data_7QMI
#
_model_server_result.job_id            gZNWwZTewiDSOq0gdSC9mg 
_model_server_result.datetime_utc      '2024-11-24 06:56:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qmi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2604}' 
#
_entry.id    7QMI 
#
_exptl.entry_id    7QMI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.594 
_cell.angle_gamma         90 
_cell.entry_id            7QMI 
_cell.length_a            45.86 
_cell.length_b            74.009 
_cell.length_c            53.458 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QMI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             344 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              255 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             379 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              290 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.036 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     7QMI 
_atom_sites.fract_transf_matrix[1][1]    0.021805 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007762 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013512 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019856 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 U1H A 1 2601 2601 U1H LIG . 
C 3 PG5 A 1 2602 2801 PG5 PG5 . 
D 4 DMS A 1 2603 2901 DMS DMS . 
E 4 DMS A 1 2604 3001 DMS DMS . 
F 4 DMS A 1 2605 3101 DMS DMS . 
G 2 U1H A 1 2606 3401 U1H LIG . 
H 5 HOH A 1 2701 72 HOH HOH . 
H 5 HOH A 2 2702 122 HOH HOH . 
H 5 HOH A 3 2703 73 HOH HOH . 
H 5 HOH A 4 2704 177 HOH HOH . 
H 5 HOH A 5 2705 77 HOH HOH . 
H 5 HOH A 6 2706 67 HOH HOH . 
H 5 HOH A 7 2707 52 HOH HOH . 
H 5 HOH A 8 2708 186 HOH HOH . 
H 5 HOH A 9 2709 53 HOH HOH . 
H 5 HOH A 10 2710 174 HOH HOH . 
H 5 HOH A 11 2711 112 HOH HOH . 
H 5 HOH A 12 2712 76 HOH HOH . 
H 5 HOH A 13 2713 79 HOH HOH . 
H 5 HOH A 14 2714 63 HOH HOH . 
H 5 HOH A 15 2715 27 HOH HOH . 
H 5 HOH A 16 2716 128 HOH HOH . 
H 5 HOH A 17 2717 18 HOH HOH . 
H 5 HOH A 18 2718 61 HOH HOH . 
H 5 HOH A 19 2719 48 HOH HOH . 
H 5 HOH A 20 2720 5 HOH HOH . 
H 5 HOH A 21 2721 60 HOH HOH . 
H 5 HOH A 22 2722 25 HOH HOH . 
H 5 HOH A 23 2723 81 HOH HOH . 
H 5 HOH A 24 2724 33 HOH HOH . 
H 5 HOH A 25 2725 138 HOH HOH . 
H 5 HOH A 26 2726 23 HOH HOH . 
H 5 HOH A 27 2727 26 HOH HOH . 
H 5 HOH A 28 2728 28 HOH HOH . 
H 5 HOH A 29 2729 7 HOH HOH . 
H 5 HOH A 30 2730 21 HOH HOH . 
H 5 HOH A 31 2731 65 HOH HOH . 
H 5 HOH A 32 2732 148 HOH HOH . 
H 5 HOH A 33 2733 1 HOH HOH . 
H 5 HOH A 34 2734 16 HOH HOH . 
H 5 HOH A 35 2735 12 HOH HOH . 
H 5 HOH A 36 2736 30 HOH HOH . 
H 5 HOH A 37 2737 123 HOH HOH . 
H 5 HOH A 38 2738 40 HOH HOH . 
H 5 HOH A 39 2739 29 HOH HOH . 
H 5 HOH A 40 2740 141 HOH HOH . 
H 5 HOH A 41 2741 11 HOH HOH . 
H 5 HOH A 42 2742 159 HOH HOH . 
H 5 HOH A 43 2743 22 HOH HOH . 
H 5 HOH A 44 2744 49 HOH HOH . 
H 5 HOH A 45 2745 93 HOH HOH . 
H 5 HOH A 46 2746 51 HOH HOH . 
H 5 HOH A 47 2747 70 HOH HOH . 
H 5 HOH A 48 2748 111 HOH HOH . 
H 5 HOH A 49 2749 134 HOH HOH . 
H 5 HOH A 50 2750 69 HOH HOH . 
H 5 HOH A 51 2751 59 HOH HOH . 
H 5 HOH A 52 2752 54 HOH HOH . 
H 5 HOH A 53 2753 109 HOH HOH . 
H 5 HOH A 54 2754 17 HOH HOH . 
H 5 HOH A 55 2755 185 HOH HOH . 
H 5 HOH A 56 2756 2 HOH HOH . 
H 5 HOH A 57 2757 181 HOH HOH . 
H 5 HOH A 58 2758 39 HOH HOH . 
H 5 HOH A 59 2759 74 HOH HOH . 
H 5 HOH A 60 2760 32 HOH HOH . 
H 5 HOH A 61 2761 3 HOH HOH . 
H 5 HOH A 62 2762 91 HOH HOH . 
H 5 HOH A 63 2763 119 HOH HOH . 
H 5 HOH A 64 2764 13 HOH HOH . 
H 5 HOH A 65 2765 6 HOH HOH . 
H 5 HOH A 66 2766 145 HOH HOH . 
H 5 HOH A 67 2767 105 HOH HOH . 
H 5 HOH A 68 2768 171 HOH HOH . 
H 5 HOH A 69 2769 103 HOH HOH . 
H 5 HOH A 70 2770 42 HOH HOH . 
H 5 HOH A 71 2771 90 HOH HOH . 
H 5 HOH A 72 2772 50 HOH HOH . 
H 5 HOH A 73 2773 84 HOH HOH . 
H 5 HOH A 74 2774 8 HOH HOH . 
H 5 HOH A 75 2775 15 HOH HOH . 
H 5 HOH A 76 2776 99 HOH HOH . 
H 5 HOH A 77 2777 19 HOH HOH . 
H 5 HOH A 78 2778 47 HOH HOH . 
H 5 HOH A 79 2779 101 HOH HOH . 
H 5 HOH A 80 2780 58 HOH HOH . 
H 5 HOH A 81 2781 102 HOH HOH . 
H 5 HOH A 82 2782 160 HOH HOH . 
H 5 HOH A 83 2783 85 HOH HOH . 
H 5 HOH A 84 2784 71 HOH HOH . 
H 5 HOH A 85 2785 68 HOH HOH . 
H 5 HOH A 86 2786 36 HOH HOH . 
H 5 HOH A 87 2787 4 HOH HOH . 
H 5 HOH A 88 2788 169 HOH HOH . 
H 5 HOH A 89 2789 46 HOH HOH . 
H 5 HOH A 90 2790 9 HOH HOH . 
H 5 HOH A 91 2791 31 HOH HOH . 
H 5 HOH A 92 2792 106 HOH HOH . 
H 5 HOH A 93 2793 55 HOH HOH . 
H 5 HOH A 94 2794 24 HOH HOH . 
H 5 HOH A 95 2795 43 HOH HOH . 
H 5 HOH A 96 2796 10 HOH HOH . 
H 5 HOH A 97 2797 34 HOH HOH . 
H 5 HOH A 98 2798 41 HOH HOH . 
H 5 HOH A 99 2799 92 HOH HOH . 
H 5 HOH A 100 2800 66 HOH HOH . 
H 5 HOH A 101 2801 139 HOH HOH . 
H 5 HOH A 102 2802 149 HOH HOH . 
H 5 HOH A 103 2803 144 HOH HOH . 
H 5 HOH A 104 2804 56 HOH HOH . 
H 5 HOH A 105 2805 86 HOH HOH . 
H 5 HOH A 106 2806 121 HOH HOH . 
H 5 HOH A 107 2807 183 HOH HOH . 
H 5 HOH A 108 2808 14 HOH HOH . 
H 5 HOH A 109 2809 118 HOH HOH . 
H 5 HOH A 110 2810 130 HOH HOH . 
H 5 HOH A 111 2811 44 HOH HOH . 
H 5 HOH A 112 2812 156 HOH HOH . 
H 5 HOH A 113 2813 20 HOH HOH . 
H 5 HOH A 114 2814 64 HOH HOH . 
H 5 HOH A 115 2815 173 HOH HOH . 
H 5 HOH A 116 2816 78 HOH HOH . 
H 5 HOH A 117 2817 172 HOH HOH . 
H 5 HOH A 118 2818 45 HOH HOH . 
H 5 HOH A 119 2819 89 HOH HOH . 
H 5 HOH A 120 2820 161 HOH HOH . 
H 5 HOH A 121 2821 82 HOH HOH . 
H 5 HOH A 122 2822 37 HOH HOH . 
H 5 HOH A 123 2823 153 HOH HOH . 
H 5 HOH A 124 2824 83 HOH HOH . 
H 5 HOH A 125 2825 35 HOH HOH . 
H 5 HOH A 126 2826 104 HOH HOH . 
H 5 HOH A 127 2827 184 HOH HOH . 
H 5 HOH A 128 2828 176 HOH HOH . 
H 5 HOH A 129 2829 117 HOH HOH . 
H 5 HOH A 130 2830 110 HOH HOH . 
H 5 HOH A 131 2831 98 HOH HOH . 
H 5 HOH A 132 2832 114 HOH HOH . 
H 5 HOH A 133 2833 38 HOH HOH . 
H 5 HOH A 134 2834 107 HOH HOH . 
H 5 HOH A 135 2835 129 HOH HOH . 
H 5 HOH A 136 2836 116 HOH HOH . 
H 5 HOH A 137 2837 166 HOH HOH . 
H 5 HOH A 138 2838 175 HOH HOH . 
H 5 HOH A 139 2839 57 HOH HOH . 
H 5 HOH A 140 2840 150 HOH HOH . 
H 5 HOH A 141 2841 162 HOH HOH . 
H 5 HOH A 142 2842 96 HOH HOH . 
H 5 HOH A 143 2843 142 HOH HOH . 
H 5 HOH A 144 2844 189 HOH HOH . 
H 5 HOH A 145 2845 62 HOH HOH . 
H 5 HOH A 146 2846 147 HOH HOH . 
H 5 HOH A 147 2847 154 HOH HOH . 
H 5 HOH A 148 2848 126 HOH HOH . 
H 5 HOH A 149 2849 146 HOH HOH . 
H 5 HOH A 150 2850 95 HOH HOH . 
H 5 HOH A 151 2851 108 HOH HOH . 
H 5 HOH A 152 2852 133 HOH HOH . 
H 5 HOH A 153 2853 124 HOH HOH . 
H 5 HOH A 154 2854 125 HOH HOH . 
H 5 HOH A 155 2855 80 HOH HOH . 
H 5 HOH A 156 2856 157 HOH HOH . 
H 5 HOH A 157 2857 158 HOH HOH . 
H 5 HOH A 158 2858 100 HOH HOH . 
H 5 HOH A 159 2859 152 HOH HOH . 
H 5 HOH A 160 2860 167 HOH HOH . 
H 5 HOH A 161 2861 97 HOH HOH . 
H 5 HOH A 162 2862 143 HOH HOH . 
H 5 HOH A 163 2863 140 HOH HOH . 
H 5 HOH A 164 2864 164 HOH HOH . 
H 5 HOH A 165 2865 75 HOH HOH . 
H 5 HOH A 166 2866 155 HOH HOH . 
H 5 HOH A 167 2867 120 HOH HOH . 
H 5 HOH A 168 2868 178 HOH HOH . 
H 5 HOH A 169 2869 151 HOH HOH . 
H 5 HOH A 170 2870 188 HOH HOH . 
H 5 HOH A 171 2871 87 HOH HOH . 
H 5 HOH A 172 2872 168 HOH HOH . 
H 5 HOH A 173 2873 170 HOH HOH . 
H 5 HOH A 174 2874 180 HOH HOH . 
H 5 HOH A 175 2875 94 HOH HOH . 
H 5 HOH A 176 2876 135 HOH HOH . 
H 5 HOH A 177 2877 88 HOH HOH . 
H 5 HOH A 178 2878 131 HOH HOH . 
H 5 HOH A 179 2879 113 HOH HOH . 
H 5 HOH A 180 2880 127 HOH HOH . 
H 5 HOH A 181 2881 163 HOH HOH . 
H 5 HOH A 182 2882 132 HOH HOH . 
H 5 HOH A 183 2883 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 4 -3.522 9.064 6.938 0.66 59.03 ? S DMS 2604 A 1 
HETATM 2 O O DMS . . . E 4 -3.252 7.711 6.449 0.66 51.35 ? O DMS 2604 A 1 
HETATM 3 C C1 DMS . . . E 4 -1.936 9.936 6.884 0.66 53.28 ? C1 DMS 2604 A 1 
HETATM 4 C C2 DMS . . . E 4 -4.329 9.949 5.576 0.66 44.96 ? C2 DMS 2604 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#