data_7QN9 # _model_server_result.job_id ErFpKpXpqAEl1KWTzT-3Ew _model_server_result.datetime_utc '2024-11-22 23:51:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qn9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":501}' # _entry.id 7QN9 # _exptl.entry_id 7QN9 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QN9 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QN9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 O N N ? 8 U N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 6 ? 7 4 3 MAN BMA C1 O1 . O3 HO3 . sing 7 ? 7 5 3 MAN BMA C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n H NAG 1 a 1 NAG a 1 NAG 5 n H NAG 2 a 2 NAG a 2 NAG 5 n H BMA 3 a 3 BMA a 3 BMA 6 n I NAG 1 b 1 NAG b 1 NAG 6 n I NAG 2 b 2 NAG b 2 NAG 7 n J NAG 1 F 1 NAG b 3 NAG 7 n J NAG 2 F 2 NAG b 4 NAG 7 n J BMA 3 F 3 BMA b 5 BMA 7 n J MAN 4 F 4 MAN b 6 MAN 7 n J MAN 5 F 5 MAN b 7 MAN 6 n K NAG 1 c 1 NAG c 1 NAG 6 n K NAG 2 c 2 NAG c 2 NAG 7 n L NAG 1 G 1 NAG c 3 NAG 7 n L NAG 2 G 2 NAG c 4 NAG 7 n L BMA 3 G 3 BMA c 5 BMA 7 n L MAN 4 G 4 MAN c 6 MAN 7 n L MAN 5 G 5 MAN c 7 MAN 6 n M NAG 1 d 1 NAG d 1 NAG 6 n M NAG 2 d 2 NAG d 2 NAG 7 n N NAG 1 H 1 NAG d 3 NAG 7 n N NAG 2 H 2 NAG d 4 NAG 7 n N BMA 3 H 3 BMA d 5 BMA 7 n N MAN 4 H 4 MAN d 6 MAN 7 n N MAN 5 H 5 MAN d 7 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 172 A CYS 172 1_555 A SG CYS 186 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 161 B CYS 136 1_555 B SG CYS 175 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 161 C CYS 136 1_555 C SG CYS 175 C CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 161 D CYS 136 1_555 D SG CYS 175 D CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 E SG CYS 164 E CYS 164 1_555 E SG CYS 178 E CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 F SG CYS 20 L CYS 409 1_555 F SG CYS 94 L CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 G SG CYS 20 M CYS 409 1_555 G SG CYS 94 M CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 144 A ASN 144 1_555 H C1 NAG . a NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 157 A ASN 157 1_555 O C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 B ND2 ASN 105 B ASN 80 1_555 I C1 NAG . b NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B ND2 ASN 174 B ASN 149 1_555 J C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale5 C ND2 ASN 105 C ASN 80 1_555 K C1 NAG . c NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 C ND2 ASN 174 C ASN 149 1_555 L C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale7 D ND2 ASN 105 D ASN 80 1_555 M C1 NAG . d NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale8 D ND2 ASN 174 D ASN 149 1_555 N C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 E ND2 ASN 65 E ASN 65 1_555 U C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale10 H O4 NAG . a NAG 1 1_555 H C1 NAG . a NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 H O4 NAG . a NAG 2 1_555 H C1 BMA . a BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 I O4 NAG . b NAG 1 1_555 I C1 NAG . b NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale13 J O4 NAG . F NAG 1 1_555 J C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale14 J O4 NAG . F NAG 2 1_555 J C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale15 J O3 BMA . F BMA 3 1_555 J C1 MAN . F MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 J O6 BMA . F BMA 3 1_555 J C1 MAN . F MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale17 K O4 NAG . c NAG 1 1_555 K C1 NAG . c NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale18 L O4 NAG . G NAG 1 1_555 L C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale19 L O4 NAG . G NAG 2 1_555 L C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale20 L O3 BMA . G BMA 3 1_555 L C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale21 L O6 BMA . G BMA 3 1_555 L C1 MAN . G MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale22 M O4 NAG . d NAG 1 1_555 M C1 NAG . d NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale23 N O4 NAG . H NAG 1 1_555 N C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale24 N O4 NAG . H NAG 2 1_555 N C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale25 N O3 BMA . H BMA 3 1_555 N C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale26 N O6 BMA . H BMA 3 1_555 N C1 MAN . H MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 331 n n C1 O1 NAG sing 332 n n C1 O5 NAG sing 333 n n C1 H1 NAG sing 334 n n C2 C3 NAG sing 335 n n C2 N2 NAG sing 336 n n C2 H2 NAG sing 337 n n C3 C4 NAG sing 338 n n C3 O3 NAG sing 339 n n C3 H3 NAG sing 340 n n C4 C5 NAG sing 341 n n C4 O4 NAG sing 342 n n C4 H4 NAG sing 343 n n C5 C6 NAG sing 344 n n C5 O5 NAG sing 345 n n C5 H5 NAG sing 346 n n C6 O6 NAG sing 347 n n C6 H61 NAG sing 348 n n C6 H62 NAG sing 349 n n C7 C8 NAG sing 350 n n C7 N2 NAG sing 351 n n C7 O7 NAG doub 352 n n C8 H81 NAG sing 353 n n C8 H82 NAG sing 354 n n C8 H83 NAG sing 355 n n N2 HN2 NAG sing 356 n n O1 HO1 NAG sing 357 n n O3 HO3 NAG sing 358 n n O4 HO4 NAG sing 359 n n O6 HO6 NAG sing 360 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 7QN9 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code O 8 NAG A 1 601 6 NAG NAG . P 9 HSM B 1 501 502 HSM HSM . Q 10 R16 B 1 502 509 R16 R16 . R 9 HSM C 1 501 9 HSM HSM . S 11 D10 D 1 501 10 D10 D10 . T 9 HSM D 1 502 9 HSM HSM . U 8 NAG E 1 501 1 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . U 8 94.13 107.808 102.829 1 112.61 ? C1 NAG 501 E 1 HETATM 2 C C2 NAG . . . U 8 93.838 106.452 103.468 1 112.61 ? C2 NAG 501 E 1 HETATM 3 C C3 NAG . . . U 8 92.467 106.472 104.14 1 112.61 ? C3 NAG 501 E 1 HETATM 4 C C4 NAG . . . U 8 92.387 107.632 105.123 1 112.61 ? C4 NAG 501 E 1 HETATM 5 C C5 NAG . . . U 8 92.74 108.939 104.418 1 112.61 ? C5 NAG 501 E 1 HETATM 6 C C6 NAG . . . U 8 92.788 110.12 105.358 1 112.61 ? C6 NAG 501 E 1 HETATM 7 C C7 NAG . . . U 8 94.853 104.442 102.495 1 112.61 ? C7 NAG 501 E 1 HETATM 8 C C8 NAG . . . U 8 94.78 103.424 101.395 1 112.61 ? C8 NAG 501 E 1 HETATM 9 N N2 NAG . . . U 8 93.909 105.387 102.481 1 112.61 ? N2 NAG 501 E 1 HETATM 10 O O3 NAG . . . U 8 92.256 105.241 104.822 1 112.61 ? O3 NAG 501 E 1 HETATM 11 O O4 NAG . . . U 8 91.072 107.727 105.658 1 112.61 ? O4 NAG 501 E 1 HETATM 12 O O5 NAG . . . U 8 94.041 108.832 103.82 1 112.61 ? O5 NAG 501 E 1 HETATM 13 O O6 NAG . . . U 8 93.781 109.948 106.361 1 112.61 ? O6 NAG 501 E 1 HETATM 14 O O7 NAG . . . U 8 95.728 104.408 103.356 1 112.61 ? O7 NAG 501 E 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #