data_7QOA # _model_server_result.job_id rrQf60tbemZbVKSkE3D0BQ _model_server_result.datetime_utc '2024-11-28 13:26:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qoa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7QOA # _exptl.entry_id 7QOA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 691.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QOA _cell.length_a 108.246 _cell.length_b 209.027 _cell.length_c 102.452 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QOA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 29 A GLY 29 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc2 A O PHE 32 A PHE 32 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc3 A O ASN 275 A ASN 275 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc4 A OG1 THR 278 A THR 278 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 A OG1 THR 279 A THR 279 1_555 H NA NA . A NA 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc6 B O GLY 29 B GLY 29 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc7 B O PHE 32 B PHE 32 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc8 B O ASN 275 B ASN 275 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc9 B OG1 THR 278 B THR 278 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc10 B OG1 THR 279 B THR 279 1_555 M NA NA . B NA 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id PEF _chem_comp.mon_nstd_flag . _chem_comp.name DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 PEF sing 396 n n C2 C3 PEF sing 397 n n C2 O2 PEF sing 398 n n C2 H21 PEF sing 399 n n C1 O3P PEF sing 400 n n C1 H11 PEF sing 401 n n C1 H12 PEF sing 402 n n N C5 PEF sing 403 n n N HN1 PEF sing 404 n n N HN2 PEF sing 405 n n C3 O3 PEF sing 406 n n C3 H31 PEF sing 407 n n C3 H32 PEF sing 408 n n C4 C5 PEF sing 409 n n C4 O4P PEF sing 410 n n C4 H41 PEF sing 411 n n C4 H42 PEF sing 412 n n C5 H51 PEF sing 413 n n C5 H52 PEF sing 414 n n C10 C11 PEF sing 415 n n C10 O4 PEF doub 416 n n C10 O2 PEF sing 417 n n C11 C12 PEF sing 418 n n C11 H112 PEF sing 419 n n C11 H111 PEF sing 420 n n C12 C13 PEF sing 421 n n C12 H122 PEF sing 422 n n C12 H121 PEF sing 423 n n C13 C14 PEF sing 424 n n C13 H132 PEF sing 425 n n C13 H131 PEF sing 426 n n C14 C15 PEF sing 427 n n C14 H142 PEF sing 428 n n C14 H141 PEF sing 429 n n C15 C16 PEF sing 430 n n C15 H152 PEF sing 431 n n C15 H151 PEF sing 432 n n C16 C17 PEF sing 433 n n C16 H162 PEF sing 434 n n C16 H161 PEF sing 435 n n C17 C18 PEF sing 436 n n C17 H172 PEF sing 437 n n C17 H171 PEF sing 438 n n C18 C19 PEF sing 439 n n C18 H182 PEF sing 440 n n C18 H181 PEF sing 441 n n C19 C20 PEF sing 442 n n C19 H192 PEF sing 443 n n C19 H191 PEF sing 444 n n C20 C21 PEF sing 445 n n C20 H202 PEF sing 446 n n C20 H201 PEF sing 447 n n C21 C22 PEF sing 448 n n C21 H212 PEF sing 449 n n C21 H211 PEF sing 450 n n C22 C23 PEF sing 451 n n C22 H222 PEF sing 452 n n C22 H221 PEF sing 453 n n C23 C24 PEF sing 454 n n C23 H232 PEF sing 455 n n C23 H231 PEF sing 456 n n C24 C25 PEF sing 457 n n C24 H242 PEF sing 458 n n C24 H241 PEF sing 459 n n C25 H252 PEF sing 460 n n C25 H251 PEF sing 461 n n C25 H253 PEF sing 462 n n C30 C31 PEF sing 463 n n C30 O5 PEF doub 464 n n C30 O3 PEF sing 465 n n C31 C32 PEF sing 466 n n C31 H312 PEF sing 467 n n C31 H311 PEF sing 468 n n C32 C33 PEF sing 469 n n C32 H322 PEF sing 470 n n C32 H321 PEF sing 471 n n C33 C34 PEF sing 472 n n C33 H332 PEF sing 473 n n C33 H331 PEF sing 474 n n C34 C35 PEF sing 475 n n C34 H342 PEF sing 476 n n C34 H341 PEF sing 477 n n C35 C36 PEF sing 478 n n C35 H352 PEF sing 479 n n C35 H351 PEF sing 480 n n C36 C37 PEF sing 481 n n C36 H362 PEF sing 482 n n C36 H361 PEF sing 483 n n C37 C38 PEF sing 484 n n C37 H372 PEF sing 485 n n C37 H371 PEF sing 486 n n C38 C39 PEF sing 487 n n C38 H382 PEF sing 488 n n C38 H381 PEF sing 489 n n C39 C40 PEF sing 490 n n C39 H392 PEF sing 491 n n C39 H391 PEF sing 492 n n C40 C41 PEF sing 493 n n C40 H402 PEF sing 494 n n C40 H401 PEF sing 495 n n C41 C42 PEF sing 496 n n C41 H412 PEF sing 497 n n C41 H411 PEF sing 498 n n C42 C43 PEF sing 499 n n C42 H422 PEF sing 500 n n C42 H421 PEF sing 501 n n C43 C44 PEF sing 502 n n C43 H432 PEF sing 503 n n C43 H431 PEF sing 504 n n C44 C45 PEF sing 505 n n C44 H442 PEF sing 506 n n C44 H441 PEF sing 507 n n C45 H452 PEF sing 508 n n C45 H451 PEF sing 509 n n C45 H453 PEF sing 510 n n O1P P PEF doub 511 n n O2P P PEF sing 512 n n O2P HOP2 PEF sing 513 n n O3P P PEF sing 514 n n O4P P PEF sing 515 n n # _atom_sites.entry_id 7QOA _atom_sites.fract_transf_matrix[1][1] 0.009238 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004784 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYT A 1 501 501 CYT CYT . D 3 PEF A 1 502 701 PEF PEF . E 4 LMT A 1 503 1201 LMT LMT . F 5 A6L A 1 504 1202 A6L A6L . G 5 A6L A 1 505 1203 A6L A6L . H 6 NA A 1 506 1 NA NA . I 2 CYT B 1 501 501 CYT CYT . J 5 A6L B 1 502 502 A6L A6L . K 5 A6L B 1 503 503 A6L A6L . L 5 A6L B 1 504 504 A6L A6L . M 6 NA B 1 505 2 NA NA . N 7 HOH A 1 601 33 HOH HOH . N 7 HOH A 2 602 59 HOH HOH . N 7 HOH A 3 603 58 HOH HOH . N 7 HOH A 4 604 1 HOH HOH . N 7 HOH A 5 605 17 HOH HOH . N 7 HOH A 6 606 4 HOH HOH . N 7 HOH A 7 607 36 HOH HOH . N 7 HOH A 8 608 56 HOH HOH . N 7 HOH A 9 609 63 HOH HOH . N 7 HOH A 10 610 83 HOH HOH . N 7 HOH A 11 611 92 HOH HOH . N 7 HOH A 12 612 20 HOH HOH . N 7 HOH A 13 613 81 HOH HOH . N 7 HOH A 14 614 85 HOH HOH . N 7 HOH A 15 615 9 HOH HOH . N 7 HOH A 16 616 60 HOH HOH . N 7 HOH A 17 617 10 HOH HOH . N 7 HOH A 18 618 25 HOH HOH . N 7 HOH A 19 619 6 HOH HOH . N 7 HOH A 20 620 35 HOH HOH . N 7 HOH A 21 621 62 HOH HOH . N 7 HOH A 22 622 8 HOH HOH . N 7 HOH A 23 623 27 HOH HOH . N 7 HOH A 24 624 23 HOH HOH . N 7 HOH A 25 625 19 HOH HOH . N 7 HOH A 26 626 18 HOH HOH . N 7 HOH A 27 627 64 HOH HOH . N 7 HOH A 28 628 31 HOH HOH . N 7 HOH A 29 629 82 HOH HOH . N 7 HOH A 30 630 41 HOH HOH . N 7 HOH A 31 631 93 HOH HOH . N 7 HOH A 32 632 57 HOH HOH . N 7 HOH A 33 633 61 HOH HOH . N 7 HOH A 34 634 65 HOH HOH . N 7 HOH A 35 635 32 HOH HOH . N 7 HOH A 36 636 54 HOH HOH . O 7 HOH B 1 601 77 HOH HOH . O 7 HOH B 2 602 69 HOH HOH . O 7 HOH B 3 603 12 HOH HOH . O 7 HOH B 4 604 46 HOH HOH . O 7 HOH B 5 605 48 HOH HOH . O 7 HOH B 6 606 34 HOH HOH . O 7 HOH B 7 607 68 HOH HOH . O 7 HOH B 8 608 71 HOH HOH . O 7 HOH B 9 609 67 HOH HOH . O 7 HOH B 10 610 16 HOH HOH . O 7 HOH B 11 611 30 HOH HOH . O 7 HOH B 12 612 26 HOH HOH . O 7 HOH B 13 613 79 HOH HOH . O 7 HOH B 14 614 15 HOH HOH . O 7 HOH B 15 615 70 HOH HOH . O 7 HOH B 16 616 66 HOH HOH . O 7 HOH B 17 617 73 HOH HOH . O 7 HOH B 18 618 47 HOH HOH . O 7 HOH B 19 619 50 HOH HOH . O 7 HOH B 20 620 11 HOH HOH . O 7 HOH B 21 621 89 HOH HOH . O 7 HOH B 22 622 90 HOH HOH . O 7 HOH B 23 623 91 HOH HOH . O 7 HOH B 24 624 45 HOH HOH . O 7 HOH B 25 625 78 HOH HOH . O 7 HOH B 26 626 7 HOH HOH . O 7 HOH B 27 627 87 HOH HOH . O 7 HOH B 28 628 86 HOH HOH . O 7 HOH B 29 629 74 HOH HOH . O 7 HOH B 30 630 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 PEF . . . D 3 -9.321 -10.099 41.102 1 59.15 ? C10 PEF 502 A 1 HETATM 2 C C11 PEF . . . D 3 -9.013 -11.347 41.929 1 62.23 ? C11 PEF 502 A 1 HETATM 3 C C12 PEF . . . D 3 -8.926 -12.564 41.013 1 57.11 ? C12 PEF 502 A 1 HETATM 4 C C13 PEF . . . D 3 -9.332 -13.815 41.798 1 51.85 ? C13 PEF 502 A 1 HETATM 5 C C14 PEF . . . D 3 -9.396 -15.01 40.843 1 51.58 ? C14 PEF 502 A 1 HETATM 6 C C15 PEF . . . D 3 -8.084 -15.811 40.907 1 53.2 ? C15 PEF 502 A 1 HETATM 7 C C16 PEF . . . D 3 -8.214 -17.121 40.126 1 56.67 ? C16 PEF 502 A 1 HETATM 8 C C17 PEF . . . D 3 -6.85 -17.593 39.603 1 56.72 ? C17 PEF 502 A 1 HETATM 9 C C18 PEF . . . D 3 -6.825 -17.574 38.068 1 51.08 ? C18 PEF 502 A 1 HETATM 10 C C19 PEF . . . D 3 -7.281 -18.912 37.495 1 53.54 ? C19 PEF 502 A 1 HETATM 11 C C20 PEF . . . D 3 -6.172 -19.5 36.625 1 61.47 ? C20 PEF 502 A 1 HETATM 12 C C30 PEF . . . D 3 -3.536 -5.916 41.443 1 59.96 ? C30 PEF 502 A 1 HETATM 13 C C31 PEF . . . D 3 -3.715 -7.277 42.121 1 69.57 ? C31 PEF 502 A 1 HETATM 14 C C32 PEF . . . D 3 -4.463 -8.227 41.181 1 65.26 ? C32 PEF 502 A 1 HETATM 15 C C33 PEF . . . D 3 -4.552 -9.609 41.836 1 60.56 ? C33 PEF 502 A 1 HETATM 16 C C34 PEF . . . D 3 -5.507 -10.477 41.014 1 58.48 ? C34 PEF 502 A 1 HETATM 17 C C35 PEF . . . D 3 -5.346 -11.928 41.443 1 54 ? C35 PEF 502 A 1 HETATM 18 C C36 PEF . . . D 3 -4.02 -12.441 40.899 1 54.96 ? C36 PEF 502 A 1 HETATM 19 C C37 PEF . . . D 3 -4.33 -13.387 39.745 1 54.95 ? C37 PEF 502 A 1 HETATM 20 C C38 PEF . . . D 3 -3.542 -14.697 39.835 1 52.18 ? C38 PEF 502 A 1 HETATM 21 C C39 PEF . . . D 3 -2.924 -14.973 38.465 1 49.75 ? C39 PEF 502 A 1 HETATM 22 C C40 PEF . . . D 3 -2.06 -16.238 38.484 1 50.94 ? C40 PEF 502 A 1 HETATM 23 C C41 PEF . . . D 3 -1.302 -16.351 37.153 1 45.34 ? C41 PEF 502 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #