data_7QNW # _model_server_result.job_id Dy51ZMDU8N6xcT2zW_DuKw _model_server_result.datetime_utc '2024-11-21 08:58:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qnw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 7QNW # _exptl.entry_id 7QNW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7QNW _cell.length_a 131.966 _cell.length_b 131.966 _cell.length_c 117.338 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QNW _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 G N N ? 7 H N N ? 7 I N N ? 7 J N N ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 R N N # _pdbx_entity_branch.entity_id 6 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 6 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 6 n F NAG 1 C 1 NAG E 601 NAG 6 n F NAG 2 C 2 NAG E 701 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 148 H CYS 148 1_555 A SG CYS 204 H CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 135 L CYS 135 1_555 B SG CYS 195 L CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 10 E CYS 336 1_555 C SG CYS 35 E CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 C SG CYS 53 E CYS 379 1_555 C SG CYS 106 E CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 C SG CYS 65 E CYS 391 1_555 C SG CYS 199 E CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 C SG CYS 154 E CYS 480 1_555 C SG CYS 162 E CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 D SG CYS 22 A CYS 22 1_555 D SG CYS 97 A CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 D SG CYS 154 A CYS 154 1_555 D SG CYS 210 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 E SG CYS 23 B CYS 23 1_555 E SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf12 E SG CYS 135 B CYS 135 1_555 E SG CYS 195 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 C ND2 ASN 17 E ASN 343 1_555 F C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 F O4 NAG . C NAG 1 1_555 F C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 7QNW _atom_sites.fract_transf_matrix[1][1] 0.007578 _atom_sites.fract_transf_matrix[1][2] 0.004375 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00875 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008522 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 7 GOL L 1 301 301 GOL GOL . H 7 GOL L 1 302 301 GOL GOL . I 7 GOL L 1 303 401 GOL GOL . J 7 GOL E 1 801 801 GOL GOL . K 8 ACT E 1 802 901 ACT ACT . L 7 GOL A 1 301 301 GOL GOL . M 7 GOL A 1 302 501 GOL GOL . N 7 GOL A 1 303 601 GOL GOL . O 7 GOL A 1 304 701 GOL GOL . P 8 ACT A 1 305 301 ACT ACT . Q 9 CL A 1 306 1 CL CL . R 7 GOL B 1 401 401 GOL GOL . S 10 HOH H 1 301 64 HOH HOH . S 10 HOH H 2 302 99 HOH HOH . S 10 HOH H 3 303 37 HOH HOH . S 10 HOH H 4 304 30 HOH HOH . S 10 HOH H 5 305 71 HOH HOH . S 10 HOH H 6 306 49 HOH HOH . S 10 HOH H 7 307 50 HOH HOH . S 10 HOH H 8 308 100 HOH HOH . S 10 HOH H 9 309 29 HOH HOH . S 10 HOH H 10 310 51 HOH HOH . S 10 HOH H 11 311 93 HOH HOH . T 10 HOH L 1 401 53 HOH HOH . T 10 HOH L 2 402 58 HOH HOH . T 10 HOH L 3 403 19 HOH HOH . T 10 HOH L 4 404 57 HOH HOH . T 10 HOH L 5 405 76 HOH HOH . T 10 HOH L 6 406 56 HOH HOH . T 10 HOH L 7 407 48 HOH HOH . T 10 HOH L 8 408 26 HOH HOH . T 10 HOH L 9 409 23 HOH HOH . T 10 HOH L 10 410 60 HOH HOH . T 10 HOH L 11 411 90 HOH HOH . T 10 HOH L 12 412 96 HOH HOH . T 10 HOH L 13 413 91 HOH HOH . U 10 HOH E 1 901 94 HOH HOH . U 10 HOH E 2 902 59 HOH HOH . U 10 HOH E 3 903 8 HOH HOH . U 10 HOH E 4 904 10 HOH HOH . U 10 HOH E 5 905 54 HOH HOH . U 10 HOH E 6 906 92 HOH HOH . U 10 HOH E 7 907 69 HOH HOH . U 10 HOH E 8 908 86 HOH HOH . U 10 HOH E 9 909 15 HOH HOH . U 10 HOH E 10 910 12 HOH HOH . U 10 HOH E 11 911 67 HOH HOH . U 10 HOH E 12 912 5 HOH HOH . U 10 HOH E 13 913 97 HOH HOH . U 10 HOH E 14 914 70 HOH HOH . U 10 HOH E 15 915 79 HOH HOH . U 10 HOH E 16 916 73 HOH HOH . U 10 HOH E 17 917 27 HOH HOH . U 10 HOH E 18 918 75 HOH HOH . U 10 HOH E 19 919 21 HOH HOH . U 10 HOH E 20 920 83 HOH HOH . U 10 HOH E 21 921 36 HOH HOH . U 10 HOH E 22 922 45 HOH HOH . U 10 HOH E 23 923 39 HOH HOH . U 10 HOH E 24 924 72 HOH HOH . U 10 HOH E 25 925 74 HOH HOH . U 10 HOH E 26 926 33 HOH HOH . V 10 HOH A 1 401 1 HOH HOH . V 10 HOH A 2 402 9 HOH HOH . V 10 HOH A 3 403 4 HOH HOH . V 10 HOH A 4 404 55 HOH HOH . V 10 HOH A 5 405 42 HOH HOH . V 10 HOH A 6 406 25 HOH HOH . V 10 HOH A 7 407 62 HOH HOH . V 10 HOH A 8 408 2 HOH HOH . V 10 HOH A 9 409 7 HOH HOH . V 10 HOH A 10 410 11 HOH HOH . V 10 HOH A 11 411 52 HOH HOH . V 10 HOH A 12 412 43 HOH HOH . V 10 HOH A 13 413 78 HOH HOH . V 10 HOH A 14 414 65 HOH HOH . V 10 HOH A 15 415 81 HOH HOH . V 10 HOH A 16 416 47 HOH HOH . V 10 HOH A 17 417 44 HOH HOH . V 10 HOH A 18 418 20 HOH HOH . V 10 HOH A 19 419 34 HOH HOH . V 10 HOH A 20 420 28 HOH HOH . V 10 HOH A 21 421 87 HOH HOH . V 10 HOH A 22 422 16 HOH HOH . V 10 HOH A 23 423 63 HOH HOH . V 10 HOH A 24 424 17 HOH HOH . V 10 HOH A 25 425 101 HOH HOH . V 10 HOH A 26 426 98 HOH HOH . V 10 HOH A 27 427 82 HOH HOH . V 10 HOH A 28 428 102 HOH HOH . V 10 HOH A 29 429 38 HOH HOH . W 10 HOH B 1 501 31 HOH HOH . W 10 HOH B 2 502 95 HOH HOH . W 10 HOH B 3 503 22 HOH HOH . W 10 HOH B 4 504 85 HOH HOH . W 10 HOH B 5 505 6 HOH HOH . W 10 HOH B 6 506 68 HOH HOH . W 10 HOH B 7 507 3 HOH HOH . W 10 HOH B 8 508 24 HOH HOH . W 10 HOH B 9 509 14 HOH HOH . W 10 HOH B 10 510 32 HOH HOH . W 10 HOH B 11 511 35 HOH HOH . W 10 HOH B 12 512 13 HOH HOH . W 10 HOH B 13 513 46 HOH HOH . W 10 HOH B 14 514 84 HOH HOH . W 10 HOH B 15 515 18 HOH HOH . W 10 HOH B 16 516 61 HOH HOH . W 10 HOH B 17 517 77 HOH HOH . W 10 HOH B 18 518 80 HOH HOH . W 10 HOH B 19 519 41 HOH HOH . W 10 HOH B 20 520 88 HOH HOH . W 10 HOH B 21 521 40 HOH HOH . W 10 HOH B 22 522 66 HOH HOH . W 10 HOH B 23 523 89 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 7 -64.486 -14.972 -22.668 1 66.63 ? C1 GOL 301 L 1 HETATM 2 O O1 GOL . . . G 7 -65.243 -16.147 -22.714 1 67.36 ? O1 GOL 301 L 1 HETATM 3 C C2 GOL . . . G 7 -65.445 -13.811 -23.02 1 71.63 ? C2 GOL 301 L 1 HETATM 4 O O2 GOL . . . G 7 -65.944 -13.927 -24.312 1 74.39 ? O2 GOL 301 L 1 HETATM 5 C C3 GOL . . . G 7 -66.563 -13.888 -21.949 1 62.64 ? C3 GOL 301 L 1 HETATM 6 O O3 GOL . . . G 7 -67.222 -12.661 -21.955 1 70.88 ? O3 GOL 301 L 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 437 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #