data_7QO4
#
_model_server_result.job_id            RZGt1AB2-WwI1GAB6mn21Q 
_model_server_result.datetime_utc      '2024-12-26 19:37:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qo4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":501}' 
#
_entry.id    7QO4 
#
_exptl.entry_id    7QO4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QO4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QO4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 J N N 
? 10 L N N 
? 10 N N N 
? 10 P N N 
? 10 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 I C GLY 75 9 GLY 75 1_555 I N GLZ 76 9 GLZ 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
metalc ? metalc1 B OE1 GLU 310 H GLU 310 1_555 K MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc2 L O2G ATP . I ATP 501 1_555 M MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.815 ? 
metalc ? metalc3 L O3B ATP . I ATP 501 1_555 M MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? 
metalc ? metalc4 D OE1 GLU 273 K GLU 273 1_555 O MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc5 P O1G ATP . L ATP 501 1_555 Q MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc6 P O3B ATP . L ATP 501 1_555 Q MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? 
metalc ? metalc7 F OG1 THR 229 M THR 229 1_555 S MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc8 F OD1 ASP 281 M ASP 281 1_555 S MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? 
metalc ? metalc9 R O1G ATP . M ATP 501 1_555 S MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc10 R O2G ATP . M ATP 501 1_555 S MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? 
metalc ? metalc11 R O2B ATP . M ATP 501 1_555 S MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? 
metalc ? metalc12 T O3B ADP . J ADP 501 1_555 U MG MG . J MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? 
metalc ? metalc13 T O2A ADP . J ADP 501 1_555 U MG MG . J MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     7QO4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 10 ATP H 1 501 501 ATP ATP . 
K 11 MG H 1 502 502 MG MG . 
L 10 ATP I 1 501 501 ATP ATP . 
M 11 MG I 1 502 502 MG MG . 
N 10 ATP K 1 501 501 ATP ATP . 
O 11 MG K 1 502 502 MG MG . 
P 10 ATP L 1 501 501 ATP ATP . 
Q 11 MG L 1 502 502 MG MG . 
R 10 ATP M 1 501 501 ATP ATP . 
S 11 MG M 1 502 502 MG MG . 
T 12 ADP J 1 501 501 ADP ADP . 
U 11 MG J 1 503 503 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . N 10 165.7 295.793 284.921 1 0 ? PG ATP 501 K 1 
HETATM 2 O O1G ATP . . . N 10 164.49 294.971 285.297 1 0 ? O1G ATP 501 K 1 
HETATM 3 O O2G ATP . . . N 10 165.566 296.44 283.572 1 0 ? O2G ATP 501 K 1 
HETATM 4 O O3G ATP . . . N 10 166.983 295.015 285.079 1 0 ? O3G ATP 501 K 1 
HETATM 5 P PB ATP . . . N 10 166.215 298.498 286.08 1 0 ? PB ATP 501 K 1 
HETATM 6 O O1B ATP . . . N 10 167.713 298.486 285.928 1 0 ? O1B ATP 501 K 1 
HETATM 7 O O2B ATP . . . N 10 165.443 299.356 285.117 1 0 ? O2B ATP 501 K 1 
HETATM 8 O O3B ATP . . . N 10 165.696 296.957 286.064 1 0 ? O3B ATP 501 K 1 
HETATM 9 P PA ATP . . . N 10 164.623 299.383 288.475 1 0 ? PA ATP 501 K 1 
HETATM 10 O O1A ATP . . . N 10 164.091 300.735 288.06 1 0 ? O1A ATP 501 K 1 
HETATM 11 O O2A ATP . . . N 10 163.664 298.217 288.54 1 0 ? O2A ATP 501 K 1 
HETATM 12 O O3A ATP . . . N 10 165.959 299.027 287.604 1 0 ? O3A ATP 501 K 1 
HETATM 13 O O5' ATP . . . N 10 165.154 299.607 289.995 1 0 ? O5' ATP 501 K 1 
HETATM 14 C C5' ATP . . . N 10 164.801 298.707 291.064 1 0 ? C5' ATP 501 K 1 
HETATM 15 C C4' ATP . . . N 10 165.266 299.151 292.463 1 0 ? C4' ATP 501 K 1 
HETATM 16 O O4' ATP . . . N 10 166.687 299.35 292.483 1 0 ? O4' ATP 501 K 1 
HETATM 17 C C3' ATP . . . N 10 164.618 300.437 292.956 1 0 ? C3' ATP 501 K 1 
HETATM 18 O O3' ATP . . . N 10 164.377 300.351 294.37 1 0 ? O3' ATP 501 K 1 
HETATM 19 C C2' ATP . . . N 10 165.676 301.464 292.592 1 0 ? C2' ATP 501 K 1 
HETATM 20 O O2' ATP . . . N 10 165.561 302.644 293.388 1 0 ? O2' ATP 501 K 1 
HETATM 21 C C1' ATP . . . N 10 166.995 300.719 292.743 1 0 ? C1' ATP 501 K 1 
HETATM 22 N N9 ATP . . . N 10 168.055 301.137 291.785 1 0 ? N9 ATP 501 K 1 
HETATM 23 C C8 ATP . . . N 10 168.158 300.814 290.479 1 0 ? C8 ATP 501 K 1 
HETATM 24 N N7 ATP . . . N 10 169.264 301.359 289.922 1 0 ? N7 ATP 501 K 1 
HETATM 25 C C5 ATP . . . N 10 169.892 302.039 290.884 1 0 ? C5 ATP 501 K 1 
HETATM 26 C C6 ATP . . . N 10 171.114 302.847 290.967 1 0 ? C6 ATP 501 K 1 
HETATM 27 N N6 ATP . . . N 10 171.881 303.015 289.878 1 0 ? N6 ATP 501 K 1 
HETATM 28 N N1 ATP . . . N 10 171.416 303.392 292.155 1 0 ? N1 ATP 501 K 1 
HETATM 29 C C2 ATP . . . N 10 170.635 303.203 293.231 1 0 ? C2 ATP 501 K 1 
HETATM 30 N N3 ATP . . . N 10 169.508 302.482 293.23 1 0 ? N3 ATP 501 K 1 
HETATM 31 C C4 ATP . . . N 10 169.097 301.886 292.102 1 0 ? C4 ATP 501 K 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           31 
#