data_7QN7 # _model_server_result.job_id ihrw6nflaCvoBqPz-oj-Qg _model_server_result.datetime_utc '2024-10-10 07:19:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":503}' # _entry.id 7QN7 # _exptl.entry_id 7QN7 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 142.282 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QN7 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 P N N ? 8 T N N ? 8 Y N N ? 8 BA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 5 5 3 MAN BMA C1 O1 . O6 HO6 . sing 5 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n H NAG 1 a 1 NAG a 1 NAG 5 n H NAG 2 a 2 NAG a 2 NAG 5 n H BMA 3 a 3 BMA a 3 BMA 5 n H MAN 4 a 4 MAN a 4 MAN 5 n H MAN 5 a 5 MAN a 5 MAN 6 n I NAG 1 b 1 NAG b 1 NAG 6 n I NAG 2 b 2 NAG b 2 NAG 5 n J NAG 1 H 1 NAG b 3 NAG 5 n J NAG 2 H 2 NAG b 4 NAG 5 n J BMA 3 H 3 BMA b 5 BMA 5 n J MAN 4 H 4 MAN b 6 MAN 5 n J MAN 5 H 5 MAN b 7 MAN 6 n K NAG 1 c 1 NAG c 1 NAG 6 n K NAG 2 c 2 NAG c 2 NAG 5 n L NAG 1 I 1 NAG c 3 NAG 5 n L NAG 2 I 2 NAG c 4 NAG 5 n L BMA 3 I 3 BMA c 5 BMA 5 n L MAN 4 I 4 MAN c 6 MAN 5 n L MAN 5 I 5 MAN c 7 MAN 6 n M NAG 1 d 1 NAG d 1 NAG 6 n M NAG 2 d 2 NAG d 2 NAG 5 n N NAG 1 J 1 NAG d 3 NAG 5 n N NAG 2 J 2 NAG d 4 NAG 5 n N BMA 3 J 3 BMA d 5 BMA 5 n N MAN 4 J 4 MAN d 6 MAN 5 n N MAN 5 J 5 MAN d 7 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 172 1_555 A SG CYS 186 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 B SG CYS 161 B CYS 136 1_555 B SG CYS 175 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 161 C CYS 136 1_555 C SG CYS 175 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 161 D CYS 136 1_555 D SG CYS 175 D CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 164 E CYS 164 1_555 E SG CYS 178 E CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 F SG CYS 20 F CYS 409 1_555 F SG CYS 94 F CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf7 G SG CYS 20 G CYS 409 1_555 G SG CYS 94 G CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 144 A ASN 144 1_555 H C1 NAG . a NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 A ND2 ASN 157 A ASN 157 1_555 Q C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B ND2 ASN 33 B ASN 8 1_555 U C1 NAG . B NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale4 B ND2 ASN 105 B ASN 80 1_555 I C1 NAG . b NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale5 B ND2 ASN 174 B ASN 149 1_555 J C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale6 C ND2 ASN 33 C ASN 8 1_555 W C1 NAG . C NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale7 C ND2 ASN 105 C ASN 80 1_555 K C1 NAG . c NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale8 C ND2 ASN 174 C ASN 149 1_555 L C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.422 ? covale ? covale9 D ND2 ASN 33 D ASN 8 1_555 Z C1 NAG . D NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 D ND2 ASN 105 D ASN 80 1_555 M C1 NAG . d NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? covale ? covale11 D ND2 ASN 174 D ASN 149 1_555 N C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale12 E ND2 ASN 65 E ASN 65 1_555 CA C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 E ND2 ASN 103 E ASN 103 1_555 DA C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 H O4 NAG . a NAG 1 1_555 H C1 NAG . a NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 H O4 NAG . a NAG 2 1_555 H C1 BMA . a BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale16 H O3 BMA . a BMA 3 1_555 H C1 MAN . a MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale17 H O6 BMA . a BMA 3 1_555 H C1 MAN . a MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale18 I O4 NAG . b NAG 1 1_555 I C1 NAG . b NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale19 J O4 NAG . H NAG 1 1_555 J C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale20 J O4 NAG . H NAG 2 1_555 J C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale21 J O3 BMA . H BMA 3 1_555 J C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale22 J O6 BMA . H BMA 3 1_555 J C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale23 K O4 NAG . c NAG 1 1_555 K C1 NAG . c NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale24 L O4 NAG . I NAG 1 1_555 L C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale25 L O4 NAG . I NAG 2 1_555 L C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale26 L O3 BMA . I BMA 3 1_555 L C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale27 L O6 BMA . I BMA 3 1_555 L C1 MAN . I MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale28 M O4 NAG . d NAG 1 1_555 M C1 NAG . d NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale29 N O4 NAG . J NAG 1 1_555 N C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale30 N O4 NAG . J NAG 2 1_555 N C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale31 N O3 BMA . J BMA 3 1_555 N C1 MAN . J MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale32 N O6 BMA . J BMA 3 1_555 N C1 MAN . J MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 122 n n C1 H11 D10 sing 123 n n C1 H12 D10 sing 124 n n C1 H13 D10 sing 125 n n C2 C3 D10 sing 126 n n C2 H21 D10 sing 127 n n C2 H22 D10 sing 128 n n C3 C4 D10 sing 129 n n C3 H31 D10 sing 130 n n C3 H32 D10 sing 131 n n C4 C5 D10 sing 132 n n C4 H41 D10 sing 133 n n C4 H42 D10 sing 134 n n C5 C6 D10 sing 135 n n C5 H51 D10 sing 136 n n C5 H52 D10 sing 137 n n C6 C7 D10 sing 138 n n C6 H61 D10 sing 139 n n C6 H62 D10 sing 140 n n C7 C8 D10 sing 141 n n C7 H71 D10 sing 142 n n C7 H72 D10 sing 143 n n C8 C9 D10 sing 144 n n C8 H81 D10 sing 145 n n C8 H82 D10 sing 146 n n C9 C10 D10 sing 147 n n C9 H91 D10 sing 148 n n C9 H92 D10 sing 149 n n C10 H101 D10 sing 150 n n C10 H102 D10 sing 151 n n C10 H103 D10 sing 152 n n # _atom_sites.entry_id 7QN7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 7 PX6 A 1 601 601 PX6 PX6 . P 8 D10 A 1 602 602 D10 D10 . Q 9 NAG A 1 603 6 NAG NAG . R 10 ABU B 1 501 508 ABU ABU . S 11 R16 B 1 502 509 R16 R16 . T 8 D10 B 1 503 10 D10 D10 . U 9 NAG B 1 504 8 NAG NAG . V 11 R16 C 1 501 501 R16 R16 . W 9 NAG C 1 502 8 NAG NAG . X 12 HSM C 1 503 9 HSM HSM . Y 8 D10 D 1 501 10 D10 D10 . Z 9 NAG D 1 502 8 NAG NAG . AA 12 HSM D 1 503 9 HSM HSM . BA 8 D10 E 1 501 501 D10 D10 . CA 9 NAG E 1 502 1 NAG NAG . DA 9 NAG E 1 503 2 NAG NAG . EA 13 HOH A 1 701 3 HOH HOH . EA 13 HOH A 2 702 1 HOH HOH . EA 13 HOH A 3 703 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . T 8 160.316 132.263 153.847 1 103.99 ? C1 D10 503 B 1 HETATM 2 C C2 D10 . . . T 8 161.062 131.353 152.901 1 103.99 ? C2 D10 503 B 1 HETATM 3 C C3 D10 . . . T 8 160.835 131.702 151.442 1 103.99 ? C3 D10 503 B 1 HETATM 4 C C4 D10 . . . T 8 161.617 130.836 150.47 1 103.99 ? C4 D10 503 B 1 HETATM 5 C C5 D10 . . . T 8 161.449 131.238 149.015 1 103.99 ? C5 D10 503 B 1 HETATM 6 C C6 D10 . . . T 8 162.314 130.44 148.056 1 103.99 ? C6 D10 503 B 1 HETATM 7 C C7 D10 . . . T 8 162.213 130.896 146.611 1 103.99 ? C7 D10 503 B 1 HETATM 8 C C8 D10 . . . T 8 163.148 130.158 145.669 1 103.99 ? C8 D10 503 B 1 HETATM 9 C C9 D10 . . . T 8 163.089 130.639 144.231 1 103.99 ? C9 D10 503 B 1 HETATM 10 C C10 D10 . . . T 8 164.066 129.92 143.331 1 103.99 ? C10 D10 503 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #