing 269 n n C7 H72 PG5 sing 270 n n O4 C8 PG5 sing 271 n n C8 H81 PG5 sing 272 n n C8 H82 PG5 sing 273 n n C8 H83 PG5 sing 274 n n # _atom_sites.entry_id 7QME _atom_sites.fract_transf_matrix[1][1] 0.021777 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007657 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013505 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019872 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U1H A 1 2601 2601 U1H LIG . C 3 PG5 A 1 2602 2801 PG5 PG5 . D 4 DMS A 1 2603 2901 DMS DMS . E 4 DMS A 1 2604 3001 DMS DMS . F 4 DMS A 1 2605 3101 DMS DMS . G 2 U1H A 1 2606 3401 U1H LIG . H 5 HOH A 1 2701 112 HOH HOH . H 5 HOH A 2 2702 141 HOH HOH . H 5 HOH A 3 2703 76 HOH HOH . H 5 HOH A 4 2704 132 HOH HOH . H 5 HOH A 5 2705 49 HOH HOH . H 5 HOH A 6 2706 17 HOH HOH . H 5 HOH A 7 2707 60 HOH HOH . H 5 HOH A 8 2708 62 HOH HOH . H 5 HOH A 9 2709 116 HOH HOH . H 5 HOH A 10 2710 110 HOH HOH . H 5 HOH A 11 2711 20 HOH HOH . H 5 HOH A 12 2712 48 HOH HOH . H 5 HOH A 13 2713 27 HOH HOH . H 5 HOH A 14 2714 50 HOH HOH . H 5 HOH A 15 2715 93 HOH HOH . H 5 HOH A 16 2716 10 HOH HOH . H 5 HOH A 17 2717 51 HOH HOH . H 5 HOH A 18 2718 18 HOH HOH . H 5 HOH A 19 2719 101 HOH HOH . H 5 HOH A 20 2720 30 HOH HOH . H 5 HOH A 21 2721 99 HOH HOH . H 5 HOH A 22 2722 45 HOH HOH . H 5 HOH A 23 2723 82 HOH HOH . H 5 HOH A 24 2724 104 HOH HOH . H 5 HOH A 25 2725 72 HOH HOH . H 5 HOH A 26 2726 24 HOH HOH . H 5 HOH A 27 2727 97 HOH HOH . H 5 HOH A 28 2728 26 HOH HOH . H 5 HOH A 29 2729 31 HOH HOH . H 5 HOH A 30 2730 16 HOH HOH . H 5 HOH A 31 2731 32 HOH HOH . H 5 HOH A 32 2732 115 HOH HOH . H 5 HOH A 33 2733 40 HOH HOH . H 5 HOH A 34 2734 64 HOH HOH . H 5 HOH A 35 2735 42 HOH HOH . H 5 HOH A 36 2736 109 HOH HOH . H 5 HOH A 37 2737 58 HOH HOH . H 5 HOH A 38 2738 2 HOH HOH . H 5 HOH A 39 2739 29 HOH HOH . H 5 HOH A 40 2740 85 HOH HOH . H 5 HOH A 41 2741 53 HOH HOH . H 5 HOH A 42 2742 83 HOH HOH . H 5 HOH A 43 2743 28 HOH HOH . H 5 HOH A 44 2744 25 HOH HOH . H 5 HOH A 45 2745 46 HOH HOH . H 5 HOH A 46 2746 57 HOH HOH . H 5 HOH A 47 2747 87 HOH HOH . H 5 HOH A 48 2748 8 HOH HOH . H 5 HOH A 49 2749 22 HOH HOH . H 5 HOH A 50 2750 15 HOH HOH . H 5 HOH A 51 2751 81 HOH HOH . H 5 HOH A 52 2752 21 HOH HOH . H 5 HOH A 53 2753 44 HOH HOH . H 5 HOH A 54 2754 52 HOH HOH . H 5 HOH A 55 2755 137 HOH HOH . H 5 HOH A 56 2756 1 HOH HOH . H 5 HOH A 57 2757 71 HOH HOH . H 5 HOH A 58 2758 12 HOH HOH . H 5 HOH A 59 2759 6 HOH HOH . H 5 HOH A 60 2760 75 HOH HOH . H 5 HOH A 61 2761 35 HOH HOH . H 5 HOH A 62 2762 43 HOH HOH . H 5 HOH A 63 2763 65 HOH HOH . H 5 HOH A 64 2764 66 HOH HOH . H 5 HOH A 65 2765 3 HOH HOH . H 5 HOH A 66 2766 69 HOH HOH . H 5 HOH A 67 2767 56 HOH HOH . H 5 HOH A 68 2768 54 HOH HOH . H 5 HOH A 69 2769 11 HOH HOH . H 5 HOH A 70 2770 41 HOH HOH . H 5 HOH A 71 2771 67 HOH HOH . H 5 HOH A 72 2772 95 HOH HOH . H 5 HOH A 73 2773 14 HOH HOH . H 5 HOH A 74 2774 39 HOH HOH . H 5 HOH A 75 2775 88 HOH HOH . H 5 HOH A 76 2776 7 HOH HOH . H 5 HOH A 77 2777 5 HOH HOH . H 5 HOH A 78 2778 23 HOH HOH . H 5 HOH A 79 2779 127 HOH HOH . H 5 HOH A 80 2780 79 HOH HOH . H 5 HOH A 81 2781 33 HOH HOH . H 5 HOH A 82 2782 9 HOH HOH . H 5 HOH A 83 2783 118 HOH HOH . H 5 HOH A 84 2784 4 HOH HOH . H 5 HOH A 85 2785 121 HOH HOH . H 5 HOH A 86 2786 86 HOH HOH . H 5 HOH A 87 2787 63 HOH HOH . H 5 HOH A 88 2788 73 HOH HOH . H 5 HOH A 89 2789 19 HOH HOH . H 5 HOH A 90 2790 37 HOH HOH . H 5 HOH A 91 2791 61 HOH HOH . H 5 HOH A 92 2792 47 HOH HOH . H 5 HOH A 93 2793 133 HOH HOH . H 5 HOH A 94 2794 92 HOH HOH . H 5 HOH A 95 2795 74 HOH HOH . H 5 HOH A 96 2796 89 HOH HOH . H 5 HOH A 97 2797 36 HOH HOH . H 5 HOH A 98 2798 140 HOH HOH . H 5 HOH A 99 2799 13 HOH HOH . H 5 HOH A 100 2800 105 HOH HOH . H 5 HOH A 101 2801 55 HOH HOH . H 5 HOH A 102 2802 68 HOH HOH . H 5 HOH A 103 2803 91 HOH HOH . H 5 HOH A 104 2804 102 HOH HOH . H 5 HOH A 105 2805 78 HOH HOH . H 5 HOH A 106 2806 120 HOH HOH . H 5 HOH A 107 2807 38 HOH HOH . H 5 HOH A 108 2808 100 HOH HOH . H 5 HOH A 109 2809 103 HOH HOH . H 5 HOH A 110 2810 119 HOH HOH . H 5 HOH A 111 2811 59 HOH HOH . H 5 HOH A 112 2812 108 HOH HOH . H 5 HOH A 113 2813 34 HOH HOH . H 5 HOH A 114 2814 106 HOH HOH . H 5 HOH A 115 2815 134 HOH HOH . H 5 HOH A 116 2816 123 HOH HOH . H 5 HOH A 117 2817 113 HOH HOH . H 5 HOH A 118 2818 143 HOH HOH . H 5 HOH A 119 2819 96 HOH HOH . H 5 HOH A 120 2820 77 HOH HOH . H 5 HOH A 121 2821 131 HOH HOH . H 5 HOH A 122 2822 111 HOH HOH . H 5 HOH A 123 2823 80 HOH HOH . H 5 HOH A 124 2824 114 HOH HOH . H 5 HOH A 125 2825 139 HOH HOH . H 5 HOH A 126 2826 84 HOH HOH . H 5 HOH A 127 2827 144 HOH HOH . H 5 HOH A 128 2828 70 HOH HOH . H 5 HOH A 129 2829 130 HOH HOH . H 5 HOH A 130 2830 94 HOH HOH . H 5 HOH A 131 2831 142 HOH HOH . H 5 HOH A 132 2832 122 HOH HOH . H 5 HOH A 133 2833 124 HOH HOH . H 5 HOH A 134 2834 129 HOH HOH . H 5 HOH A 135 2835 136 HOH HOH . H 5 HOH A 136 2836 90 HOH HOH . H 5 HOH A 137 2837 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PG5 . . . C 3 -12.246 7.259 2.196 0.73 57.19 ? C1 PG5 2602 A 1 HETATM 2 O O1 PG5 . . . C 3 -12.982 6.096 1.926 0.73 67.47 ? O1 PG5 2602 A 1 HETATM 3 C C2 PG5 . . . C 3 -13.234 5.871 0.567 0.73 57.26 ? C2 PG5 2602 A 1 HETATM 4 C C3 PG5 . . . C 3 -14.415 4.914 0.4 0.73 54.74 ? C3 PG5 2602 A 1 HETATM 5 O O2 PG5 . . . C 3 -14.017 3.792 -0.344 0.73 61.19 ? O2 PG5 2602 A 1 HETATM 6 C C4 PG5 . . . C 3 -13 3.046 0.265 0.73 51.97 ? C4 PG5 2602 A 1 HETATM 7 C C5 PG5 . . . C 3 -12.46 1.983 -0.688 0.73 51.55 ? C5 PG5 2602 A 1 HETATM 8 O O3 PG5 . . . C 3 -11.27 1.446 -0.172 0.73 53.5 ? O3 PG5 2602 A 1 HETATM 9 C C6 PG5 . . . C 3 -10.227 2.379 -0.028 0.73 53.51 ? C6 PG5 2602 A 1 HETATM 10 C C7 PG5 . . . C 3 -9.172 1.901 0.97 0.73 48.18 ? C7 PG5 2602 A 1 HETATM 11 O O4 PG5 . . . C 3 -8.182 2.887 1.11 0.73 50.18 ? O4 PG5 2602 A 1 HETATM 12 C C8 PG5 . . . C 3 -7.828 3.212 2.429 0.73 44.68 ? C8 PG5 2602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #