data_7QMR # _model_server_result.job_id 1LzR4bgoXYUKnrI5PpvrEQ _model_server_result.datetime_utc '2024-11-07 15:37:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qmr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":2605}' # _entry.id 7QMR # _exptl.entry_id 7QMR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.991 _cell.angle_gamma 90 _cell.entry_id 7QMR _cell.length_a 45.848 _cell.length_b 74.166 _cell.length_c 53.645 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QMR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 H N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.042 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7QMR _atom_sites.fract_transf_matrix[1][1] 0.021811 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007935 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019836 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U1H A 1 2601 2601 U1H LIG . C 3 PG5 A 1 2602 2801 PG5 PG5 . D 4 DMS A 1 2603 2901 DMS DMS . E 4 DMS A 1 2604 3001 DMS DMS . F 4 DMS A 1 2605 3101 DMS DMS . G 2 U1H A 1 2606 3401 U1H LIG . H 4 DMS A 1 2607 3501 DMS DMS . I 5 HOH A 1 2701 209 HOH HOH . I 5 HOH A 2 2702 74 HOH HOH . I 5 HOH A 3 2703 81 HOH HOH . I 5 HOH A 4 2704 109 HOH HOH . I 5 HOH A 5 2705 85 HOH HOH . I 5 HOH A 6 2706 164 HOH HOH . I 5 HOH A 7 2707 53 HOH HOH . I 5 HOH A 8 2708 77 HOH HOH . I 5 HOH A 9 2709 208 HOH HOH . I 5 HOH A 10 2710 40 HOH HOH . I 5 HOH A 11 2711 116 HOH HOH . I 5 HOH A 12 2712 169 HOH HOH . I 5 HOH A 13 2713 95 HOH HOH . I 5 HOH A 14 2714 23 HOH HOH . I 5 HOH A 15 2715 191 HOH HOH . I 5 HOH A 16 2716 140 HOH HOH . I 5 HOH A 17 2717 70 HOH HOH . I 5 HOH A 18 2718 28 HOH HOH . I 5 HOH A 19 2719 211 HOH HOH . I 5 HOH A 20 2720 97 HOH HOH . I 5 HOH A 21 2721 219 HOH HOH . I 5 HOH A 22 2722 66 HOH HOH . I 5 HOH A 23 2723 117 HOH HOH . I 5 HOH A 24 2724 212 HOH HOH . I 5 HOH A 25 2725 54 HOH HOH . I 5 HOH A 26 2726 5 HOH HOH . I 5 HOH A 27 2727 84 HOH HOH . I 5 HOH A 28 2728 21 HOH HOH . I 5 HOH A 29 2729 26 HOH HOH . I 5 HOH A 30 2730 48 HOH HOH . I 5 HOH A 31 2731 187 HOH HOH . I 5 HOH A 32 2732 61 HOH HOH . I 5 HOH A 33 2733 33 HOH HOH . I 5 HOH A 34 2734 76 HOH HOH . I 5 HOH A 35 2735 88 HOH HOH . I 5 HOH A 36 2736 25 HOH HOH . I 5 HOH A 37 2737 118 HOH HOH . I 5 HOH A 38 2738 63 HOH HOH . I 5 HOH A 39 2739 99 HOH HOH . I 5 HOH A 40 2740 150 HOH HOH . I 5 HOH A 41 2741 56 HOH HOH . I 5 HOH A 42 2742 110 HOH HOH . I 5 HOH A 43 2743 154 HOH HOH . I 5 HOH A 44 2744 52 HOH HOH . I 5 HOH A 45 2745 43 HOH HOH . I 5 HOH A 46 2746 122 HOH HOH . I 5 HOH A 47 2747 3 HOH HOH . I 5 HOH A 48 2748 115 HOH HOH . I 5 HOH A 49 2749 31 HOH HOH . I 5 HOH A 50 2750 2 HOH HOH . I 5 HOH A 51 2751 49 HOH HOH . I 5 HOH A 52 2752 104 HOH HOH . I 5 HOH A 53 2753 141 HOH HOH . I 5 HOH A 54 2754 171 HOH HOH . I 5 HOH A 55 2755 111 HOH HOH . I 5 HOH A 56 2756 166 HOH HOH . I 5 HOH A 57 2757 102 HOH HOH . I 5 HOH A 58 2758 22 HOH HOH . I 5 HOH A 59 2759 153 HOH HOH . I 5 HOH A 60 2760 44 HOH HOH . I 5 HOH A 61 2761 112 HOH HOH . I 5 HOH A 62 2762 30 HOH HOH . I 5 HOH A 63 2763 220 HOH HOH . I 5 HOH A 64 2764 183 HOH HOH . I 5 HOH A 65 2765 178 HOH HOH . I 5 HOH A 66 2766 50 HOH HOH . I 5 HOH A 67 2767 163 HOH HOH . I 5 HOH A 68 2768 57 HOH HOH . I 5 HOH A 69 2769 27 HOH HOH . I 5 HOH A 70 2770 32 HOH HOH . I 5 HOH A 71 2771 18 HOH HOH . I 5 HOH A 72 2772 94 HOH HOH . I 5 HOH A 73 2773 165 HOH HOH . I 5 HOH A 74 2774 19 HOH HOH . I 5 HOH A 75 2775 83 HOH HOH . I 5 HOH A 76 2776 64 HOH HOH . I 5 HOH A 77 2777 7 HOH HOH . I 5 HOH A 78 2778 130 HOH HOH . I 5 HOH A 79 2779 137 HOH HOH . I 5 HOH A 80 2780 12 HOH HOH . I 5 HOH A 81 2781 15 HOH HOH . I 5 HOH A 82 2782 105 HOH HOH . I 5 HOH A 83 2783 159 HOH HOH . I 5 HOH A 84 2784 17 HOH HOH . I 5 HOH A 85 2785 29 HOH HOH . I 5 HOH A 86 2786 135 HOH HOH . I 5 HOH A 87 2787 190 HOH HOH . I 5 HOH A 88 2788 16 HOH HOH . I 5 HOH A 89 2789 62 HOH HOH . I 5 HOH A 90 2790 91 HOH HOH . I 5 HOH A 91 2791 129 HOH HOH . I 5 HOH A 92 2792 134 HOH HOH . I 5 HOH A 93 2793 78 HOH HOH . I 5 HOH A 94 2794 227 HOH HOH . I 5 HOH A 95 2795 168 HOH HOH . I 5 HOH A 96 2796 8 HOH HOH . I 5 HOH A 97 2797 59 HOH HOH . I 5 HOH A 98 2798 47 HOH HOH . I 5 HOH A 99 2799 1 HOH HOH . I 5 HOH A 100 2800 41 HOH HOH . I 5 HOH A 101 2801 136 HOH HOH . I 5 HOH A 102 2802 145 HOH HOH . I 5 HOH A 103 2803 160 HOH HOH . I 5 HOH A 104 2804 155 HOH HOH . I 5 HOH A 105 2805 51 HOH HOH . I 5 HOH A 106 2806 103 HOH HOH . I 5 HOH A 107 2807 72 HOH HOH . I 5 HOH A 108 2808 11 HOH HOH . I 5 HOH A 109 2809 161 HOH HOH . I 5 HOH A 110 2810 14 HOH HOH . I 5 HOH A 111 2811 174 HOH HOH . I 5 HOH A 112 2812 71 HOH HOH . I 5 HOH A 113 2813 34 HOH HOH . I 5 HOH A 114 2814 9 HOH HOH . I 5 HOH A 115 2815 225 HOH HOH . I 5 HOH A 116 2816 58 HOH HOH . I 5 HOH A 117 2817 114 HOH HOH . I 5 HOH A 118 2818 207 HOH HOH . I 5 HOH A 119 2819 214 HOH HOH . I 5 HOH A 120 2820 194 HOH HOH . I 5 HOH A 121 2821 156 HOH HOH . I 5 HOH A 122 2822 67 HOH HOH . I 5 HOH A 123 2823 113 HOH HOH . I 5 HOH A 124 2824 228 HOH HOH . I 5 HOH A 125 2825 46 HOH HOH . I 5 HOH A 126 2826 73 HOH HOH . I 5 HOH A 127 2827 68 HOH HOH . I 5 HOH A 128 2828 131 HOH HOH . I 5 HOH A 129 2829 123 HOH HOH . I 5 HOH A 130 2830 10 HOH HOH . I 5 HOH A 131 2831 87 HOH HOH . I 5 HOH A 132 2832 224 HOH HOH . I 5 HOH A 133 2833 184 HOH HOH . I 5 HOH A 134 2834 20 HOH HOH . I 5 HOH A 135 2835 36 HOH HOH . I 5 HOH A 136 2836 132 HOH HOH . I 5 HOH A 137 2837 45 HOH HOH . I 5 HOH A 138 2838 151 HOH HOH . I 5 HOH A 139 2839 24 HOH HOH . I 5 HOH A 140 2840 124 HOH HOH . I 5 HOH A 141 2841 205 HOH HOH . I 5 HOH A 142 2842 38 HOH HOH . I 5 HOH A 143 2843 4 HOH HOH . I 5 HOH A 144 2844 6 HOH HOH . I 5 HOH A 145 2845 42 HOH HOH . I 5 HOH A 146 2846 75 HOH HOH . I 5 HOH A 147 2847 148 HOH HOH . I 5 HOH A 148 2848 218 HOH HOH . I 5 HOH A 149 2849 170 HOH HOH . I 5 HOH A 150 2850 86 HOH HOH . I 5 HOH A 151 2851 37 HOH HOH . I 5 HOH A 152 2852 13 HOH HOH . I 5 HOH A 153 2853 201 HOH HOH . I 5 HOH A 154 2854 107 HOH HOH . I 5 HOH A 155 2855 79 HOH HOH . I 5 HOH A 156 2856 152 HOH HOH . I 5 HOH A 157 2857 217 HOH HOH . I 5 HOH A 158 2858 121 HOH HOH . I 5 HOH A 159 2859 138 HOH HOH . I 5 HOH A 160 2860 39 HOH HOH . I 5 HOH A 161 2861 35 HOH HOH . I 5 HOH A 162 2862 96 HOH HOH . I 5 HOH A 163 2863 147 HOH HOH . I 5 HOH A 164 2864 192 HOH HOH . I 5 HOH A 165 2865 222 HOH HOH . I 5 HOH A 166 2866 92 HOH HOH . I 5 HOH A 167 2867 133 HOH HOH . I 5 HOH A 168 2868 93 HOH HOH . I 5 HOH A 169 2869 60 HOH HOH . I 5 HOH A 170 2870 167 HOH HOH . I 5 HOH A 171 2871 215 HOH HOH . I 5 HOH A 172 2872 125 HOH HOH . I 5 HOH A 173 2873 144 HOH HOH . I 5 HOH A 174 2874 149 HOH HOH . I 5 HOH A 175 2875 146 HOH HOH . I 5 HOH A 176 2876 101 HOH HOH . I 5 HOH A 177 2877 180 HOH HOH . I 5 HOH A 178 2878 55 HOH HOH . I 5 HOH A 179 2879 98 HOH HOH . I 5 HOH A 180 2880 232 HOH HOH . I 5 HOH A 181 2881 176 HOH HOH . I 5 HOH A 182 2882 189 HOH HOH . I 5 HOH A 183 2883 231 HOH HOH . I 5 HOH A 184 2884 100 HOH HOH . I 5 HOH A 185 2885 185 HOH HOH . I 5 HOH A 186 2886 195 HOH HOH . I 5 HOH A 187 2887 69 HOH HOH . I 5 HOH A 188 2888 120 HOH HOH . I 5 HOH A 189 2889 128 HOH HOH . I 5 HOH A 190 2890 157 HOH HOH . I 5 HOH A 191 2891 193 HOH HOH . I 5 HOH A 192 2892 139 HOH HOH . I 5 HOH A 193 2893 65 HOH HOH . I 5 HOH A 194 2894 175 HOH HOH . I 5 HOH A 195 2895 230 HOH HOH . I 5 HOH A 196 2896 162 HOH HOH . I 5 HOH A 197 2897 142 HOH HOH . I 5 HOH A 198 2898 216 HOH HOH . I 5 HOH A 199 2899 203 HOH HOH . I 5 HOH A 200 2900 181 HOH HOH . I 5 HOH A 201 2901 89 HOH HOH . I 5 HOH A 202 2902 229 HOH HOH . I 5 HOH A 203 2903 196 HOH HOH . I 5 HOH A 204 2904 197 HOH HOH . I 5 HOH A 205 2905 199 HOH HOH . I 5 HOH A 206 2906 126 HOH HOH . I 5 HOH A 207 2907 119 HOH HOH . I 5 HOH A 208 2908 106 HOH HOH . I 5 HOH A 209 2909 82 HOH HOH . I 5 HOH A 210 2910 198 HOH HOH . I 5 HOH A 211 2911 179 HOH HOH . I 5 HOH A 212 2912 186 HOH HOH . I 5 HOH A 213 2913 172 HOH HOH . I 5 HOH A 214 2914 80 HOH HOH . I 5 HOH A 215 2915 173 HOH HOH . I 5 HOH A 216 2916 200 HOH HOH . I 5 HOH A 217 2917 226 HOH HOH . I 5 HOH A 218 2918 188 HOH HOH . I 5 HOH A 219 2919 206 HOH HOH . I 5 HOH A 220 2920 108 HOH HOH . I 5 HOH A 221 2921 202 HOH HOH . I 5 HOH A 222 2922 143 HOH HOH . I 5 HOH A 223 2923 158 HOH HOH . I 5 HOH A 224 2924 223 HOH HOH . I 5 HOH A 225 2925 182 HOH HOH . I 5 HOH A 226 2926 127 HOH HOH . I 5 HOH A 227 2927 204 HOH HOH . I 5 HOH A 228 2928 90 HOH HOH . I 5 HOH A 229 2929 177 HOH HOH . I 5 HOH A 230 2930 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 4 3.486 8.703 14.908 0.67 50.73 ? S DMS 2605 A 1 HETATM 2 O O DMS . . . F 4 4.509 8.096 14.06 0.67 39.99 ? O DMS 2605 A 1 HETATM 3 C C1 DMS . . . F 4 3.256 10.399 14.301 0.67 42.35 ? C1 DMS 2605 A 1 HETATM 4 C C2 DMS . . . F 4 1.927 8.011 14.294 0.67 39.82 ? C2 DMS 2605 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #