data_7QMQ # _model_server_result.job_id 4mJCOvmyW51HApSACqxyLQ _model_server_result.datetime_utc '2024-11-07 16:00:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2606}' # _entry.id 7QMQ # _exptl.entry_id 7QMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.151 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(trifluoromethyl)phenyl]methanamine' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.607 _cell.angle_gamma 90 _cell.entry_id 7QMQ _cell.length_a 45.768 _cell.length_b 73.949 _cell.length_c 53.402 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H8 F3 N' _chem_comp.formula_weight 175.151 _chem_comp.id U1H _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(trifluoromethyl)phenyl]methanamine' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(Trifluoromethyl)benzylamine;p-trifluoromethylbenzylamine;4-Aminomethylbenzotrifluoride # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F10 C07 U1H sing 396 n n N01 C02 U1H sing 397 n n C11 C12 U1H doub 398 n y C11 C06 U1H sing 399 n y C12 C03 U1H sing 400 n y C07 F09 U1H sing 401 n n C07 C06 U1H sing 402 n n C07 F08 U1H sing 403 n n C06 C05 U1H doub 404 n y C03 C02 U1H sing 405 n n C03 C04 U1H doub 406 n y C05 C04 U1H sing 407 n y C02 H1 U1H sing 408 n n C02 H2 U1H sing 409 n n C04 H3 U1H sing 410 n n C05 H4 U1H sing 411 n n C11 H5 U1H sing 412 n n C12 H6 U1H sing 413 n n N01 H7 U1H sing 414 n n N01 H8 U1H sing 415 n n # _atom_sites.entry_id 7QMQ _atom_sites.fract_transf_matrix[1][1] 0.021849 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007783 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013523 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019879 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U1H A 1 2601 2601 U1H LIG . C 3 PG5 A 1 2602 2801 PG5 PG5 . D 4 DMS A 1 2603 2901 DMS DMS . E 4 DMS A 1 2604 3001 DMS DMS . F 4 DMS A 1 2605 3101 DMS DMS . G 2 U1H A 1 2606 3401 U1H LIG . H 5 HOH A 1 2701 78 HOH HOH . H 5 HOH A 2 2702 75 HOH HOH . H 5 HOH A 3 2703 103 HOH HOH . H 5 HOH A 4 2704 115 HOH HOH . H 5 HOH A 5 2705 53 HOH HOH . H 5 HOH A 6 2706 117 HOH HOH . H 5 HOH A 7 2707 52 HOH HOH . H 5 HOH A 8 2708 119 HOH HOH . H 5 HOH A 9 2709 28 HOH HOH . H 5 HOH A 10 2710 23 HOH HOH . H 5 HOH A 11 2711 21 HOH HOH . H 5 HOH A 12 2712 83 HOH HOH . H 5 HOH A 13 2713 17 HOH HOH . H 5 HOH A 14 2714 94 HOH HOH . H 5 HOH A 15 2715 72 HOH HOH . H 5 HOH A 16 2716 31 HOH HOH . H 5 HOH A 17 2717 29 HOH HOH . H 5 HOH A 18 2718 25 HOH HOH . H 5 HOH A 19 2719 65 HOH HOH . H 5 HOH A 20 2720 26 HOH HOH . H 5 HOH A 21 2721 54 HOH HOH . H 5 HOH A 22 2722 32 HOH HOH . H 5 HOH A 23 2723 118 HOH HOH . H 5 HOH A 24 2724 11 HOH HOH . H 5 HOH A 25 2725 18 HOH HOH . H 5 HOH A 26 2726 114 HOH HOH . H 5 HOH A 27 2727 12 HOH HOH . H 5 HOH A 28 2728 62 HOH HOH . H 5 HOH A 29 2729 43 HOH HOH . H 5 HOH A 30 2730 33 HOH HOH . H 5 HOH A 31 2731 30 HOH HOH . H 5 HOH A 32 2732 123 HOH HOH . H 5 HOH A 33 2733 69 HOH HOH . H 5 HOH A 34 2734 68 HOH HOH . H 5 HOH A 35 2735 59 HOH HOH . H 5 HOH A 36 2736 2 HOH HOH . H 5 HOH A 37 2737 40 HOH HOH . H 5 HOH A 38 2738 7 HOH HOH . H 5 HOH A 39 2739 22 HOH HOH . H 5 HOH A 40 2740 101 HOH HOH . H 5 HOH A 41 2741 6 HOH HOH . H 5 HOH A 42 2742 47 HOH HOH . H 5 HOH A 43 2743 16 HOH HOH . H 5 HOH A 44 2744 48 HOH HOH . H 5 HOH A 45 2745 108 HOH HOH . H 5 HOH A 46 2746 99 HOH HOH . H 5 HOH A 47 2747 5 HOH HOH . H 5 HOH A 48 2748 104 HOH HOH . H 5 HOH A 49 2749 15 HOH HOH . H 5 HOH A 50 2750 8 HOH HOH . H 5 HOH A 51 2751 148 HOH HOH . H 5 HOH A 52 2752 102 HOH HOH . H 5 HOH A 53 2753 1 HOH HOH . H 5 HOH A 54 2754 71 HOH HOH . H 5 HOH A 55 2755 129 HOH HOH . H 5 HOH A 56 2756 82 HOH HOH . H 5 HOH A 57 2757 79 HOH HOH . H 5 HOH A 58 2758 88 HOH HOH . H 5 HOH A 59 2759 3 HOH HOH . H 5 HOH A 60 2760 76 HOH HOH . H 5 HOH A 61 2761 74 HOH HOH . H 5 HOH A 62 2762 56 HOH HOH . H 5 HOH A 63 2763 27 HOH HOH . H 5 HOH A 64 2764 51 HOH HOH . H 5 HOH A 65 2765 13 HOH HOH . H 5 HOH A 66 2766 157 HOH HOH . H 5 HOH A 67 2767 60 HOH HOH . H 5 HOH A 68 2768 50 HOH HOH . H 5 HOH A 69 2769 19 HOH HOH . H 5 HOH A 70 2770 49 HOH HOH . H 5 HOH A 71 2771 134 HOH HOH . H 5 HOH A 72 2772 109 HOH HOH . H 5 HOH A 73 2773 122 HOH HOH . H 5 HOH A 74 2774 4 HOH HOH . H 5 HOH A 75 2775 34 HOH HOH . H 5 HOH A 76 2776 38 HOH HOH . H 5 HOH A 77 2777 58 HOH HOH . H 5 HOH A 78 2778 44 HOH HOH . H 5 HOH A 79 2779 110 HOH HOH . H 5 HOH A 80 2780 55 HOH HOH . H 5 HOH A 81 2781 63 HOH HOH . H 5 HOH A 82 2782 141 HOH HOH . H 5 HOH A 83 2783 41 HOH HOH . H 5 HOH A 84 2784 91 HOH HOH . H 5 HOH A 85 2785 45 HOH HOH . H 5 HOH A 86 2786 139 HOH HOH . H 5 HOH A 87 2787 73 HOH HOH . H 5 HOH A 88 2788 70 HOH HOH . H 5 HOH A 89 2789 96 HOH HOH . H 5 HOH A 90 2790 90 HOH HOH . H 5 HOH A 91 2791 9 HOH HOH . H 5 HOH A 92 2792 85 HOH HOH . H 5 HOH A 93 2793 81 HOH HOH . H 5 HOH A 94 2794 159 HOH HOH . H 5 HOH A 95 2795 98 HOH HOH . H 5 HOH A 96 2796 14 HOH HOH . H 5 HOH A 97 2797 10 HOH HOH . H 5 HOH A 98 2798 24 HOH HOH . H 5 HOH A 99 2799 20 HOH HOH . H 5 HOH A 100 2800 46 HOH HOH . H 5 HOH A 101 2801 105 HOH HOH . H 5 HOH A 102 2802 113 HOH HOH . H 5 HOH A 103 2803 66 HOH HOH . H 5 HOH A 104 2804 132 HOH HOH . H 5 HOH A 105 2805 86 HOH HOH . H 5 HOH A 106 2806 42 HOH HOH . H 5 HOH A 107 2807 89 HOH HOH . H 5 HOH A 108 2808 35 HOH HOH . H 5 HOH A 109 2809 36 HOH HOH . H 5 HOH A 110 2810 95 HOH HOH . H 5 HOH A 111 2811 124 HOH HOH . H 5 HOH A 112 2812 107 HOH HOH . H 5 HOH A 113 2813 57 HOH HOH . H 5 HOH A 114 2814 131 HOH HOH . H 5 HOH A 115 2815 97 HOH HOH . H 5 HOH A 116 2816 39 HOH HOH . H 5 HOH A 117 2817 100 HOH HOH . H 5 HOH A 118 2818 84 HOH HOH . H 5 HOH A 119 2819 142 HOH HOH . H 5 HOH A 120 2820 126 HOH HOH . H 5 HOH A 121 2821 106 HOH HOH . H 5 HOH A 122 2822 93 HOH HOH . H 5 HOH A 123 2823 135 HOH HOH . H 5 HOH A 124 2824 153 HOH HOH . H 5 HOH A 125 2825 64 HOH HOH . H 5 HOH A 126 2826 150 HOH HOH . H 5 HOH A 127 2827 145 HOH HOH . H 5 HOH A 128 2828 61 HOH HOH . H 5 HOH A 129 2829 37 HOH HOH . H 5 HOH A 130 2830 127 HOH HOH . H 5 HOH A 131 2831 156 HOH HOH . H 5 HOH A 132 2832 152 HOH HOH . H 5 HOH A 133 2833 80 HOH HOH . H 5 HOH A 134 2834 92 HOH HOH . H 5 HOH A 135 2835 161 HOH HOH . H 5 HOH A 136 2836 162 HOH HOH . H 5 HOH A 137 2837 137 HOH HOH . H 5 HOH A 138 2838 116 HOH HOH . H 5 HOH A 139 2839 154 HOH HOH . H 5 HOH A 140 2840 160 HOH HOH . H 5 HOH A 141 2841 155 HOH HOH . H 5 HOH A 142 2842 111 HOH HOH . H 5 HOH A 143 2843 87 HOH HOH . H 5 HOH A 144 2844 144 HOH HOH . H 5 HOH A 145 2845 130 HOH HOH . H 5 HOH A 146 2846 143 HOH HOH . H 5 HOH A 147 2847 77 HOH HOH . H 5 HOH A 148 2848 147 HOH HOH . H 5 HOH A 149 2849 128 HOH HOH . H 5 HOH A 150 2850 133 HOH HOH . H 5 HOH A 151 2851 151 HOH HOH . H 5 HOH A 152 2852 112 HOH HOH . H 5 HOH A 153 2853 138 HOH HOH . H 5 HOH A 154 2854 67 HOH HOH . H 5 HOH A 155 2855 120 HOH HOH . H 5 HOH A 156 2856 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 U1H . . . G 2 -0.586 3.109 10.61 0.67 44.59 ? C02 U1H 2606 A 1 HETATM 2 C C03 U1H . . . G 2 -1.939 2.406 10.575 0.67 47.21 ? C03 U1H 2606 A 1 HETATM 3 C C04 U1H . . . G 2 -2.06 1.17 9.961 0.67 46.04 ? C04 U1H 2606 A 1 HETATM 4 C C05 U1H . . . G 2 -3.291 0.537 9.925 0.67 48.48 ? C05 U1H 2606 A 1 HETATM 5 C C06 U1H . . . G 2 -4.396 1.142 10.501 0.67 50.51 ? C06 U1H 2606 A 1 HETATM 6 C C07 U1H . . . G 2 -5.753 0.445 10.459 0.67 55.48 ? C07 U1H 2606 A 1 HETATM 7 C C11 U1H . . . G 2 -4.275 2.381 11.109 0.67 52.18 ? C11 U1H 2606 A 1 HETATM 8 C C12 U1H . . . G 2 -3.044 3.014 11.146 0.67 50.3 ? C12 U1H 2606 A 1 HETATM 9 F F08 U1H . . . G 2 -5.964 -0.053 9.206 0.67 57.35 ? F08 U1H 2606 A 1 HETATM 10 F F09 U1H . . . G 2 -6.731 1.346 10.768 0.67 54.9 ? F09 U1H 2606 A 1 HETATM 11 F F10 U1H . . . G 2 -5.776 -0.579 11.362 0.67 54.37 ? F10 U1H 2606 A 1 HETATM 12 N N01 U1H . . . G 2 -0.537 4.065 9.522 0.67 42.86 ? N01 U1H 2606 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #