data_7QOA
#
_model_server_result.job_id            h3gDSJMKc2VwyZhSNc90EQ 
_model_server_result.datetime_utc      '2024-11-09 01:52:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qoa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    7QOA 
#
_exptl.entry_id    7QOA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              691.959 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QOA 
_cell.length_a            108.246 
_cell.length_b            209.027 
_cell.length_c            102.452 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QOA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,N 1 1 
B,I,J,K,L,M,O 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 29 A GLY 29 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc2 A O PHE 32 A PHE 32 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc3 A O ASN 275 A ASN 275 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc4 A OG1 THR 278 A THR 278 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc5 A OG1 THR 279 A THR 279 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc6 B O GLY 29 B GLY 29 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc7 B O PHE 32 B PHE 32 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? 
metalc ? metalc8 B O ASN 275 B ASN 275 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc9 B OG1 THR 278 B THR 278 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc10 B OG1 THR 279 B THR 279 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
#
_chem_comp.formula           'C37 H74 N O8 P' 
_chem_comp.formula_weight    691.959 
_chem_comp.id                PEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 PEF sing 396 n n 
C2 C3 PEF sing 397 n n 
C2 O2 PEF sing 398 n n 
C2 H21 PEF sing 399 n n 
C1 O3P PEF sing 400 n n 
C1 H11 PEF sing 401 n n 
C1 H12 PEF sing 402 n n 
N C5 PEF sing 403 n n 
N HN1 PEF sing 404 n n 
N HN2 PEF sing 405 n n 
C3 O3 PEF sing 406 n n 
C3 H31 PEF sing 407 n n 
C3 H32 PEF sing 408 n n 
C4 C5 PEF sing 409 n n 
C4 O4P PEF sing 410 n n 
C4 H41 PEF sing 411 n n 
C4 H42 PEF sing 412 n n 
C5 H51 PEF sing 413 n n 
C5 H52 PEF sing 414 n n 
C10 C11 PEF sing 415 n n 
C10 O4 PEF doub 416 n n 
C10 O2 PEF sing 417 n n 
C11 C12 PEF sing 418 n n 
C11 H112 PEF sing 419 n n 
C11 H111 PEF sing 420 n n 
C12 C13 PEF sing 421 n n 
C12 H122 PEF sing 422 n n 
C12 H121 PEF sing 423 n n 
C13 C14 PEF sing 424 n n 
C13 H132 PEF sing 425 n n 
C13 H131 PEF sing 426 n n 
C14 C15 PEF sing 427 n n 
C14 H142 PEF sing 428 n n 
C14 H141 PEF sing 429 n n 
C15 C16 PEF sing 430 n n 
C15 H152 PEF sing 431 n n 
C15 H151 PEF sing 432 n n 
C16 C17 PEF sing 433 n n 
C16 H162 PEF sing 434 n n 
C16 H161 PEF sing 435 n n 
C17 C18 PEF sing 436 n n 
C17 H172 PEF sing 437 n n 
C17 H171 PEF sing 438 n n 
C18 C19 PEF sing 439 n n 
C18 H182 PEF sing 440 n n 
C18 H181 PEF sing 441 n n 
C19 C20 PEF sing 442 n n 
C19 H192 PEF sing 443 n n 
C19 H191 PEF sing 444 n n 
C20 C21 PEF sing 445 n n 
C20 H202 PEF sing 446 n n 
C20 H201 PEF sing 447 n n 
C21 C22 PEF sing 448 n n 
C21 H212 PEF sing 449 n n 
C21 H211 PEF sing 450 n n 
C22 C23 PEF sing 451 n n 
C22 H222 PEF sing 452 n n 
C22 H221 PEF sing 453 n n 
C23 C24 PEF sing 454 n n 
C23 H232 PEF sing 455 n n 
C23 H231 PEF sing 456 n n 
C24 C25 PEF sing 457 n n 
C24 H242 PEF sing 458 n n 
C24 H241 PEF sing 459 n n 
C25 H252 PEF sing 460 n n 
C25 H251 PEF sing 461 n n 
C25 H253 PEF sing 462 n n 
C30 C31 PEF sing 463 n n 
C30 O5 PEF doub 464 n n 
C30 O3 PEF sing 465 n n 
C31 C32 PEF sing 466 n n 
C31 H312 PEF sing 467 n n 
C31 H311 PEF sing 468 n n 
C32 C33 PEF sing 469 n n 
C32 H322 PEF sing 470 n n 
C32 H321 PEF sing 471 n n 
C33 C34 PEF sing 472 n n 
C33 H332 PEF sing 473 n n 
C33 H331 PEF sing 474 n n 
C34 C35 PEF sing 475 n n 
C34 H342 PEF sing 476 n n 
C34 H341 PEF sing 477 n n 
C35 C36 PEF sing 478 n n 
C35 H352 PEF sing 479 n n 
C35 H351 PEF sing 480 n n 
C36 C37 PEF sing 481 n n 
C36 H362 PEF sing 482 n n 
C36 H361 PEF sing 483 n n 
C37 C38 PEF sing 484 n n 
C37 H372 PEF sing 485 n n 
C37 H371 PEF sing 486 n n 
C38 C39 PEF sing 487 n n 
C38 H382 PEF sing 488 n n 
C38 H381 PEF sing 489 n n 
C39 C40 PEF sing 490 n n 
C39 H392 PEF sing 491 n n 
C39 H391 PEF sing 492 n n 
C40 C41 PEF sing 493 n n 
C40 H402 PEF sing 494 n n 
C40 H401 PEF sing 495 n n 
C41 C42 PEF sing 496 n n 
C41 H412 PEF sing 497 n n 
C41 H411 PEF sing 498 n n 
C42 C43 PEF sing 499 n n 
C42 H422 PEF sing 500 n n 
C42 H421 PEF sing 501 n n 
C43 C44 PEF sing 502 n n 
C43 H432 PEF sing 503 n n 
C43 H431 PEF sing 504 n n 
C44 C45 PEF sing 505 n n 
C44 H442 PEF sing 506 n n 
C44 H441 PEF sing 507 n n 
C45 H452 PEF sing 508 n n 
C45 H451 PEF sing 509 n n 
C45 H453 PEF sing 510 n n 
O1P P PEF doub 511 n n 
O2P P PEF sing 512 n n 
O2P HOP2 PEF sing 513 n n 
O3P P PEF sing 514 n n 
O4P P PEF sing 515 n n 
#
_atom_sites.entry_id                     7QOA 
_atom_sites.fract_transf_matrix[1][1]    0.009238 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004784 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009761 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CYT A 1 501 501 CYT CYT . 
D 3 PEF A 1 502 701 PEF PEF . 
E 4 LMT A 1 503 1201 LMT LMT . 
F 5 A6L A 1 504 1202 A6L A6L . 
G 5 A6L A 1 505 1203 A6L A6L . 
H 6 NA A 1 506 1 NA NA . 
I 2 CYT B 1 501 501 CYT CYT . 
J 5 A6L B 1 502 502 A6L A6L . 
K 5 A6L B 1 503 503 A6L A6L . 
L 5 A6L B 1 504 504 A6L A6L . 
M 6 NA B 1 505 2 NA NA . 
N 7 HOH A 1 601 33 HOH HOH . 
N 7 HOH A 2 602 59 HOH HOH . 
N 7 HOH A 3 603 58 HOH HOH . 
N 7 HOH A 4 604 1 HOH HOH . 
N 7 HOH A 5 605 17 HOH HOH . 
N 7 HOH A 6 606 4 HOH HOH . 
N 7 HOH A 7 607 36 HOH HOH . 
N 7 HOH A 8 608 56 HOH HOH . 
N 7 HOH A 9 609 63 HOH HOH . 
N 7 HOH A 10 610 83 HOH HOH . 
N 7 HOH A 11 611 92 HOH HOH . 
N 7 HOH A 12 612 20 HOH HOH . 
N 7 HOH A 13 613 81 HOH HOH . 
N 7 HOH A 14 614 85 HOH HOH . 
N 7 HOH A 15 615 9 HOH HOH . 
N 7 HOH A 16 616 60 HOH HOH . 
N 7 HOH A 17 617 10 HOH HOH . 
N 7 HOH A 18 618 25 HOH HOH . 
N 7 HOH A 19 619 6 HOH HOH . 
N 7 HOH A 20 620 35 HOH HOH . 
N 7 HOH A 21 621 62 HOH HOH . 
N 7 HOH A 22 622 8 HOH HOH . 
N 7 HOH A 23 623 27 HOH HOH . 
N 7 HOH A 24 624 23 HOH HOH . 
N 7 HOH A 25 625 19 HOH HOH . 
N 7 HOH A 26 626 18 HOH HOH . 
N 7 HOH A 27 627 64 HOH HOH . 
N 7 HOH A 28 628 31 HOH HOH . 
N 7 HOH A 29 629 82 HOH HOH . 
N 7 HOH A 30 630 41 HOH HOH . 
N 7 HOH A 31 631 93 HOH HOH . 
N 7 HOH A 32 632 57 HOH HOH . 
N 7 HOH A 33 633 61 HOH HOH . 
N 7 HOH A 34 634 65 HOH HOH . 
N 7 HOH A 35 635 32 HOH HOH . 
N 7 HOH A 36 636 54 HOH HOH . 
O 7 HOH B 1 601 77 HOH HOH . 
O 7 HOH B 2 602 69 HOH HOH . 
O 7 HOH B 3 603 12 HOH HOH . 
O 7 HOH B 4 604 46 HOH HOH . 
O 7 HOH B 5 605 48 HOH HOH . 
O 7 HOH B 6 606 34 HOH HOH . 
O 7 HOH B 7 607 68 HOH HOH . 
O 7 HOH B 8 608 71 HOH HOH . 
O 7 HOH B 9 609 67 HOH HOH . 
O 7 HOH B 10 610 16 HOH HOH . 
O 7 HOH B 11 611 30 HOH HOH . 
O 7 HOH B 12 612 26 HOH HOH . 
O 7 HOH B 13 613 79 HOH HOH . 
O 7 HOH B 14 614 15 HOH HOH . 
O 7 HOH B 15 615 70 HOH HOH . 
O 7 HOH B 16 616 66 HOH HOH . 
O 7 HOH B 17 617 73 HOH HOH . 
O 7 HOH B 18 618 47 HOH HOH . 
O 7 HOH B 19 619 50 HOH HOH . 
O 7 HOH B 20 620 11 HOH HOH . 
O 7 HOH B 21 621 89 HOH HOH . 
O 7 HOH B 22 622 90 HOH HOH . 
O 7 HOH B 23 623 91 HOH HOH . 
O 7 HOH B 24 624 45 HOH HOH . 
O 7 HOH B 25 625 78 HOH HOH . 
O 7 HOH B 26 626 7 HOH HOH . 
O 7 HOH B 27 627 87 HOH HOH . 
O 7 HOH B 28 628 86 HOH HOH . 
O 7 HOH B 29 629 74 HOH HOH . 
O 7 HOH B 30 630 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 PEF . . . D 3 -9.321 -10.099 41.102 1 59.15 ? C10 PEF 502 A 1 
HETATM 2 C C11 PEF . . . D 3 -9.013 -11.347 41.929 1 62.23 ? C11 PEF 502 A 1 
HETATM 3 C C12 PEF . . . D 3 -8.926 -12.564 41.013 1 57.11 ? C12 PEF 502 A 1 
HETATM 4 C C13 PEF . . . D 3 -9.332 -13.815 41.798 1 51.85 ? C13 PEF 502 A 1 
HETATM 5 C C14 PEF . . . D 3 -9.396 -15.01 40.843 1 51.58 ? C14 PEF 502 A 1 
HETATM 6 C C15 PEF . . . D 3 -8.084 -15.811 40.907 1 53.2 ? C15 PEF 502 A 1 
HETATM 7 C C16 PEF . . . D 3 -8.214 -17.121 40.126 1 56.67 ? C16 PEF 502 A 1 
HETATM 8 C C17 PEF . . . D 3 -6.85 -17.593 39.603 1 56.72 ? C17 PEF 502 A 1 
HETATM 9 C C18 PEF . . . D 3 -6.825 -17.574 38.068 1 51.08 ? C18 PEF 502 A 1 
HETATM 10 C C19 PEF . . . D 3 -7.281 -18.912 37.495 1 53.54 ? C19 PEF 502 A 1 
HETATM 11 C C20 PEF . . . D 3 -6.172 -19.5 36.625 1 61.47 ? C20 PEF 502 A 1 
HETATM 12 C C30 PEF . . . D 3 -3.536 -5.916 41.443 1 59.96 ? C30 PEF 502 A 1 
HETATM 13 C C31 PEF . . . D 3 -3.715 -7.277 42.121 1 69.57 ? C31 PEF 502 A 1 
HETATM 14 C C32 PEF . . . D 3 -4.463 -8.227 41.181 1 65.26 ? C32 PEF 502 A 1 
HETATM 15 C C33 PEF . . . D 3 -4.552 -9.609 41.836 1 60.56 ? C33 PEF 502 A 1 
HETATM 16 C C34 PEF . . . D 3 -5.507 -10.477 41.014 1 58.48 ? C34 PEF 502 A 1 
HETATM 17 C C35 PEF . . . D 3 -5.346 -11.928 41.443 1 54 ? C35 PEF 502 A 1 
HETATM 18 C C36 PEF . . . D 3 -4.02 -12.441 40.899 1 54.96 ? C36 PEF 502 A 1 
HETATM 19 C C37 PEF . . . D 3 -4.33 -13.387 39.745 1 54.95 ? C37 PEF 502 A 1 
HETATM 20 C C38 PEF . . . D 3 -3.542 -14.697 39.835 1 52.18 ? C38 PEF 502 A 1 
HETATM 21 C C39 PEF . . . D 3 -2.924 -14.973 38.465 1 49.75 ? C39 PEF 502 A 1 
HETATM 22 C C40 PEF . . . D 3 -2.06 -16.238 38.484 1 50.94 ? C40 PEF 502 A 1 
HETATM 23 C C41 PEF . . . D 3 -1.302 -16.351 37.153 1 45.34 ? C41 PEF 502 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           23 
#