data_7QNN # _model_server_result.job_id cpdgeTH63tq_gp107c23Aw _model_server_result.datetime_utc '2024-11-06 00:49:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qnn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 7QNN # _exptl.entry_id 7QNN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QNN _cell.length_a 54.364 _cell.length_b 120.02 _cell.length_c 145.615 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QNN _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 362 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 377 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.321 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 182 n n CHA C4D HEM doub 183 n n CHA HHA HEM sing 184 n n CHB C4A HEM sing 185 n n CHB C1B HEM doub 186 n n CHB HHB HEM sing 187 n n CHC C4B HEM sing 188 n n CHC C1C HEM doub 189 n n CHC HHC HEM sing 190 n n CHD C4C HEM doub 191 n n CHD C1D HEM sing 192 n n CHD HHD HEM sing 193 n n C1A C2A HEM doub 194 n y C1A NA HEM sing 195 n y C2A C3A HEM sing 196 n y C2A CAA HEM sing 197 n n C3A C4A HEM doub 198 n y C3A CMA HEM sing 199 n n C4A NA HEM sing 200 n y CMA HMA HEM sing 201 n n CMA HMAA HEM sing 202 n n CMA HMAB HEM sing 203 n n CAA CBA HEM sing 204 n n CAA HAA HEM sing 205 n n CAA HAAA HEM sing 206 n n CBA CGA HEM sing 207 n n CBA HBA HEM sing 208 n n CBA HBAA HEM sing 209 n n CGA O1A HEM doub 210 n n CGA O2A HEM sing 211 n n C1B C2B HEM sing 212 n n C1B NB HEM sing 213 n n C2B C3B HEM doub 214 n n C2B CMB HEM sing 215 n n C3B C4B HEM sing 216 n n C3B CAB HEM sing 217 n n C4B NB HEM doub 218 n n CMB HMB HEM sing 219 n n CMB HMBA HEM sing 220 n n CMB HMBB HEM sing 221 n n CAB CBB HEM doub 222 n n CAB HAB HEM sing 223 n n CBB HBB HEM sing 224 n n CBB HBBA HEM sing 225 n n C1C C2C HEM sing 226 n y C1C NC HEM sing 227 n y C2C C3C HEM doub 228 n y C2C CMC HEM sing 229 n n C3C C4C HEM sing 230 n y C3C CAC HEM sing 231 n n C4C NC HEM sing 232 n y CMC HMC HEM sing 233 n n CMC HMCA HEM sing 234 n n CMC HMCB HEM sing 235 n n CAC CBC HEM doub 236 n n CAC HAC HEM sing 237 n n CBC HBC HEM sing 238 n n CBC HBCA HEM sing 239 n n C1D C2D HEM sing 240 n n C1D ND HEM doub 241 n n C2D C3D HEM doub 242 n n C2D CMD HEM sing 243 n n C3D C4D HEM sing 244 n n C3D CAD HEM sing 245 n n C4D ND HEM sing 246 n n CMD HMD HEM sing 247 n n CMD HMDA HEM sing 248 n n CMD HMDB HEM sing 249 n n CAD CBD HEM sing 250 n n CAD HAD HEM sing 251 n n CAD HADA HEM sing 252 n n CBD CGD HEM sing 253 n n CBD HBD HEM sing 254 n n CBD HBDA HEM sing 255 n n CGD O1D HEM doub 256 n n CGD O2D HEM sing 257 n n O2A H2A HEM sing 258 n n O2D H2D HEM sing 259 n n FE NA HEM sing 260 n n FE NB HEM sing 261 n n FE NC HEM sing 262 n n FE ND HEM sing 263 n n # _atom_sites.entry_id 7QNN _atom_sites.fract_transf_matrix[1][1] 0.018395 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006867 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 E93 A 1 502 502 E93 459 . D 4 HOH A 1 601 80 HOH HOH . D 4 HOH A 2 602 88 HOH HOH . D 4 HOH A 3 603 40 HOH HOH . D 4 HOH A 4 604 44 HOH HOH . D 4 HOH A 5 605 7 HOH HOH . D 4 HOH A 6 606 38 HOH HOH . D 4 HOH A 7 607 19 HOH HOH . D 4 HOH A 8 608 15 HOH HOH . D 4 HOH A 9 609 21 HOH HOH . D 4 HOH A 10 610 84 HOH HOH . D 4 HOH A 11 611 42 HOH HOH . D 4 HOH A 12 612 113 HOH HOH . D 4 HOH A 13 613 82 HOH HOH . D 4 HOH A 14 614 115 HOH HOH . D 4 HOH A 15 615 91 HOH HOH . D 4 HOH A 16 616 114 HOH HOH . D 4 HOH A 17 617 121 HOH HOH . D 4 HOH A 18 618 27 HOH HOH . D 4 HOH A 19 619 94 HOH HOH . D 4 HOH A 20 620 65 HOH HOH . D 4 HOH A 21 621 10 HOH HOH . D 4 HOH A 22 622 71 HOH HOH . D 4 HOH A 23 623 29 HOH HOH . D 4 HOH A 24 624 69 HOH HOH . D 4 HOH A 25 625 86 HOH HOH . D 4 HOH A 26 626 32 HOH HOH . D 4 HOH A 27 627 64 HOH HOH . D 4 HOH A 28 628 26 HOH HOH . D 4 HOH A 29 629 43 HOH HOH . D 4 HOH A 30 630 13 HOH HOH . D 4 HOH A 31 631 116 HOH HOH . D 4 HOH A 32 632 109 HOH HOH . D 4 HOH A 33 633 22 HOH HOH . D 4 HOH A 34 634 11 HOH HOH . D 4 HOH A 35 635 5 HOH HOH . D 4 HOH A 36 636 58 HOH HOH . D 4 HOH A 37 637 48 HOH HOH . D 4 HOH A 38 638 46 HOH HOH . D 4 HOH A 39 639 1 HOH HOH . D 4 HOH A 40 640 41 HOH HOH . D 4 HOH A 41 641 9 HOH HOH . D 4 HOH A 42 642 89 HOH HOH . D 4 HOH A 43 643 39 HOH HOH . D 4 HOH A 44 644 81 HOH HOH . D 4 HOH A 45 645 18 HOH HOH . D 4 HOH A 46 646 90 HOH HOH . D 4 HOH A 47 647 117 HOH HOH . D 4 HOH A 48 648 3 HOH HOH . D 4 HOH A 49 649 16 HOH HOH . D 4 HOH A 50 650 17 HOH HOH . D 4 HOH A 51 651 8 HOH HOH . D 4 HOH A 52 652 4 HOH HOH . D 4 HOH A 53 653 36 HOH HOH . D 4 HOH A 54 654 61 HOH HOH . D 4 HOH A 55 655 31 HOH HOH . D 4 HOH A 56 656 119 HOH HOH . D 4 HOH A 57 657 99 HOH HOH . D 4 HOH A 58 658 57 HOH HOH . D 4 HOH A 59 659 56 HOH HOH . D 4 HOH A 60 660 24 HOH HOH . D 4 HOH A 61 661 23 HOH HOH . D 4 HOH A 62 662 62 HOH HOH . D 4 HOH A 63 663 70 HOH HOH . D 4 HOH A 64 664 92 HOH HOH . D 4 HOH A 65 665 20 HOH HOH . D 4 HOH A 66 666 83 HOH HOH . D 4 HOH A 67 667 66 HOH HOH . D 4 HOH A 68 668 30 HOH HOH . D 4 HOH A 69 669 12 HOH HOH . D 4 HOH A 70 670 67 HOH HOH . D 4 HOH A 71 671 72 HOH HOH . D 4 HOH A 72 672 120 HOH HOH . D 4 HOH A 73 673 34 HOH HOH . D 4 HOH A 74 674 6 HOH HOH . D 4 HOH A 75 675 35 HOH HOH . D 4 HOH A 76 676 60 HOH HOH . D 4 HOH A 77 677 2 HOH HOH . D 4 HOH A 78 678 55 HOH HOH . D 4 HOH A 79 679 50 HOH HOH . D 4 HOH A 80 680 79 HOH HOH . D 4 HOH A 81 681 85 HOH HOH . D 4 HOH A 82 682 75 HOH HOH . D 4 HOH A 83 683 28 HOH HOH . D 4 HOH A 84 684 54 HOH HOH . D 4 HOH A 85 685 45 HOH HOH . D 4 HOH A 86 686 76 HOH HOH . D 4 HOH A 87 687 47 HOH HOH . D 4 HOH A 88 688 25 HOH HOH . D 4 HOH A 89 689 78 HOH HOH . D 4 HOH A 90 690 74 HOH HOH . D 4 HOH A 91 691 96 HOH HOH . D 4 HOH A 92 692 101 HOH HOH . D 4 HOH A 93 693 105 HOH HOH . D 4 HOH A 94 694 106 HOH HOH . D 4 HOH A 95 695 33 HOH HOH . D 4 HOH A 96 696 51 HOH HOH . D 4 HOH A 97 697 77 HOH HOH . D 4 HOH A 98 698 63 HOH HOH . D 4 HOH A 99 699 14 HOH HOH . D 4 HOH A 100 700 93 HOH HOH . D 4 HOH A 101 701 95 HOH HOH . D 4 HOH A 102 702 68 HOH HOH . D 4 HOH A 103 703 52 HOH HOH . D 4 HOH A 104 704 37 HOH HOH . D 4 HOH A 105 705 102 HOH HOH . D 4 HOH A 106 706 112 HOH HOH . D 4 HOH A 107 707 98 HOH HOH . D 4 HOH A 108 708 103 HOH HOH . D 4 HOH A 109 709 59 HOH HOH . D 4 HOH A 110 710 110 HOH HOH . D 4 HOH A 111 711 49 HOH HOH . D 4 HOH A 112 712 118 HOH HOH . D 4 HOH A 113 713 108 HOH HOH . D 4 HOH A 114 714 53 HOH HOH . D 4 HOH A 115 715 87 HOH HOH . D 4 HOH A 116 716 73 HOH HOH . D 4 HOH A 117 717 111 HOH HOH . D 4 HOH A 118 718 107 HOH HOH . D 4 HOH A 119 719 100 HOH HOH . D 4 HOH A 120 720 104 HOH HOH . D 4 HOH A 121 721 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -26.666 -23.023 -17.371 1 39.23 ? CHA HEM 501 A 1 HETATM 2 C CHB HEM . . . B 2 -22.842 -21.731 -20.063 1 37.55 ? CHB HEM 501 A 1 HETATM 3 C CHC HEM . . . B 2 -24.217 -17.062 -19.951 1 42.91 ? CHC HEM 501 A 1 HETATM 4 C CHD HEM . . . B 2 -27.639 -18.318 -16.72 1 42.09 ? CHD HEM 501 A 1 HETATM 5 C C1A HEM . . . B 2 -25.53 -23.084 -18.143 1 35.12 ? C1A HEM 501 A 1 HETATM 6 C C2A HEM . . . B 2 -24.833 -24.292 -18.539 1 37.64 ? C2A HEM 501 A 1 HETATM 7 C C3A HEM . . . B 2 -23.779 -23.931 -19.279 1 42.92 ? C3A HEM 501 A 1 HETATM 8 C C4A HEM . . . B 2 -23.771 -22.485 -19.378 1 40.56 ? C4A HEM 501 A 1 HETATM 9 C CMA HEM . . . B 2 -22.736 -24.873 -19.925 1 34.73 ? CMA HEM 501 A 1 HETATM 10 C CAA HEM . . . B 2 -25.248 -25.734 -18.157 1 34.14 ? CAA HEM 501 A 1 HETATM 11 C CBA HEM . . . B 2 -25.73 -26.494 -19.39 1 39.2 ? CBA HEM 501 A 1 HETATM 12 C CGA HEM . . . B 2 -26.214 -27.873 -19.021 1 47.55 ? CGA HEM 501 A 1 HETATM 13 O O1A HEM . . . B 2 -25.997 -28.297 -17.856 1 34.82 ? O1A HEM 501 A 1 HETATM 14 O O2A HEM . . . B 2 -26.822 -28.551 -19.895 1 51.26 ? O2A HEM 501 A 1 HETATM 15 C C1B HEM . . . B 2 -22.881 -20.372 -20.287 1 39.7 ? C1B HEM 501 A 1 HETATM 16 C C2B HEM . . . B 2 -21.938 -19.632 -21.089 1 42.42 ? C2B HEM 501 A 1 HETATM 17 C C3B HEM . . . B 2 -22.292 -18.348 -21.083 1 36.98 ? C3B HEM 501 A 1 HETATM 18 C C4B HEM . . . B 2 -23.493 -18.204 -20.26 1 41.62 ? C4B HEM 501 A 1 HETATM 19 C CMB HEM . . . B 2 -20.73 -20.236 -21.834 1 45.69 ? CMB HEM 501 A 1 HETATM 20 C CAB HEM . . . B 2 -21.48 -17.286 -21.854 1 43.12 ? CAB HEM 501 A 1 HETATM 21 C CBB HEM . . . B 2 -21.887 -16.027 -21.981 1 47.23 ? CBB HEM 501 A 1 HETATM 22 C C1C HEM . . . B 2 -25.28 -16.986 -19.057 1 40.01 ? C1C HEM 501 A 1 HETATM 23 C C2C HEM . . . B 2 -26.036 -15.792 -18.698 1 41.85 ? C2C HEM 501 A 1 HETATM 24 C C3C HEM . . . B 2 -26.992 -16.154 -17.808 1 40.7 ? C3C HEM 501 A 1 HETATM 25 C C4C HEM . . . B 2 -26.852 -17.575 -17.574 1 41.03 ? C4C HEM 501 A 1 HETATM 26 C CMC HEM . . . B 2 -25.751 -14.385 -19.285 1 33.34 ? CMC HEM 501 A 1 HETATM 27 C CAC HEM . . . B 2 -28.076 -15.318 -17.069 1 39.82 ? CAC HEM 501 A 1 HETATM 28 C CBC HEM . . . B 2 -28.094 -13.981 -17.018 1 40.5 ? CBC HEM 501 A 1 HETATM 29 C C1D HEM . . . B 2 -27.664 -19.691 -16.608 1 40.06 ? C1D HEM 501 A 1 HETATM 30 C C2D HEM . . . B 2 -28.524 -20.452 -15.727 1 40.61 ? C2D HEM 501 A 1 HETATM 31 C C3D HEM . . . B 2 -28.269 -21.753 -15.9 1 38.65 ? C3D HEM 501 A 1 HETATM 32 C C4D HEM . . . B 2 -27.226 -21.86 -16.901 1 39.66 ? C4D HEM 501 A 1 HETATM 33 C CMD HEM . . . B 2 -29.558 -19.835 -14.765 1 39.9 ? CMD HEM 501 A 1 HETATM 34 C CAD HEM . . . B 2 -28.957 -22.929 -15.16 1 40.1 ? CAD HEM 501 A 1 HETATM 35 C CBD HEM . . . B 2 -29.944 -23.642 -16.086 1 44.82 ? CBD HEM 501 A 1 HETATM 36 C CGD HEM . . . B 2 -30.557 -24.841 -15.401 1 48.49 ? CGD HEM 501 A 1 HETATM 37 O O1D HEM . . . B 2 -31.765 -25.106 -15.643 1 42.6 ? O1D HEM 501 A 1 HETATM 38 O O2D HEM . . . B 2 -29.853 -25.524 -14.608 1 43.57 ? O2D HEM 501 A 1 HETATM 39 N NA HEM . . . B 2 -24.855 -21.999 -18.673 1 32.9 ? NA HEM 501 A 1 HETATM 40 N NB HEM . . . B 2 -23.81 -19.472 -19.799 1 42.37 ? NB HEM 501 A 1 HETATM 41 N NC HEM . . . B 2 -25.81 -18.05 -18.347 1 37.65 ? NC HEM 501 A 1 HETATM 42 N ND HEM . . . B 2 -26.882 -20.583 -17.313 1 39.98 ? ND HEM 501 A 1 HETATM 43 FE FE HEM . . . B 2 -25.389 -20.017 -18.604 1 38.81 ? FE HEM 501 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #