data_7QMK # _model_server_result.job_id zSenA31xo-bK_aX4U2MiFQ _model_server_result.datetime_utc '2024-11-07 16:42:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qmk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2602}' # _entry.id 7QMK # _exptl.entry_id 7QMK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.62 _cell.angle_gamma 90 _cell.entry_id 7QMK _cell.length_a 45.81 _cell.length_b 73.971 _cell.length_c 53.448 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QMK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18 O4' _chem_comp.formula_weight 178.226 _chem_comp.id PG5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PG5 sing 246 n n C1 H11 PG5 sing 247 n n C1 H12 PG5 sing 248 n n C1 H13 PG5 sing 249 n n O1 C2 PG5 sing 250 n n C2 C3 PG5 sing 251 n n C2 H21 PG5 sing 252 n n C2 H22 PG5 sing 253 n n C3 O2 PG5 sing 254 n n C3 H31 PG5 sing 255 n n C3 H32 PG5 sing 256 n n O2 C4 PG5 sing 257 n n C4 C5 PG5 sing 258 n n C4 H41 PG5 sing 259 n n C4 H42 PG5 sing 260 n n C5 O3 PG5 sing 261 n n C5 H51 PG5 sing 262 n n C5 H52 PG5 sing 263 n n O3 C6 PG5 sing 264 n n C6 C7 PG5 sing 265 n n C6 H61 PG5 sing 266 n n C6 H62 PG5 sing 267 n n C7 O4 PG5 sing 268 n n C7 H71 PG5 sing 269 n n C7 H72 PG5 sing 270 n n O4 C8 PG5 sing 271 n n C8 H81 PG5 sing 272 n n C8 H82 PG5 sing 273 n n C8 H83 PG5 sing 274 n n # _atom_sites.entry_id 7QMK _atom_sites.fract_transf_matrix[1][1] 0.021829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007782 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U1H A 1 2601 2601 U1H LIG . C 3 PG5 A 1 2602 2801 PG5 PG5 . D 4 DMS A 1 2603 2901 DMS DMS . E 4 DMS A 1 2604 3001 DMS DMS . F 4 DMS A 1 2605 3101 DMS DMS . G 2 U1H A 1 2606 3401 U1H LIG . H 5 HOH A 1 2701 155 HOH HOH . H 5 HOH A 2 2702 72 HOH HOH . H 5 HOH A 3 2703 144 HOH HOH . H 5 HOH A 4 2704 96 HOH HOH . H 5 HOH A 5 2705 53 HOH HOH . H 5 HOH A 6 2706 69 HOH HOH . H 5 HOH A 7 2707 199 HOH HOH . H 5 HOH A 8 2708 161 HOH HOH . H 5 HOH A 9 2709 52 HOH HOH . H 5 HOH A 10 2710 186 HOH HOH . H 5 HOH A 11 2711 83 HOH HOH . H 5 HOH A 12 2712 159 HOH HOH . H 5 HOH A 13 2713 76 HOH HOH . H 5 HOH A 14 2714 79 HOH HOH . H 5 HOH A 15 2715 164 HOH HOH . H 5 HOH A 16 2716 147 HOH HOH . H 5 HOH A 17 2717 173 HOH HOH . H 5 HOH A 18 2718 26 HOH HOH . H 5 HOH A 19 2719 107 HOH HOH . H 5 HOH A 20 2720 75 HOH HOH . H 5 HOH A 21 2721 223 HOH HOH . H 5 HOH A 22 2722 25 HOH HOH . H 5 HOH A 23 2723 28 HOH HOH . H 5 HOH A 24 2724 61 HOH HOH . H 5 HOH A 25 2725 5 HOH HOH . H 5 HOH A 26 2726 27 HOH HOH . H 5 HOH A 27 2727 148 HOH HOH . H 5 HOH A 28 2728 150 HOH HOH . H 5 HOH A 29 2729 48 HOH HOH . H 5 HOH A 30 2730 99 HOH HOH . H 5 HOH A 31 2731 116 HOH HOH . H 5 HOH A 32 2732 1 HOH HOH . H 5 HOH A 33 2733 21 HOH HOH . H 5 HOH A 34 2734 86 HOH HOH . H 5 HOH A 35 2735 62 HOH HOH . H 5 HOH A 36 2736 65 HOH HOH . H 5 HOH A 37 2737 129 HOH HOH . H 5 HOH A 38 2738 102 HOH HOH . H 5 HOH A 39 2739 33 HOH HOH . H 5 HOH A 40 2740 18 HOH HOH . H 5 HOH A 41 2741 22 HOH HOH . H 5 HOH A 42 2742 40 HOH HOH . H 5 HOH A 43 2743 23 HOH HOH . H 5 HOH A 44 2744 170 HOH HOH . H 5 HOH A 45 2745 219 HOH HOH . H 5 HOH A 46 2746 43 HOH HOH . H 5 HOH A 47 2747 104 HOH HOH . H 5 HOH A 48 2748 130 HOH HOH . H 5 HOH A 49 2749 222 HOH HOH . H 5 HOH A 50 2750 67 HOH HOH . H 5 HOH A 51 2751 7 HOH HOH . H 5 HOH A 52 2752 60 HOH HOH . H 5 HOH A 53 2753 70 HOH HOH . H 5 HOH A 54 2754 3 HOH HOH . H 5 HOH A 55 2755 71 HOH HOH . H 5 HOH A 56 2756 183 HOH HOH . H 5 HOH A 57 2757 19 HOH HOH . H 5 HOH A 58 2758 118 HOH HOH . H 5 HOH A 59 2759 113 HOH HOH . H 5 HOH A 60 2760 30 HOH HOH . H 5 HOH A 61 2761 193 HOH HOH . H 5 HOH A 62 2762 11 HOH HOH . H 5 HOH A 63 2763 123 HOH HOH . H 5 HOH A 64 2764 110 HOH HOH . H 5 HOH A 65 2765 145 HOH HOH . H 5 HOH A 66 2766 47 HOH HOH . H 5 HOH A 67 2767 131 HOH HOH . H 5 HOH A 68 2768 16 HOH HOH . H 5 HOH A 69 2769 91 HOH HOH . H 5 HOH A 70 2770 17 HOH HOH . H 5 HOH A 71 2771 12 HOH HOH . H 5 HOH A 72 2772 77 HOH HOH . H 5 HOH A 73 2773 128 HOH HOH . H 5 HOH A 74 2774 58 HOH HOH . H 5 HOH A 75 2775 54 HOH HOH . H 5 HOH A 76 2776 6 HOH HOH . H 5 HOH A 77 2777 51 HOH HOH . H 5 HOH A 78 2778 74 HOH HOH . H 5 HOH A 79 2779 49 HOH HOH . H 5 HOH A 80 2780 149 HOH HOH . H 5 HOH A 81 2781 4 HOH HOH . H 5 HOH A 82 2782 32 HOH HOH . H 5 HOH A 83 2783 68 HOH HOH . H 5 HOH A 84 2784 216 HOH HOH . H 5 HOH A 85 2785 41 HOH HOH . H 5 HOH A 86 2786 13 HOH HOH . H 5 HOH A 87 2787 125 HOH HOH . H 5 HOH A 88 2788 29 HOH HOH . H 5 HOH A 89 2789 82 HOH HOH . H 5 HOH A 90 2790 8 HOH HOH . H 5 HOH A 91 2791 24 HOH HOH . H 5 HOH A 92 2792 59 HOH HOH . H 5 HOH A 93 2793 9 HOH HOH . H 5 HOH A 94 2794 90 HOH HOH . H 5 HOH A 95 2795 208 HOH HOH . H 5 HOH A 96 2796 2 HOH HOH . H 5 HOH A 97 2797 204 HOH HOH . H 5 HOH A 98 2798 15 HOH HOH . H 5 HOH A 99 2799 34 HOH HOH . H 5 HOH A 100 2800 31 HOH HOH . H 5 HOH A 101 2801 56 HOH HOH . H 5 HOH A 102 2802 98 HOH HOH . H 5 HOH A 103 2803 115 HOH HOH . H 5 HOH A 104 2804 44 HOH HOH . H 5 HOH A 105 2805 174 HOH HOH . H 5 HOH A 106 2806 134 HOH HOH . H 5 HOH A 107 2807 55 HOH HOH . H 5 HOH A 108 2808 50 HOH HOH . H 5 HOH A 109 2809 229 HOH HOH . H 5 HOH A 110 2810 151 HOH HOH . H 5 HOH A 111 2811 88 HOH HOH . H 5 HOH A 112 2812 157 HOH HOH . H 5 HOH A 113 2813 46 HOH HOH . H 5 HOH A 114 2814 36 HOH HOH . H 5 HOH A 115 2815 215 HOH HOH . H 5 HOH A 116 2816 114 HOH HOH . H 5 HOH A 117 2817 97 HOH HOH . H 5 HOH A 118 2818 122 HOH HOH . H 5 HOH A 119 2819 143 HOH HOH . H 5 HOH A 120 2820 108 HOH HOH . H 5 HOH A 121 2821 92 HOH HOH . H 5 HOH A 122 2822 160 HOH HOH . H 5 HOH A 123 2823 100 HOH HOH . H 5 HOH A 124 2824 20 HOH HOH . H 5 HOH A 125 2825 141 HOH HOH . H 5 HOH A 126 2826 176 HOH HOH . H 5 HOH A 127 2827 202 HOH HOH . H 5 HOH A 128 2828 66 HOH HOH . H 5 HOH A 129 2829 10 HOH HOH . H 5 HOH A 130 2830 73 HOH HOH . H 5 HOH A 131 2831 45 HOH HOH . H 5 HOH A 132 2832 185 HOH HOH . H 5 HOH A 133 2833 94 HOH HOH . H 5 HOH A 134 2834 42 HOH HOH . H 5 HOH A 135 2835 14 HOH HOH . H 5 HOH A 136 2836 84 HOH HOH . H 5 HOH A 137 2837 172 HOH HOH . H 5 HOH A 138 2838 167 HOH HOH . H 5 HOH A 139 2839 101 HOH HOH . H 5 HOH A 140 2840 177 HOH HOH . H 5 HOH A 141 2841 213 HOH HOH . H 5 HOH A 142 2842 137 HOH HOH . H 5 HOH A 143 2843 154 HOH HOH . H 5 HOH A 144 2844 152 HOH HOH . H 5 HOH A 145 2845 80 HOH HOH . H 5 HOH A 146 2846 133 HOH HOH . H 5 HOH A 147 2847 140 HOH HOH . H 5 HOH A 148 2848 194 HOH HOH . H 5 HOH A 149 2849 89 HOH HOH . H 5 HOH A 150 2850 106 HOH HOH . H 5 HOH A 151 2851 200 HOH HOH . H 5 HOH A 152 2852 210 HOH HOH . H 5 HOH A 153 2853 38 HOH HOH . H 5 HOH A 154 2854 112 HOH HOH . H 5 HOH A 155 2855 120 HOH HOH . H 5 HOH A 156 2856 126 HOH HOH . H 5 HOH A 157 2857 139 HOH HOH . H 5 HOH A 158 2858 39 HOH HOH . H 5 HOH A 159 2859 163 HOH HOH . H 5 HOH A 160 2860 171 HOH HOH . H 5 HOH A 161 2861 117 HOH HOH . H 5 HOH A 162 2862 37 HOH HOH . H 5 HOH A 163 2863 85 HOH HOH . H 5 HOH A 164 2864 63 HOH HOH . H 5 HOH A 165 2865 156 HOH HOH . H 5 HOH A 166 2866 35 HOH HOH . H 5 HOH A 167 2867 201 HOH HOH . H 5 HOH A 168 2868 119 HOH HOH . H 5 HOH A 169 2869 64 HOH HOH . H 5 HOH A 170 2870 234 HOH HOH . H 5 HOH A 171 2871 221 HOH HOH . H 5 HOH A 172 2872 121 HOH HOH . H 5 HOH A 173 2873 203 HOH HOH . H 5 HOH A 174 2874 181 HOH HOH . H 5 HOH A 175 2875 87 HOH HOH . H 5 HOH A 176 2876 196 HOH HOH . H 5 HOH A 177 2877 81 HOH HOH . H 5 HOH A 178 2878 169 HOH HOH . H 5 HOH A 179 2879 178 HOH HOH . H 5 HOH A 180 2880 180 HOH HOH . H 5 HOH A 181 2881 158 HOH HOH . H 5 HOH A 182 2882 57 HOH HOH . H 5 HOH A 183 2883 236 HOH HOH . H 5 HOH A 184 2884 228 HOH HOH . H 5 HOH A 185 2885 124 HOH HOH . H 5 HOH A 186 2886 109 HOH HOH . H 5 HOH A 187 2887 217 HOH HOH . H 5 HOH A 188 2888 214 HOH HOH . H 5 HOH A 189 2889 162 HOH HOH . H 5 HOH A 190 2890 111 HOH HOH . H 5 HOH A 191 2891 220 HOH HOH . H 5 HOH A 192 2892 146 HOH HOH . H 5 HOH A 193 2893 166 HOH HOH . H 5 HOH A 194 2894 230 HOH HOH . H 5 HOH A 195 2895 78 HOH HOH . H 5 HOH A 196 2896 179 HOH HOH . H 5 HOH A 197 2897 235 HOH HOH . H 5 HOH A 198 2898 189 HOH HOH . H 5 HOH A 199 2899 233 HOH HOH . H 5 HOH A 200 2900 142 HOH HOH . H 5 HOH A 201 2901 224 HOH HOH . H 5 HOH A 202 2902 206 HOH HOH . H 5 HOH A 203 2903 212 HOH HOH . H 5 HOH A 204 2904 198 HOH HOH . H 5 HOH A 205 2905 192 HOH HOH . H 5 HOH A 206 2906 218 HOH HOH . H 5 HOH A 207 2907 153 HOH HOH . H 5 HOH A 208 2908 168 HOH HOH . H 5 HOH A 209 2909 105 HOH HOH . H 5 HOH A 210 2910 226 HOH HOH . H 5 HOH A 211 2911 182 HOH HOH . H 5 HOH A 212 2912 93 HOH HOH . H 5 HOH A 213 2913 132 HOH HOH . H 5 HOH A 214 2914 197 HOH HOH . H 5 HOH A 215 2915 95 HOH HOH . H 5 HOH A 216 2916 227 HOH HOH . H 5 HOH A 217 2917 211 HOH HOH . H 5 HOH A 218 2918 127 HOH HOH . H 5 HOH A 219 2919 103 HOH HOH . H 5 HOH A 220 2920 232 HOH HOH . H 5 HOH A 221 2921 195 HOH HOH . H 5 HOH A 222 2922 231 HOH HOH . H 5 HOH A 223 2923 165 HOH HOH . H 5 HOH A 224 2924 188 HOH HOH . H 5 HOH A 225 2925 184 HOH HOH . H 5 HOH A 226 2926 135 HOH HOH . H 5 HOH A 227 2927 225 HOH HOH . H 5 HOH A 228 2928 190 HOH HOH . H 5 HOH A 229 2929 187 HOH HOH . H 5 HOH A 230 2930 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PG5 . . . C 3 -12.061 7.17 2.196 0.89 59.25 ? C1 PG5 2602 A 1 HETATM 2 O O1 PG5 . . . C 3 -12.84 6.042 1.91 0.89 70.49 ? O1 PG5 2602 A 1 HETATM 3 C C2 PG5 . . . C 3 -13.085 5.851 0.546 0.89 49.64 ? C2 PG5 2602 A 1 HETATM 4 C C3 PG5 . . . C 3 -14.301 4.945 0.365 0.89 43.67 ? C3 PG5 2602 A 1 HETATM 5 O O2 PG5 . . . C 3 -13.943 3.84 -0.416 0.89 48.94 ? O2 PG5 2602 A 1 HETATM 6 C C4 PG5 . . . C 3 -13.027 2.991 0.208 0.89 45.76 ? C4 PG5 2602 A 1 HETATM 7 C C5 PG5 . . . C 3 -12.363 2.09 -0.826 0.89 40.42 ? C5 PG5 2602 A 1 HETATM 8 O O3 PG5 . . . C 3 -11.183 1.578 -0.276 0.89 46.93 ? O3 PG5 2602 A 1 HETATM 9 C C6 PG5 . . . C 3 -10.18 2.536 -0.09 0.89 41.31 ? C6 PG5 2602 A 1 HETATM 10 C C7 PG5 . . . C 3 -9.338 2.188 1.138 0.89 36.83 ? C7 PG5 2602 A 1 HETATM 11 O O4 PG5 . . . C 3 -8.167 2.953 1.115 0.89 41.29 ? O4 PG5 2602 A 1 HETATM 12 C C8 PG5 . . . C 3 -7.836 3.521 2.351 0.89 39.39 ? C8 PG5 2602 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #