data_7QOA # _model_server_result.job_id gNGm25FnK9jM-JfTMttW1Q _model_server_result.datetime_utc '2024-11-09 02:19:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qoa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 7QOA # _exptl.entry_id 7QOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 111.102 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-AMINOPYRIMIDIN-2(1H)-ONE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QOA _cell.length_a 108.246 _cell.length_b 209.027 _cell.length_c 102.452 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 29 A GLY 29 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 A O PHE 32 A PHE 32 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 A O ASN 275 A ASN 275 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 A OG1 THR 278 A THR 278 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 A OG1 THR 279 A THR 279 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B O GLY 29 B GLY 29 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc7 B O PHE 32 B PHE 32 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc8 B O ASN 275 B ASN 275 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc9 B OG1 THR 278 B THR 278 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 B OG1 THR 279 B THR 279 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'C4 H5 N3 O' _chem_comp.formula_weight 111.102 _chem_comp.id CYT _chem_comp.mon_nstd_flag . _chem_comp.name 6-AMINOPYRIMIDIN-2(1H)-ONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CYTOSINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 CYT sing 147 n y N3 C2 CYT sing 148 n y N3 HN3 CYT sing 149 n n C4 N4 CYT sing 150 n n C4 C5 CYT doub 151 n y N1 C2 CYT sing 152 n y N1 C6 CYT doub 153 n y C2 O2 CYT doub 154 n n N4 HN41 CYT sing 155 n n N4 HN42 CYT sing 156 n n C5 C6 CYT sing 157 n y C5 H5 CYT sing 158 n n C6 H6 CYT sing 159 n n # _atom_sites.entry_id 7QOA _atom_sites.fract_transf_matrix[1][1] 0.009238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYT A 1 501 501 CYT CYT . D 3 PEF A 1 502 701 PEF PEF . E 4 LMT A 1 503 1201 LMT LMT . F 5 A6L A 1 504 1202 A6L A6L . G 5 A6L A 1 505 1203 A6L A6L . H 6 NA A 1 506 1 NA NA . I 2 CYT B 1 501 501 CYT CYT . J 5 A6L B 1 502 502 A6L A6L . K 5 A6L B 1 503 503 A6L A6L . L 5 A6L B 1 504 504 A6L A6L . M 6 NA B 1 505 2 NA NA . N 7 HOH A 1 601 33 HOH HOH . N 7 HOH A 2 602 59 HOH HOH . N 7 HOH A 3 603 58 HOH HOH . N 7 HOH A 4 604 1 HOH HOH . N 7 HOH A 5 605 17 HOH HOH . N 7 HOH A 6 606 4 HOH HOH . N 7 HOH A 7 607 36 HOH HOH . N 7 HOH A 8 608 56 HOH HOH . N 7 HOH A 9 609 63 HOH HOH . N 7 HOH A 10 610 83 HOH HOH . N 7 HOH A 11 611 92 HOH HOH . N 7 HOH A 12 612 20 HOH HOH . N 7 HOH A 13 613 81 HOH HOH . N 7 HOH A 14 614 85 HOH HOH . N 7 HOH A 15 615 9 HOH HOH . N 7 HOH A 16 616 60 HOH HOH . N 7 HOH A 17 617 10 HOH HOH . N 7 HOH A 18 618 25 HOH HOH . N 7 HOH A 19 619 6 HOH HOH . N 7 HOH A 20 620 35 HOH HOH . N 7 HOH A 21 621 62 HOH HOH . N 7 HOH A 22 622 8 HOH HOH . N 7 HOH A 23 623 27 HOH HOH . N 7 HOH A 24 624 23 HOH HOH . N 7 HOH A 25 625 19 HOH HOH . N 7 HOH A 26 626 18 HOH HOH . N 7 HOH A 27 627 64 HOH HOH . N 7 HOH A 28 628 31 HOH HOH . N 7 HOH A 29 629 82 HOH HOH . N 7 HOH A 30 630 41 HOH HOH . N 7 HOH A 31 631 93 HOH HOH . N 7 HOH A 32 632 57 HOH HOH . N 7 HOH A 33 633 61 HOH HOH . N 7 HOH A 34 634 65 HOH HOH . N 7 HOH A 35 635 32 HOH HOH . N 7 HOH A 36 636 54 HOH HOH . O 7 HOH B 1 601 77 HOH HOH . O 7 HOH B 2 602 69 HOH HOH . O 7 HOH B 3 603 12 HOH HOH . O 7 HOH B 4 604 46 HOH HOH . O 7 HOH B 5 605 48 HOH HOH . O 7 HOH B 6 606 34 HOH HOH . O 7 HOH B 7 607 68 HOH HOH . O 7 HOH B 8 608 71 HOH HOH . O 7 HOH B 9 609 67 HOH HOH . O 7 HOH B 10 610 16 HOH HOH . O 7 HOH B 11 611 30 HOH HOH . O 7 HOH B 12 612 26 HOH HOH . O 7 HOH B 13 613 79 HOH HOH . O 7 HOH B 14 614 15 HOH HOH . O 7 HOH B 15 615 70 HOH HOH . O 7 HOH B 16 616 66 HOH HOH . O 7 HOH B 17 617 73 HOH HOH . O 7 HOH B 18 618 47 HOH HOH . O 7 HOH B 19 619 50 HOH HOH . O 7 HOH B 20 620 11 HOH HOH . O 7 HOH B 21 621 89 HOH HOH . O 7 HOH B 22 622 90 HOH HOH . O 7 HOH B 23 623 91 HOH HOH . O 7 HOH B 24 624 45 HOH HOH . O 7 HOH B 25 625 78 HOH HOH . O 7 HOH B 26 626 7 HOH HOH . O 7 HOH B 27 627 87 HOH HOH . O 7 HOH B 28 628 86 HOH HOH . O 7 HOH B 29 629 74 HOH HOH . O 7 HOH B 30 630 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 CYT . . . I 2 -29.58 -22.871 -27.077 1 52.69 ? N3 CYT 501 B 1 HETATM 2 C C4 CYT . . . I 2 -28.747 -22.137 -26.317 1 52.65 ? C4 CYT 501 B 1 HETATM 3 N N1 CYT . . . I 2 -31.37 -21.43 -26.402 1 48.56 ? N1 CYT 501 B 1 HETATM 4 C C2 CYT . . . I 2 -30.906 -22.548 -27.138 1 51.69 ? C2 CYT 501 B 1 HETATM 5 O O2 CYT . . . I 2 -31.711 -23.2 -27.835 1 48.23 ? O2 CYT 501 B 1 HETATM 6 N N4 CYT . . . I 2 -27.451 -22.488 -26.284 1 46.46 ? N4 CYT 501 B 1 HETATM 7 C C5 CYT . . . I 2 -29.212 -21.015 -25.555 1 47.13 ? C5 CYT 501 B 1 HETATM 8 C C6 CYT . . . I 2 -30.514 -20.706 -25.626 1 45.09 ? C6 CYT 501 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 8 #