data_7QO5 # _model_server_result.job_id yG6qd2y0CQOAkoGOCasf-g _model_server_result.datetime_utc '2024-12-26 18:18:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qo5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HB","auth_seq_id":501}' # _entry.id 7QO5 # _exptl.entry_id 7QO5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 38 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QO5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 49-meric _pdbx_struct_assembly.oligomeric_count 49 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 38 _struct_asym.id HB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 WA C GLY 75 9 GLY 75 1_555 WA N GLZ 76 9 GLZ 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 PA OE1 GLU 310 H GLU 310 1_555 YA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc2 PA OD2 ASP 341 H ASP 341 1_555 GB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 XA O2G ATP . H ATP 501 1_555 YA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc4 QA OG1 THR 230 I THR 230 1_555 AB MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 ZA O2G ATP . I ATP 501 1_555 AB MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 ZA O2A ATP . I ATP 501 1_555 AB MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc7 RA OG1 THR 220 K THR 220 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc8 BB O1G ATP . K ATP 501 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc9 BB O3B ATP . K ATP 501 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc10 BB O2A ATP . K ATP 501 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc11 BB O3A ATP . K ATP 501 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc12 SA OG1 THR 229 L THR 229 1_555 EB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc13 DB O2G ATP . L ATP 501 1_555 EB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc14 DB O2B ATP . L ATP 501 1_555 EB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc15 DB O1A ATP . L ATP 501 1_555 EB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc16 TA OG1 THR 229 M THR 229 1_555 GB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc17 UA OD2 ASP 248 J ASP 248 1_555 IB MG MG . J MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7QO5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code XA 36 ATP H 1 501 501 ATP ATP . YA 37 MG H 1 502 502 MG MG . ZA 36 ATP I 1 501 501 ATP ATP . AB 37 MG I 1 502 502 MG MG . BB 36 ATP K 1 501 501 ATP ATP . CB 37 MG K 1 502 502 MG MG . DB 36 ATP L 1 501 501 ATP ATP . EB 37 MG L 1 502 502 MG MG . FB 36 ATP M 1 501 501 ATP ATP . GB 37 MG M 1 502 502 MG MG . HB 38 ADP J 1 501 501 ADP ADP . IB 37 MG J 1 503 503 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . HB 38 169.162 304.126 252.899 1 0 ? PB ADP 501 J 1 HETATM 2 O O1B ADP . . . HB 38 170.414 303.982 251.977 1 0 ? O1B ADP 501 J 1 HETATM 3 O O2B ADP . . . HB 38 169.082 303.196 254.106 1 0 ? O2B ADP 501 J 1 HETATM 4 O O3B ADP . . . HB 38 167.842 304.224 252.152 1 0 ? O3B ADP 501 J 1 HETATM 5 P PA ADP . . . HB 38 168.24 306.706 254.386 1 0 ? PA ADP 501 J 1 HETATM 6 O O1A ADP . . . HB 38 167.057 307.17 253.601 1 0 ? O1A ADP 501 J 1 HETATM 7 O O2A ADP . . . HB 38 167.964 306.101 255.717 1 0 ? O2A ADP 501 J 1 HETATM 8 O O3A ADP . . . HB 38 169.281 305.762 253.507 1 0 ? O3A ADP 501 J 1 HETATM 9 O O5' ADP . . . HB 38 169.126 308.039 254.602 1 0 ? O5' ADP 501 J 1 HETATM 10 C C5' ADP . . . HB 38 169.158 308.763 255.862 1 0 ? C5' ADP 501 J 1 HETATM 11 C C4' ADP . . . HB 38 168.763 310.204 255.815 1 0 ? C4' ADP 501 J 1 HETATM 12 O O4' ADP . . . HB 38 169.65 310.944 255.108 1 0 ? O4' ADP 501 J 1 HETATM 13 C C3' ADP . . . HB 38 167.369 310.486 255.12 1 0 ? C3' ADP 501 J 1 HETATM 14 O O3' ADP . . . HB 38 166.189 310.345 255.911 1 0 ? O3' ADP 501 J 1 HETATM 15 C C2' ADP . . . HB 38 167.566 311.87 254.51 1 0 ? C2' ADP 501 J 1 HETATM 16 O O2' ADP . . . HB 38 167.196 312.882 255.299 1 0 ? O2' ADP 501 J 1 HETATM 17 C C1' ADP . . . HB 38 169.074 311.943 254.282 1 0 ? C1' ADP 501 J 1 HETATM 18 N N9 ADP . . . HB 38 169.443 311.609 252.858 1 0 ? N9 ADP 501 J 1 HETATM 19 C C8 ADP . . . HB 38 169.915 310.401 252.371 1 0 ? C8 ADP 501 J 1 HETATM 20 N N7 ADP . . . HB 38 170.204 310.411 251.079 1 0 ? N7 ADP 501 J 1 HETATM 21 C C5 ADP . . . HB 38 169.856 311.699 250.647 1 0 ? C5 ADP 501 J 1 HETATM 22 C C6 ADP . . . HB 38 170.001 312.365 249.399 1 0 ? C6 ADP 501 J 1 HETATM 23 N N6 ADP . . . HB 38 170.513 311.819 248.245 1 0 ? N6 ADP 501 J 1 HETATM 24 N N1 ADP . . . HB 38 169.443 313.636 249.329 1 0 ? N1 ADP 501 J 1 HETATM 25 C C2 ADP . . . HB 38 168.851 314.217 250.441 1 0 ? C2 ADP 501 J 1 HETATM 26 N N3 ADP . . . HB 38 168.799 313.656 251.705 1 0 ? N3 ADP 501 J 1 HETATM 27 C C4 ADP . . . HB 38 169.284 312.431 251.746 1 0 ? C4 ADP 501 J 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 401 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #