data_7QML
#
_model_server_result.job_id            kzrU4S4OEoxjLRYpLUpt2g 
_model_server_result.datetime_utc      '2024-11-07 15:46:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qml 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2604}' 
#
_entry.id    7QML 
#
_exptl.entry_id    7QML 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.629 
_cell.angle_gamma         90 
_cell.entry_id            7QML 
_cell.length_a            45.807 
_cell.length_b            73.978 
_cell.length_c            53.478 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QML 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             344 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              255 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             379 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              290 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.036 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     7QML 
_atom_sites.fract_transf_matrix[1][1]    0.021831 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.007786 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013518 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019853 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 U1H A 1 2601 2601 U1H LIG . 
C 3 PG5 A 1 2602 2801 PG5 PG5 . 
D 4 DMS A 1 2603 2901 DMS DMS . 
E 4 DMS A 1 2604 3001 DMS DMS . 
F 4 DMS A 1 2605 3101 DMS DMS . 
G 2 U1H A 1 2606 3401 U1H LIG . 
H 5 HOH A 1 2701 211 HOH HOH . 
H 5 HOH A 2 2702 97 HOH HOH . 
H 5 HOH A 3 2703 183 HOH HOH . 
H 5 HOH A 4 2704 196 HOH HOH . 
H 5 HOH A 5 2705 69 HOH HOH . 
H 5 HOH A 6 2706 52 HOH HOH . 
H 5 HOH A 7 2707 72 HOH HOH . 
H 5 HOH A 8 2708 152 HOH HOH . 
H 5 HOH A 9 2709 86 HOH HOH . 
H 5 HOH A 10 2710 201 HOH HOH . 
H 5 HOH A 11 2711 182 HOH HOH . 
H 5 HOH A 12 2712 77 HOH HOH . 
H 5 HOH A 13 2713 84 HOH HOH . 
H 5 HOH A 14 2714 51 HOH HOH . 
H 5 HOH A 15 2715 81 HOH HOH . 
H 5 HOH A 16 2716 110 HOH HOH . 
H 5 HOH A 17 2717 212 HOH HOH . 
H 5 HOH A 18 2718 25 HOH HOH . 
H 5 HOH A 19 2719 235 HOH HOH . 
H 5 HOH A 20 2720 136 HOH HOH . 
H 5 HOH A 21 2721 155 HOH HOH . 
H 5 HOH A 22 2722 189 HOH HOH . 
H 5 HOH A 23 2723 76 HOH HOH . 
H 5 HOH A 24 2724 156 HOH HOH . 
H 5 HOH A 25 2725 22 HOH HOH . 
H 5 HOH A 26 2726 167 HOH HOH . 
H 5 HOH A 27 2727 20 HOH HOH . 
H 5 HOH A 28 2728 120 HOH HOH . 
H 5 HOH A 29 2729 60 HOH HOH . 
H 5 HOH A 30 2730 87 HOH HOH . 
H 5 HOH A 31 2731 27 HOH HOH . 
H 5 HOH A 32 2732 47 HOH HOH . 
H 5 HOH A 33 2733 24 HOH HOH . 
H 5 HOH A 34 2734 180 HOH HOH . 
H 5 HOH A 35 2735 46 HOH HOH . 
H 5 HOH A 36 2736 32 HOH HOH . 
H 5 HOH A 37 2737 26 HOH HOH . 
H 5 HOH A 38 2738 70 HOH HOH . 
H 5 HOH A 39 2739 179 HOH HOH . 
H 5 HOH A 40 2740 65 HOH HOH . 
H 5 HOH A 41 2741 79 HOH HOH . 
H 5 HOH A 42 2742 174 HOH HOH . 
H 5 HOH A 43 2743 41 HOH HOH . 
H 5 HOH A 44 2744 100 HOH HOH . 
H 5 HOH A 45 2745 193 HOH HOH . 
H 5 HOH A 46 2746 185 HOH HOH . 
H 5 HOH A 47 2747 135 HOH HOH . 
H 5 HOH A 48 2748 7 HOH HOH . 
H 5 HOH A 49 2749 30 HOH HOH . 
H 5 HOH A 50 2750 161 HOH HOH . 
H 5 HOH A 51 2751 5 HOH HOH . 
H 5 HOH A 52 2752 38 HOH HOH . 
H 5 HOH A 53 2753 28 HOH HOH . 
H 5 HOH A 54 2754 103 HOH HOH . 
H 5 HOH A 55 2755 15 HOH HOH . 
H 5 HOH A 56 2756 172 HOH HOH . 
H 5 HOH A 57 2757 248 HOH HOH . 
H 5 HOH A 58 2758 62 HOH HOH . 
H 5 HOH A 59 2759 128 HOH HOH . 
H 5 HOH A 60 2760 45 HOH HOH . 
H 5 HOH A 61 2761 21 HOH HOH . 
H 5 HOH A 62 2762 11 HOH HOH . 
H 5 HOH A 63 2763 90 HOH HOH . 
H 5 HOH A 64 2764 59 HOH HOH . 
H 5 HOH A 65 2765 123 HOH HOH . 
H 5 HOH A 66 2766 132 HOH HOH . 
H 5 HOH A 67 2767 190 HOH HOH . 
H 5 HOH A 68 2768 116 HOH HOH . 
H 5 HOH A 69 2769 137 HOH HOH . 
H 5 HOH A 70 2770 124 HOH HOH . 
H 5 HOH A 71 2771 75 HOH HOH . 
H 5 HOH A 72 2772 50 HOH HOH . 
H 5 HOH A 73 2773 118 HOH HOH . 
H 5 HOH A 74 2774 127 HOH HOH . 
H 5 HOH A 75 2775 249 HOH HOH . 
H 5 HOH A 76 2776 53 HOH HOH . 
H 5 HOH A 77 2777 71 HOH HOH . 
H 5 HOH A 78 2778 33 HOH HOH . 
H 5 HOH A 79 2779 221 HOH HOH . 
H 5 HOH A 80 2780 121 HOH HOH . 
H 5 HOH A 81 2781 178 HOH HOH . 
H 5 HOH A 82 2782 247 HOH HOH . 
H 5 HOH A 83 2783 1 HOH HOH . 
H 5 HOH A 84 2784 115 HOH HOH . 
H 5 HOH A 85 2785 29 HOH HOH . 
H 5 HOH A 86 2786 3 HOH HOH . 
H 5 HOH A 87 2787 173 HOH HOH . 
H 5 HOH A 88 2788 92 HOH HOH . 
H 5 HOH A 89 2789 133 HOH HOH . 
H 5 HOH A 90 2790 31 HOH HOH . 
H 5 HOH A 91 2791 9 HOH HOH . 
H 5 HOH A 92 2792 16 HOH HOH . 
H 5 HOH A 93 2793 177 HOH HOH . 
H 5 HOH A 94 2794 2 HOH HOH . 
H 5 HOH A 95 2795 17 HOH HOH . 
H 5 HOH A 96 2796 48 HOH HOH . 
H 5 HOH A 97 2797 4 HOH HOH . 
H 5 HOH A 98 2798 99 HOH HOH . 
H 5 HOH A 99 2799 165 HOH HOH . 
H 5 HOH A 100 2800 199 HOH HOH . 
H 5 HOH A 101 2801 105 HOH HOH . 
H 5 HOH A 102 2802 145 HOH HOH . 
H 5 HOH A 103 2803 57 HOH HOH . 
H 5 HOH A 104 2804 93 HOH HOH . 
H 5 HOH A 105 2805 8 HOH HOH . 
H 5 HOH A 106 2806 39 HOH HOH . 
H 5 HOH A 107 2807 6 HOH HOH . 
H 5 HOH A 108 2808 139 HOH HOH . 
H 5 HOH A 109 2809 68 HOH HOH . 
H 5 HOH A 110 2810 101 HOH HOH . 
H 5 HOH A 111 2811 14 HOH HOH . 
H 5 HOH A 112 2812 42 HOH HOH . 
H 5 HOH A 113 2813 83 HOH HOH . 
H 5 HOH A 114 2814 166 HOH HOH . 
H 5 HOH A 115 2815 12 HOH HOH . 
H 5 HOH A 116 2816 23 HOH HOH . 
H 5 HOH A 117 2817 55 HOH HOH . 
H 5 HOH A 118 2818 151 HOH HOH . 
H 5 HOH A 119 2819 129 HOH HOH . 
H 5 HOH A 120 2820 138 HOH HOH . 
H 5 HOH A 121 2821 18 HOH HOH . 
H 5 HOH A 122 2822 44 HOH HOH . 
H 5 HOH A 123 2823 66 HOH HOH . 
H 5 HOH A 124 2824 49 HOH HOH . 
H 5 HOH A 125 2825 58 HOH HOH . 
H 5 HOH A 126 2826 111 HOH HOH . 
H 5 HOH A 127 2827 219 HOH HOH . 
H 5 HOH A 128 2828 43 HOH HOH . 
H 5 HOH A 129 2829 102 HOH HOH . 
H 5 HOH A 130 2830 160 HOH HOH . 
H 5 HOH A 131 2831 162 HOH HOH . 
H 5 HOH A 132 2832 198 HOH HOH . 
H 5 HOH A 133 2833 10 HOH HOH . 
H 5 HOH A 134 2834 106 HOH HOH . 
H 5 HOH A 135 2835 19 HOH HOH . 
H 5 HOH A 136 2836 159 HOH HOH . 
H 5 HOH A 137 2837 54 HOH HOH . 
H 5 HOH A 138 2838 95 HOH HOH . 
H 5 HOH A 139 2839 130 HOH HOH . 
H 5 HOH A 140 2840 134 HOH HOH . 
H 5 HOH A 141 2841 35 HOH HOH . 
H 5 HOH A 142 2842 175 HOH HOH . 
H 5 HOH A 143 2843 197 HOH HOH . 
H 5 HOH A 144 2844 184 HOH HOH . 
H 5 HOH A 145 2845 113 HOH HOH . 
H 5 HOH A 146 2846 188 HOH HOH . 
H 5 HOH A 147 2847 206 HOH HOH . 
H 5 HOH A 148 2848 158 HOH HOH . 
H 5 HOH A 149 2849 98 HOH HOH . 
H 5 HOH A 150 2850 13 HOH HOH . 
H 5 HOH A 151 2851 40 HOH HOH . 
H 5 HOH A 152 2852 144 HOH HOH . 
H 5 HOH A 153 2853 119 HOH HOH . 
H 5 HOH A 154 2854 170 HOH HOH . 
H 5 HOH A 155 2855 147 HOH HOH . 
H 5 HOH A 156 2856 181 HOH HOH . 
H 5 HOH A 157 2857 64 HOH HOH . 
H 5 HOH A 158 2858 63 HOH HOH . 
H 5 HOH A 159 2859 141 HOH HOH . 
H 5 HOH A 160 2860 91 HOH HOH . 
H 5 HOH A 161 2861 164 HOH HOH . 
H 5 HOH A 162 2862 37 HOH HOH . 
H 5 HOH A 163 2863 220 HOH HOH . 
H 5 HOH A 164 2864 191 HOH HOH . 
H 5 HOH A 165 2865 117 HOH HOH . 
H 5 HOH A 166 2866 36 HOH HOH . 
H 5 HOH A 167 2867 126 HOH HOH . 
H 5 HOH A 168 2868 108 HOH HOH . 
H 5 HOH A 169 2869 234 HOH HOH . 
H 5 HOH A 170 2870 109 HOH HOH . 
H 5 HOH A 171 2871 231 HOH HOH . 
H 5 HOH A 172 2872 222 HOH HOH . 
H 5 HOH A 173 2873 34 HOH HOH . 
H 5 HOH A 174 2874 242 HOH HOH . 
H 5 HOH A 175 2875 85 HOH HOH . 
H 5 HOH A 176 2876 154 HOH HOH . 
H 5 HOH A 177 2877 125 HOH HOH . 
H 5 HOH A 178 2878 209 HOH HOH . 
H 5 HOH A 179 2879 238 HOH HOH . 
H 5 HOH A 180 2880 210 HOH HOH . 
H 5 HOH A 181 2881 200 HOH HOH . 
H 5 HOH A 182 2882 241 HOH HOH . 
H 5 HOH A 183 2883 89 HOH HOH . 
H 5 HOH A 184 2884 217 HOH HOH . 
H 5 HOH A 185 2885 237 HOH HOH . 
H 5 HOH A 186 2886 82 HOH HOH . 
H 5 HOH A 187 2887 229 HOH HOH . 
H 5 HOH A 188 2888 228 HOH HOH . 
H 5 HOH A 189 2889 56 HOH HOH . 
H 5 HOH A 190 2890 227 HOH HOH . 
H 5 HOH A 191 2891 88 HOH HOH . 
H 5 HOH A 192 2892 143 HOH HOH . 
H 5 HOH A 193 2893 224 HOH HOH . 
H 5 HOH A 194 2894 112 HOH HOH . 
H 5 HOH A 195 2895 61 HOH HOH . 
H 5 HOH A 196 2896 195 HOH HOH . 
H 5 HOH A 197 2897 157 HOH HOH . 
H 5 HOH A 198 2898 225 HOH HOH . 
H 5 HOH A 199 2899 168 HOH HOH . 
H 5 HOH A 200 2900 218 HOH HOH . 
H 5 HOH A 201 2901 232 HOH HOH . 
H 5 HOH A 202 2902 214 HOH HOH . 
H 5 HOH A 203 2903 194 HOH HOH . 
H 5 HOH A 204 2904 202 HOH HOH . 
H 5 HOH A 205 2905 215 HOH HOH . 
H 5 HOH A 206 2906 78 HOH HOH . 
H 5 HOH A 207 2907 80 HOH HOH . 
H 5 HOH A 208 2908 230 HOH HOH . 
H 5 HOH A 209 2909 251 HOH HOH . 
H 5 HOH A 210 2910 171 HOH HOH . 
H 5 HOH A 211 2911 246 HOH HOH . 
H 5 HOH A 212 2912 245 HOH HOH . 
H 5 HOH A 213 2913 226 HOH HOH . 
H 5 HOH A 214 2914 250 HOH HOH . 
H 5 HOH A 215 2915 148 HOH HOH . 
H 5 HOH A 216 2916 243 HOH HOH . 
H 5 HOH A 217 2917 208 HOH HOH . 
H 5 HOH A 218 2918 186 HOH HOH . 
H 5 HOH A 219 2919 107 HOH HOH . 
H 5 HOH A 220 2920 150 HOH HOH . 
H 5 HOH A 221 2921 114 HOH HOH . 
H 5 HOH A 222 2922 204 HOH HOH . 
H 5 HOH A 223 2923 146 HOH HOH . 
H 5 HOH A 224 2924 74 HOH HOH . 
H 5 HOH A 225 2925 94 HOH HOH . 
H 5 HOH A 226 2926 240 HOH HOH . 
H 5 HOH A 227 2927 207 HOH HOH . 
H 5 HOH A 228 2928 96 HOH HOH . 
H 5 HOH A 229 2929 163 HOH HOH . 
H 5 HOH A 230 2930 73 HOH HOH . 
H 5 HOH A 231 2931 192 HOH HOH . 
H 5 HOH A 232 2932 149 HOH HOH . 
H 5 HOH A 233 2933 122 HOH HOH . 
H 5 HOH A 234 2934 131 HOH HOH . 
H 5 HOH A 235 2935 153 HOH HOH . 
H 5 HOH A 236 2936 236 HOH HOH . 
H 5 HOH A 237 2937 213 HOH HOH . 
H 5 HOH A 238 2938 216 HOH HOH . 
H 5 HOH A 239 2939 239 HOH HOH . 
H 5 HOH A 240 2940 104 HOH HOH . 
H 5 HOH A 241 2941 223 HOH HOH . 
H 5 HOH A 242 2942 244 HOH HOH . 
H 5 HOH A 243 2943 203 HOH HOH . 
H 5 HOH A 244 2944 187 HOH HOH . 
H 5 HOH A 245 2945 140 HOH HOH . 
H 5 HOH A 246 2946 205 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . E 4 -3.693 9.064 6.923 0.75 61.74 ? S DMS 2604 A 1 
HETATM 2 O O DMS . . . E 4 -3.47 7.667 6.549 0.75 55.7 ? O DMS 2604 A 1 
HETATM 3 C C1 DMS . . . E 4 -2.062 9.853 6.887 0.75 48.71 ? C1 DMS 2604 A 1 
HETATM 4 C C2 DMS . . . E 4 -4.41 9.873 5.466 0.75 40.42 ? C2 DMS 2604 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#