data_7QNV # _model_server_result.job_id aod2aB9fP9ZiXIYdEflh-A _model_server_result.datetime_utc '2024-11-09 01:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 7QNV # _exptl.entry_id 7QNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.109 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-methylbenzoselenoate _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.42 _cell.angle_gamma 90 _cell.entry_id 7QNV _cell.length_a 42.43 _cell.length_b 41.42 _cell.length_c 72.13 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 AAA HIS 94 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A NE2 HIS 96 AAA HIS 96 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc3 A ND1 HIS 119 AAA HIS 119 1_555 B ZN ZN . AAA ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? # _chem_comp.formula 'C8 H8 O Se' _chem_comp.formula_weight 199.109 _chem_comp.id E6H _chem_comp.mon_nstd_flag . _chem_comp.name 3-methylbenzoselenoate _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C5 E6H sing 83 n n C4 C5 E6H doub 84 n y C4 C3 E6H sing 85 n y C5 C7 E6H sing 86 n y C3 C2 E6H doub 87 n y C7 C1 E6H doub 88 n y C2 C1 E6H sing 89 n y C1 C E6H sing 90 n n C SE E6H sing 91 n n C O E6H doub 92 n n C2 H1 E6H sing 93 n n C4 H2 E6H sing 94 n n C6 H3 E6H sing 95 n n C6 H4 E6H sing 96 n n C6 H5 E6H sing 97 n n SE H6 E6H sing 98 n n C7 H7 E6H sing 99 n n C3 H8 E6H sing 100 n n # _atom_sites.entry_id 7QNV _atom_sites.fract_transf_matrix[1][1] 0.023568 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00606 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024143 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014315 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN AAA 1 301 1 ZN ZN . C 3 GOL AAA 1 302 1 GOL GOL . D 4 E6H AAA 1 303 1 E6H A35 . E 4 E6H AAA 1 304 2 E6H A35 . F 5 HOH AAA 1 401 240 HOH HOH . F 5 HOH AAA 2 402 225 HOH HOH . F 5 HOH AAA 3 403 64 HOH HOH . F 5 HOH AAA 4 404 160 HOH HOH . F 5 HOH AAA 5 405 203 HOH HOH . F 5 HOH AAA 6 406 197 HOH HOH . F 5 HOH AAA 7 407 243 HOH HOH . F 5 HOH AAA 8 408 126 HOH HOH . F 5 HOH AAA 9 409 217 HOH HOH . F 5 HOH AAA 10 410 110 HOH HOH . F 5 HOH AAA 11 411 180 HOH HOH . F 5 HOH AAA 12 412 81 HOH HOH . F 5 HOH AAA 13 413 46 HOH HOH . F 5 HOH AAA 14 414 124 HOH HOH . F 5 HOH AAA 15 415 100 HOH HOH . F 5 HOH AAA 16 416 186 HOH HOH . F 5 HOH AAA 17 417 7 HOH HOH . F 5 HOH AAA 18 418 44 HOH HOH . F 5 HOH AAA 19 419 32 HOH HOH . F 5 HOH AAA 20 420 238 HOH HOH . F 5 HOH AAA 21 421 104 HOH HOH . F 5 HOH AAA 22 422 205 HOH HOH . F 5 HOH AAA 23 423 117 HOH HOH . F 5 HOH AAA 24 424 33 HOH HOH . F 5 HOH AAA 25 425 53 HOH HOH . F 5 HOH AAA 26 426 82 HOH HOH . F 5 HOH AAA 27 427 224 HOH HOH . F 5 HOH AAA 28 428 130 HOH HOH . F 5 HOH AAA 29 429 141 HOH HOH . F 5 HOH AAA 30 430 214 HOH HOH . F 5 HOH AAA 31 431 196 HOH HOH . F 5 HOH AAA 32 432 164 HOH HOH . F 5 HOH AAA 33 433 245 HOH HOH . F 5 HOH AAA 34 434 39 HOH HOH . F 5 HOH AAA 35 435 174 HOH HOH . F 5 HOH AAA 36 436 163 HOH HOH . F 5 HOH AAA 37 437 25 HOH HOH . F 5 HOH AAA 38 438 34 HOH HOH . F 5 HOH AAA 39 439 170 HOH HOH . F 5 HOH AAA 40 440 138 HOH HOH . F 5 HOH AAA 41 441 11 HOH HOH . F 5 HOH AAA 42 442 113 HOH HOH . F 5 HOH AAA 43 443 97 HOH HOH . F 5 HOH AAA 44 444 20 HOH HOH . F 5 HOH AAA 45 445 166 HOH HOH . F 5 HOH AAA 46 446 185 HOH HOH . F 5 HOH AAA 47 447 63 HOH HOH . F 5 HOH AAA 48 448 123 HOH HOH . F 5 HOH AAA 49 449 54 HOH HOH . F 5 HOH AAA 50 450 136 HOH HOH . F 5 HOH AAA 51 451 106 HOH HOH . F 5 HOH AAA 52 452 56 HOH HOH . F 5 HOH AAA 53 453 202 HOH HOH . F 5 HOH AAA 54 454 37 HOH HOH . F 5 HOH AAA 55 455 10 HOH HOH . F 5 HOH AAA 56 456 73 HOH HOH . F 5 HOH AAA 57 457 66 HOH HOH . F 5 HOH AAA 58 458 179 HOH HOH . F 5 HOH AAA 59 459 62 HOH HOH . F 5 HOH AAA 60 460 14 HOH HOH . F 5 HOH AAA 61 461 76 HOH HOH . F 5 HOH AAA 62 462 159 HOH HOH . F 5 HOH AAA 63 463 5 HOH HOH . F 5 HOH AAA 64 464 155 HOH HOH . F 5 HOH AAA 65 465 193 HOH HOH . F 5 HOH AAA 66 466 169 HOH HOH . F 5 HOH AAA 67 467 40 HOH HOH . F 5 HOH AAA 68 468 211 HOH HOH . F 5 HOH AAA 69 469 48 HOH HOH . F 5 HOH AAA 70 470 118 HOH HOH . F 5 HOH AAA 71 471 78 HOH HOH . F 5 HOH AAA 72 472 13 HOH HOH . F 5 HOH AAA 73 473 99 HOH HOH . F 5 HOH AAA 74 474 6 HOH HOH . F 5 HOH AAA 75 475 12 HOH HOH . F 5 HOH AAA 76 476 91 HOH HOH . F 5 HOH AAA 77 477 19 HOH HOH . F 5 HOH AAA 78 478 215 HOH HOH . F 5 HOH AAA 79 479 157 HOH HOH . F 5 HOH AAA 80 480 143 HOH HOH . F 5 HOH AAA 81 481 144 HOH HOH . F 5 HOH AAA 82 482 107 HOH HOH . F 5 HOH AAA 83 483 8 HOH HOH . F 5 HOH AAA 84 484 109 HOH HOH . F 5 HOH AAA 85 485 125 HOH HOH . F 5 HOH AAA 86 486 41 HOH HOH . F 5 HOH AAA 87 487 69 HOH HOH . F 5 HOH AAA 88 488 3 HOH HOH . F 5 HOH AAA 89 489 199 HOH HOH . F 5 HOH AAA 90 490 231 HOH HOH . F 5 HOH AAA 91 491 21 HOH HOH . F 5 HOH AAA 92 492 23 HOH HOH . F 5 HOH AAA 93 493 35 HOH HOH . F 5 HOH AAA 94 494 70 HOH HOH . F 5 HOH AAA 95 495 51 HOH HOH . F 5 HOH AAA 96 496 50 HOH HOH . F 5 HOH AAA 97 497 71 HOH HOH . F 5 HOH AAA 98 498 94 HOH HOH . F 5 HOH AAA 99 499 96 HOH HOH . F 5 HOH AAA 100 500 150 HOH HOH . F 5 HOH AAA 101 501 4 HOH HOH . F 5 HOH AAA 102 502 177 HOH HOH . F 5 HOH AAA 103 503 29 HOH HOH . F 5 HOH AAA 104 504 229 HOH HOH . F 5 HOH AAA 105 505 58 HOH HOH . F 5 HOH AAA 106 506 16 HOH HOH . F 5 HOH AAA 107 507 36 HOH HOH . F 5 HOH AAA 108 508 149 HOH HOH . F 5 HOH AAA 109 509 92 HOH HOH . F 5 HOH AAA 110 510 85 HOH HOH . F 5 HOH AAA 111 511 24 HOH HOH . F 5 HOH AAA 112 512 42 HOH HOH . F 5 HOH AAA 113 513 45 HOH HOH . F 5 HOH AAA 114 514 59 HOH HOH . F 5 HOH AAA 115 515 87 HOH HOH . F 5 HOH AAA 116 516 145 HOH HOH . F 5 HOH AAA 117 517 195 HOH HOH . F 5 HOH AAA 118 518 27 HOH HOH . F 5 HOH AAA 119 519 15 HOH HOH . F 5 HOH AAA 120 520 18 HOH HOH . F 5 HOH AAA 121 521 57 HOH HOH . F 5 HOH AAA 122 522 112 HOH HOH . F 5 HOH AAA 123 523 156 HOH HOH . F 5 HOH AAA 124 524 161 HOH HOH . F 5 HOH AAA 125 525 178 HOH HOH . F 5 HOH AAA 126 526 154 HOH HOH . F 5 HOH AAA 127 527 139 HOH HOH . F 5 HOH AAA 128 528 55 HOH HOH . F 5 HOH AAA 129 529 152 HOH HOH . F 5 HOH AAA 130 530 60 HOH HOH . F 5 HOH AAA 131 531 165 HOH HOH . F 5 HOH AAA 132 532 75 HOH HOH . F 5 HOH AAA 133 533 146 HOH HOH . F 5 HOH AAA 134 534 122 HOH HOH . F 5 HOH AAA 135 535 79 HOH HOH . F 5 HOH AAA 136 536 89 HOH HOH . F 5 HOH AAA 137 537 28 HOH HOH . F 5 HOH AAA 138 538 38 HOH HOH . F 5 HOH AAA 139 539 93 HOH HOH . F 5 HOH AAA 140 540 84 HOH HOH . F 5 HOH AAA 141 541 208 HOH HOH . F 5 HOH AAA 142 542 134 HOH HOH . F 5 HOH AAA 143 543 83 HOH HOH . F 5 HOH AAA 144 544 31 HOH HOH . F 5 HOH AAA 145 545 115 HOH HOH . F 5 HOH AAA 146 546 30 HOH HOH . F 5 HOH AAA 147 547 148 HOH HOH . F 5 HOH AAA 148 548 129 HOH HOH . F 5 HOH AAA 149 549 242 HOH HOH . F 5 HOH AAA 150 550 105 HOH HOH . F 5 HOH AAA 151 551 9 HOH HOH . F 5 HOH AAA 152 552 151 HOH HOH . F 5 HOH AAA 153 553 80 HOH HOH . F 5 HOH AAA 154 554 74 HOH HOH . F 5 HOH AAA 155 555 140 HOH HOH . F 5 HOH AAA 156 556 173 HOH HOH . F 5 HOH AAA 157 557 114 HOH HOH . F 5 HOH AAA 158 558 120 HOH HOH . F 5 HOH AAA 159 559 119 HOH HOH . F 5 HOH AAA 160 560 103 HOH HOH . F 5 HOH AAA 161 561 158 HOH HOH . F 5 HOH AAA 162 562 220 HOH HOH . F 5 HOH AAA 163 563 108 HOH HOH . F 5 HOH AAA 164 564 237 HOH HOH . F 5 HOH AAA 165 565 65 HOH HOH . F 5 HOH AAA 166 566 176 HOH HOH . F 5 HOH AAA 167 567 142 HOH HOH . F 5 HOH AAA 168 568 234 HOH HOH . F 5 HOH AAA 169 569 72 HOH HOH . F 5 HOH AAA 170 570 227 HOH HOH . F 5 HOH AAA 171 571 210 HOH HOH . F 5 HOH AAA 172 572 102 HOH HOH . F 5 HOH AAA 173 573 86 HOH HOH . F 5 HOH AAA 174 574 201 HOH HOH . F 5 HOH AAA 175 575 101 HOH HOH . F 5 HOH AAA 176 576 17 HOH HOH . F 5 HOH AAA 177 577 236 HOH HOH . F 5 HOH AAA 178 578 22 HOH HOH . F 5 HOH AAA 179 579 77 HOH HOH . F 5 HOH AAA 180 580 43 HOH HOH . F 5 HOH AAA 181 581 116 HOH HOH . F 5 HOH AAA 182 582 49 HOH HOH . F 5 HOH AAA 183 583 226 HOH HOH . F 5 HOH AAA 184 584 88 HOH HOH . F 5 HOH AAA 185 585 233 HOH HOH . F 5 HOH AAA 186 586 171 HOH HOH . F 5 HOH AAA 187 587 228 HOH HOH . F 5 HOH AAA 188 588 241 HOH HOH . F 5 HOH AAA 189 589 204 HOH HOH . F 5 HOH AAA 190 590 206 HOH HOH . F 5 HOH AAA 191 591 222 HOH HOH . F 5 HOH AAA 192 592 90 HOH HOH . F 5 HOH AAA 193 593 167 HOH HOH . F 5 HOH AAA 194 594 26 HOH HOH . F 5 HOH AAA 195 595 162 HOH HOH . F 5 HOH AAA 196 596 183 HOH HOH . F 5 HOH AAA 197 597 181 HOH HOH . F 5 HOH AAA 198 598 218 HOH HOH . F 5 HOH AAA 199 599 216 HOH HOH . F 5 HOH AAA 200 600 213 HOH HOH . F 5 HOH AAA 201 601 198 HOH HOH . F 5 HOH AAA 202 602 128 HOH HOH . F 5 HOH AAA 203 603 137 HOH HOH . F 5 HOH AAA 204 604 188 HOH HOH . F 5 HOH AAA 205 605 219 HOH HOH . F 5 HOH AAA 206 606 131 HOH HOH . F 5 HOH AAA 207 607 168 HOH HOH . F 5 HOH AAA 208 608 68 HOH HOH . F 5 HOH AAA 209 609 200 HOH HOH . F 5 HOH AAA 210 610 135 HOH HOH . F 5 HOH AAA 211 611 172 HOH HOH . F 5 HOH AAA 212 612 187 HOH HOH . F 5 HOH AAA 213 613 209 HOH HOH . F 5 HOH AAA 214 614 223 HOH HOH . F 5 HOH AAA 215 615 98 HOH HOH . F 5 HOH AAA 216 616 239 HOH HOH . F 5 HOH AAA 217 617 230 HOH HOH . F 5 HOH AAA 218 618 182 HOH HOH . F 5 HOH AAA 219 619 67 HOH HOH . F 5 HOH AAA 220 620 175 HOH HOH . F 5 HOH AAA 221 621 184 HOH HOH . F 5 HOH AAA 222 622 212 HOH HOH . F 5 HOH AAA 223 623 95 HOH HOH . F 5 HOH AAA 224 624 52 HOH HOH . F 5 HOH AAA 225 625 61 HOH HOH . F 5 HOH AAA 226 626 244 HOH HOH . F 5 HOH AAA 227 627 153 HOH HOH . F 5 HOH AAA 228 628 194 HOH HOH . F 5 HOH AAA 229 629 111 HOH HOH . F 5 HOH AAA 230 630 221 HOH HOH . F 5 HOH AAA 231 631 232 HOH HOH . F 5 HOH AAA 232 632 207 HOH HOH . F 5 HOH AAA 233 633 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 E6H . . . E 4 -9.173 -11.838 -4.811 1 28.02 0 C2 E6H 304 AAA 1 HETATM 2 C C4 E6H . . . E 4 -7.447 -10.33 -4.106 1 23.84 0 C4 E6H 304 AAA 1 HETATM 3 C C5 E6H . . . E 4 -8.169 -10.002 -2.965 1 23.16 0 C5 E6H 304 AAA 1 HETATM 4 C C6 E6H . . . E 4 -7.57 -9.112 -1.911 1 21.28 0 C6 E6H 304 AAA 1 HETATM 5 O O E6H . . . E 4 -12.125 -11.554 -2.767 1 29.66 0 O E6H 304 AAA 1 HETATM 6 C C E6H . . . E 4 -11.296 -12.075 -3.454 1 28.58 0 C E6H 304 AAA 1 HETATM 7 SE SE E6H . . . E 4 -11.638 -13.798 -4.481 1 34.96 0 SE E6H 304 AAA 1 HETATM 8 C C1 E6H . . . E 4 -9.927 -11.514 -3.687 1 27.95 0 C1 E6H 304 AAA 1 HETATM 9 C C7 E6H . . . E 4 -9.422 -10.583 -2.782 1 25.07 0 C7 E6H 304 AAA 1 HETATM 10 C C3 E6H . . . E 4 -7.945 -11.241 -5.023 1 28.94 0 C3 E6H 304 AAA 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #