data_7QMY # _model_server_result.job_id YbaHRnBQH7-yCBNtuMPngQ _model_server_result.datetime_utc '2024-11-07 16:07:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qmy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2607}' # _entry.id 7QMY # _exptl.entry_id 7QMY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.779 _cell.angle_gamma 90 _cell.entry_id 7QMY _cell.length_a 45.981 _cell.length_b 74.132 _cell.length_c 53.529 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QMY _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 H N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 344 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 379 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.033 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7QMY _atom_sites.fract_transf_matrix[1][1] 0.021748 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007821 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U1H A 1 2601 2601 U1H LIG . C 3 PG5 A 1 2602 2801 PG5 PG5 . D 4 DMS A 1 2603 2901 DMS DMS . E 4 DMS A 1 2604 3001 DMS DMS . F 4 DMS A 1 2605 3101 DMS DMS . G 2 U1H A 1 2606 3401 U1H LIG . H 4 DMS A 1 2607 3501 DMS DMS . I 5 HOH A 1 2701 148 HOH HOH . I 5 HOH A 2 2702 29 HOH HOH . I 5 HOH A 3 2703 54 HOH HOH . I 5 HOH A 4 2704 72 HOH HOH . I 5 HOH A 5 2705 17 HOH HOH . I 5 HOH A 6 2706 52 HOH HOH . I 5 HOH A 7 2707 66 HOH HOH . I 5 HOH A 8 2708 51 HOH HOH . I 5 HOH A 9 2709 5 HOH HOH . I 5 HOH A 10 2710 89 HOH HOH . I 5 HOH A 11 2711 27 HOH HOH . I 5 HOH A 12 2712 65 HOH HOH . I 5 HOH A 13 2713 143 HOH HOH . I 5 HOH A 14 2714 134 HOH HOH . I 5 HOH A 15 2715 70 HOH HOH . I 5 HOH A 16 2716 121 HOH HOH . I 5 HOH A 17 2717 98 HOH HOH . I 5 HOH A 18 2718 75 HOH HOH . I 5 HOH A 19 2719 62 HOH HOH . I 5 HOH A 20 2720 118 HOH HOH . I 5 HOH A 21 2721 22 HOH HOH . I 5 HOH A 22 2722 26 HOH HOH . I 5 HOH A 23 2723 96 HOH HOH . I 5 HOH A 24 2724 146 HOH HOH . I 5 HOH A 25 2725 32 HOH HOH . I 5 HOH A 26 2726 111 HOH HOH . I 5 HOH A 27 2727 21 HOH HOH . I 5 HOH A 28 2728 19 HOH HOH . I 5 HOH A 29 2729 112 HOH HOH . I 5 HOH A 30 2730 135 HOH HOH . I 5 HOH A 31 2731 56 HOH HOH . I 5 HOH A 32 2732 80 HOH HOH . I 5 HOH A 33 2733 59 HOH HOH . I 5 HOH A 34 2734 47 HOH HOH . I 5 HOH A 35 2735 28 HOH HOH . I 5 HOH A 36 2736 50 HOH HOH . I 5 HOH A 37 2737 11 HOH HOH . I 5 HOH A 38 2738 87 HOH HOH . I 5 HOH A 39 2739 23 HOH HOH . I 5 HOH A 40 2740 60 HOH HOH . I 5 HOH A 41 2741 125 HOH HOH . I 5 HOH A 42 2742 77 HOH HOH . I 5 HOH A 43 2743 133 HOH HOH . I 5 HOH A 44 2744 41 HOH HOH . I 5 HOH A 45 2745 46 HOH HOH . I 5 HOH A 46 2746 44 HOH HOH . I 5 HOH A 47 2747 68 HOH HOH . I 5 HOH A 48 2748 67 HOH HOH . I 5 HOH A 49 2749 86 HOH HOH . I 5 HOH A 50 2750 8 HOH HOH . I 5 HOH A 51 2751 7 HOH HOH . I 5 HOH A 52 2752 18 HOH HOH . I 5 HOH A 53 2753 55 HOH HOH . I 5 HOH A 54 2754 45 HOH HOH . I 5 HOH A 55 2755 1 HOH HOH . I 5 HOH A 56 2756 3 HOH HOH . I 5 HOH A 57 2757 39 HOH HOH . I 5 HOH A 58 2758 31 HOH HOH . I 5 HOH A 59 2759 30 HOH HOH . I 5 HOH A 60 2760 15 HOH HOH . I 5 HOH A 61 2761 71 HOH HOH . I 5 HOH A 62 2762 88 HOH HOH . I 5 HOH A 63 2763 25 HOH HOH . I 5 HOH A 64 2764 16 HOH HOH . I 5 HOH A 65 2765 2 HOH HOH . I 5 HOH A 66 2766 119 HOH HOH . I 5 HOH A 67 2767 48 HOH HOH . I 5 HOH A 68 2768 124 HOH HOH . I 5 HOH A 69 2769 69 HOH HOH . I 5 HOH A 70 2770 91 HOH HOH . I 5 HOH A 71 2771 73 HOH HOH . I 5 HOH A 72 2772 9 HOH HOH . I 5 HOH A 73 2773 42 HOH HOH . I 5 HOH A 74 2774 123 HOH HOH . I 5 HOH A 75 2775 12 HOH HOH . I 5 HOH A 76 2776 49 HOH HOH . I 5 HOH A 77 2777 43 HOH HOH . I 5 HOH A 78 2778 138 HOH HOH . I 5 HOH A 79 2779 145 HOH HOH . I 5 HOH A 80 2780 14 HOH HOH . I 5 HOH A 81 2781 82 HOH HOH . I 5 HOH A 82 2782 4 HOH HOH . I 5 HOH A 83 2783 6 HOH HOH . I 5 HOH A 84 2784 94 HOH HOH . I 5 HOH A 85 2785 13 HOH HOH . I 5 HOH A 86 2786 10 HOH HOH . I 5 HOH A 87 2787 81 HOH HOH . I 5 HOH A 88 2788 99 HOH HOH . I 5 HOH A 89 2789 35 HOH HOH . I 5 HOH A 90 2790 57 HOH HOH . I 5 HOH A 91 2791 95 HOH HOH . I 5 HOH A 92 2792 40 HOH HOH . I 5 HOH A 93 2793 24 HOH HOH . I 5 HOH A 94 2794 58 HOH HOH . I 5 HOH A 95 2795 105 HOH HOH . I 5 HOH A 96 2796 37 HOH HOH . I 5 HOH A 97 2797 20 HOH HOH . I 5 HOH A 98 2798 142 HOH HOH . I 5 HOH A 99 2799 85 HOH HOH . I 5 HOH A 100 2800 130 HOH HOH . I 5 HOH A 101 2801 76 HOH HOH . I 5 HOH A 102 2802 79 HOH HOH . I 5 HOH A 103 2803 34 HOH HOH . I 5 HOH A 104 2804 84 HOH HOH . I 5 HOH A 105 2805 78 HOH HOH . I 5 HOH A 106 2806 101 HOH HOH . I 5 HOH A 107 2807 141 HOH HOH . I 5 HOH A 108 2808 53 HOH HOH . I 5 HOH A 109 2809 129 HOH HOH . I 5 HOH A 110 2810 127 HOH HOH . I 5 HOH A 111 2811 103 HOH HOH . I 5 HOH A 112 2812 109 HOH HOH . I 5 HOH A 113 2813 63 HOH HOH . I 5 HOH A 114 2814 113 HOH HOH . I 5 HOH A 115 2815 108 HOH HOH . I 5 HOH A 116 2816 152 HOH HOH . I 5 HOH A 117 2817 74 HOH HOH . I 5 HOH A 118 2818 140 HOH HOH . I 5 HOH A 119 2819 131 HOH HOH . I 5 HOH A 120 2820 106 HOH HOH . I 5 HOH A 121 2821 132 HOH HOH . I 5 HOH A 122 2822 36 HOH HOH . I 5 HOH A 123 2823 110 HOH HOH . I 5 HOH A 124 2824 33 HOH HOH . I 5 HOH A 125 2825 92 HOH HOH . I 5 HOH A 126 2826 38 HOH HOH . I 5 HOH A 127 2827 128 HOH HOH . I 5 HOH A 128 2828 117 HOH HOH . I 5 HOH A 129 2829 116 HOH HOH . I 5 HOH A 130 2830 122 HOH HOH . I 5 HOH A 131 2831 97 HOH HOH . I 5 HOH A 132 2832 64 HOH HOH . I 5 HOH A 133 2833 90 HOH HOH . I 5 HOH A 134 2834 61 HOH HOH . I 5 HOH A 135 2835 139 HOH HOH . I 5 HOH A 136 2836 93 HOH HOH . I 5 HOH A 137 2837 120 HOH HOH . I 5 HOH A 138 2838 114 HOH HOH . I 5 HOH A 139 2839 107 HOH HOH . I 5 HOH A 140 2840 147 HOH HOH . I 5 HOH A 141 2841 149 HOH HOH . I 5 HOH A 142 2842 83 HOH HOH . I 5 HOH A 143 2843 100 HOH HOH . I 5 HOH A 144 2844 151 HOH HOH . I 5 HOH A 145 2845 150 HOH HOH . I 5 HOH A 146 2846 104 HOH HOH . I 5 HOH A 147 2847 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 4 -9.833 -7.517 7.649 0.59 64.28 ? S DMS 2607 A 1 HETATM 2 O O DMS . . . H 4 -10.007 -6.096 7.356 0.59 52.97 ? O DMS 2607 A 1 HETATM 3 C C1 DMS . . . H 4 -11.46 -8.286 7.95 0.59 46.3 ? C1 DMS 2607 A 1 HETATM 4 C C2 DMS . . . H 4 -9.426 -8.221 6.03 0.59 40.54 ? C2 DMS 2607 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #