data_7QO5 # _model_server_result.job_id buv8IhXGijgZRJG8Qb54tw _model_server_result.datetime_utc '2024-12-26 18:48:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qo5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XA","auth_seq_id":501}' # _entry.id 7QO5 # _exptl.entry_id 7QO5 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 36 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QO5 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QO5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 49-meric _pdbx_struct_assembly.oligomeric_count 49 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 36 XA N N ? 36 ZA N N ? 36 BB N N ? 36 DB N N ? 36 FB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 WA C GLY 75 9 GLY 75 1_555 WA N GLZ 76 9 GLZ 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? metalc ? metalc1 PA OE1 GLU 310 H GLU 310 1_555 YA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.856 ? metalc ? metalc2 PA OD2 ASP 341 H ASP 341 1_555 GB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 XA O2G ATP . H ATP 501 1_555 YA MG MG . H MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc4 QA OG1 THR 230 I THR 230 1_555 AB MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc5 ZA O2G ATP . I ATP 501 1_555 AB MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 ZA O2A ATP . I ATP 501 1_555 AB MG MG . I MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.936 ? metalc ? metalc7 RA OG1 THR 220 K THR 220 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc8 BB O1G ATP . K ATP 501 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc9 BB O3B ATP . K ATP 501 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc10 BB O2A ATP . K ATP 501 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? metalc ? metalc11 BB O3A ATP . K ATP 501 1_555 CB MG MG . K MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.598 ? metalc ? metalc12 SA OG1 THR 229 L THR 229 1_555 EB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc13 DB O2G ATP . L ATP 501 1_555 EB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc14 DB O2B ATP . L ATP 501 1_555 EB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc15 DB O1A ATP . L ATP 501 1_555 EB MG MG . L MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc16 TA OG1 THR 229 M THR 229 1_555 GB MG MG . M MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc17 UA OD2 ASP 248 J ASP 248 1_555 IB MG MG . J MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7QO5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code XA 36 ATP H 1 501 501 ATP ATP . YA 37 MG H 1 502 502 MG MG . ZA 36 ATP I 1 501 501 ATP ATP . AB 37 MG I 1 502 502 MG MG . BB 36 ATP K 1 501 501 ATP ATP . CB 37 MG K 1 502 502 MG MG . DB 36 ATP L 1 501 501 ATP ATP . EB 37 MG L 1 502 502 MG MG . FB 36 ATP M 1 501 501 ATP ATP . GB 37 MG M 1 502 502 MG MG . HB 38 ADP J 1 501 501 ADP ADP . IB 37 MG J 1 503 503 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . XA 36 166.74 252.051 248.248 1 0 ? PG ATP 501 H 1 HETATM 2 O O1G ATP . . . XA 36 167.115 252.817 246.994 1 0 ? O1G ATP 501 H 1 HETATM 3 O O2G ATP . . . XA 36 165.427 252.384 248.871 1 0 ? O2G ATP 501 H 1 HETATM 4 O O3G ATP . . . XA 36 167.783 251.906 249.296 1 0 ? O3G ATP 501 H 1 HETATM 5 P PB ATP . . . XA 36 165.366 249.395 247.438 1 0 ? PB ATP 501 H 1 HETATM 6 O O1B ATP . . . XA 36 166.006 248.151 246.944 1 0 ? O1B ATP 501 H 1 HETATM 7 O O2B ATP . . . XA 36 164.512 249.474 248.664 1 0 ? O2B ATP 501 H 1 HETATM 8 O O3B ATP . . . XA 36 166.549 250.499 247.567 1 0 ? O3B ATP 501 H 1 HETATM 9 P PA ATP . . . XA 36 162.901 249.947 245.429 1 0 ? PA ATP 501 H 1 HETATM 10 O O1A ATP . . . XA 36 161.959 251.035 245.973 1 0 ? O1A ATP 501 H 1 HETATM 11 O O2A ATP . . . XA 36 162.37 248.549 245.153 1 0 ? O2A ATP 501 H 1 HETATM 12 O O3A ATP . . . XA 36 164.38 249.98 246.271 1 0 ? O3A ATP 501 H 1 HETATM 13 O O5' ATP . . . XA 36 163.234 250.375 243.872 1 0 ? O5' ATP 501 H 1 HETATM 14 C C5' ATP . . . XA 36 162.335 251.228 243.163 1 0 ? C5' ATP 501 H 1 HETATM 15 C C4' ATP . . . XA 36 162.126 250.57 241.767 1 0 ? C4' ATP 501 H 1 HETATM 16 O O4' ATP . . . XA 36 163.365 250.06 241.224 1 0 ? O4' ATP 501 H 1 HETATM 17 C C3' ATP . . . XA 36 161.214 249.353 241.695 1 0 ? C3' ATP 501 H 1 HETATM 18 O O3' ATP . . . XA 36 159.865 249.72 241.839 1 0 ? O3' ATP 501 H 1 HETATM 19 C C2' ATP . . . XA 36 161.53 248.796 240.335 1 0 ? C2' ATP 501 H 1 HETATM 20 O O2' ATP . . . XA 36 161.003 249.527 239.241 1 0 ? O2' ATP 501 H 1 HETATM 21 C C1' ATP . . . XA 36 163.091 249.068 240.261 1 0 ? C1' ATP 501 H 1 HETATM 22 N N9 ATP . . . XA 36 163.84 247.839 240.603 1 0 ? N9 ATP 501 H 1 HETATM 23 C C8 ATP . . . XA 36 164.806 247.679 241.527 1 0 ? C8 ATP 501 H 1 HETATM 24 N N7 ATP . . . XA 36 165.26 246.452 241.546 1 0 ? N7 ATP 501 H 1 HETATM 25 C C5 ATP . . . XA 36 164.645 245.77 240.615 1 0 ? C5 ATP 501 H 1 HETATM 26 C C6 ATP . . . XA 36 164.813 244.45 240.204 1 0 ? C6 ATP 501 H 1 HETATM 27 N N6 ATP . . . XA 36 165.707 243.56 240.727 1 0 ? N6 ATP 501 H 1 HETATM 28 N N1 ATP . . . XA 36 163.857 244.028 239.26 1 0 ? N1 ATP 501 H 1 HETATM 29 C C2 ATP . . . XA 36 163.048 244.935 238.663 1 0 ? C2 ATP 501 H 1 HETATM 30 N N3 ATP . . . XA 36 162.976 246.204 238.96 1 0 ? N3 ATP 501 H 1 HETATM 31 C C4 ATP . . . XA 36 163.726 246.62 240.023 1 0 ? C4 ATP 501 H 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 509 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 31 #