data_7QPN # _model_server_result.job_id NoLcE5PyBBEYSqAFjC3dVg _model_server_result.datetime_utc '2024-10-15 13:15:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qpn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7QPN # _exptl.entry_id 7QPN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.16 _cell.angle_gamma 90 _cell.entry_id 7QPN _cell.length_a 47.921 _cell.length_b 65.625 _cell.length_c 117.12 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QPN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 7QPN _atom_sites.fract_transf_matrix[1][1] 0.020868 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001154 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DVF A 1 501 501 DVF INH . D 3 ANP A 1 502 502 ANP ANP . E 3 ANP B 1 501 501 ANP ANP . F 2 DVF B 1 502 503 DVF INH . G 4 HOH A 1 601 73 HOH HOH . G 4 HOH A 2 602 282 HOH HOH . G 4 HOH A 3 603 183 HOH HOH . G 4 HOH A 4 604 325 HOH HOH . G 4 HOH A 5 605 221 HOH HOH . G 4 HOH A 6 606 314 HOH HOH . G 4 HOH A 7 607 114 HOH HOH . G 4 HOH A 8 608 324 HOH HOH . G 4 HOH A 9 609 190 HOH HOH . G 4 HOH A 10 610 141 HOH HOH . G 4 HOH A 11 611 306 HOH HOH . G 4 HOH A 12 612 186 HOH HOH . G 4 HOH A 13 613 129 HOH HOH . G 4 HOH A 14 614 103 HOH HOH . G 4 HOH A 15 615 271 HOH HOH . G 4 HOH A 16 616 82 HOH HOH . G 4 HOH A 17 617 322 HOH HOH . G 4 HOH A 18 618 281 HOH HOH . G 4 HOH A 19 619 81 HOH HOH . G 4 HOH A 20 620 38 HOH HOH . G 4 HOH A 21 621 179 HOH HOH . G 4 HOH A 22 622 98 HOH HOH . G 4 HOH A 23 623 65 HOH HOH . G 4 HOH A 24 624 56 HOH HOH . G 4 HOH A 25 625 39 HOH HOH . G 4 HOH A 26 626 273 HOH HOH . G 4 HOH A 27 627 90 HOH HOH . G 4 HOH A 28 628 166 HOH HOH . G 4 HOH A 29 629 16 HOH HOH . G 4 HOH A 30 630 167 HOH HOH . G 4 HOH A 31 631 112 HOH HOH . G 4 HOH A 32 632 125 HOH HOH . G 4 HOH A 33 633 213 HOH HOH . G 4 HOH A 34 634 74 HOH HOH . G 4 HOH A 35 635 45 HOH HOH . G 4 HOH A 36 636 87 HOH HOH . G 4 HOH A 37 637 134 HOH HOH . G 4 HOH A 38 638 28 HOH HOH . G 4 HOH A 39 639 7 HOH HOH . G 4 HOH A 40 640 108 HOH HOH . G 4 HOH A 41 641 231 HOH HOH . G 4 HOH A 42 642 244 HOH HOH . G 4 HOH A 43 643 79 HOH HOH . G 4 HOH A 44 644 138 HOH HOH . G 4 HOH A 45 645 259 HOH HOH . G 4 HOH A 46 646 323 HOH HOH . G 4 HOH A 47 647 150 HOH HOH . G 4 HOH A 48 648 119 HOH HOH . G 4 HOH A 49 649 80 HOH HOH . G 4 HOH A 50 650 140 HOH HOH . G 4 HOH A 51 651 264 HOH HOH . G 4 HOH A 52 652 279 HOH HOH . G 4 HOH A 53 653 169 HOH HOH . G 4 HOH A 54 654 286 HOH HOH . G 4 HOH A 55 655 200 HOH HOH . H 4 HOH B 1 601 309 HOH HOH . H 4 HOH B 2 602 252 HOH HOH . H 4 HOH B 3 603 156 HOH HOH . H 4 HOH B 4 604 321 HOH HOH . H 4 HOH B 5 605 307 HOH HOH . H 4 HOH B 6 606 127 HOH HOH . H 4 HOH B 7 607 173 HOH HOH . H 4 HOH B 8 608 232 HOH HOH . H 4 HOH B 9 609 234 HOH HOH . H 4 HOH B 10 610 294 HOH HOH . H 4 HOH B 11 611 49 HOH HOH . H 4 HOH B 12 612 302 HOH HOH . H 4 HOH B 13 613 93 HOH HOH . H 4 HOH B 14 614 171 HOH HOH . H 4 HOH B 15 615 100 HOH HOH . H 4 HOH B 16 616 288 HOH HOH . H 4 HOH B 17 617 26 HOH HOH . H 4 HOH B 18 618 219 HOH HOH . H 4 HOH B 19 619 77 HOH HOH . H 4 HOH B 20 620 238 HOH HOH . H 4 HOH B 21 621 299 HOH HOH . H 4 HOH B 22 622 290 HOH HOH . H 4 HOH B 23 623 296 HOH HOH . H 4 HOH B 24 624 239 HOH HOH . H 4 HOH B 25 625 301 HOH HOH . H 4 HOH B 26 626 192 HOH HOH . H 4 HOH B 27 627 110 HOH HOH . H 4 HOH B 28 628 250 HOH HOH . H 4 HOH B 29 629 85 HOH HOH . H 4 HOH B 30 630 198 HOH HOH . H 4 HOH B 31 631 216 HOH HOH . H 4 HOH B 32 632 157 HOH HOH . H 4 HOH B 33 633 181 HOH HOH . H 4 HOH B 34 634 59 HOH HOH . H 4 HOH B 35 635 63 HOH HOH . H 4 HOH B 36 636 237 HOH HOH . H 4 HOH B 37 637 319 HOH HOH . H 4 HOH B 38 638 51 HOH HOH . H 4 HOH B 39 639 27 HOH HOH . H 4 HOH B 40 640 188 HOH HOH . H 4 HOH B 41 641 163 HOH HOH . H 4 HOH B 42 642 257 HOH HOH . H 4 HOH B 43 643 101 HOH HOH . H 4 HOH B 44 644 303 HOH HOH . H 4 HOH B 45 645 170 HOH HOH . H 4 HOH B 46 646 191 HOH HOH . H 4 HOH B 47 647 315 HOH HOH . H 4 HOH B 48 648 76 HOH HOH . H 4 HOH B 49 649 118 HOH HOH . H 4 HOH B 50 650 230 HOH HOH . H 4 HOH B 51 651 158 HOH HOH . H 4 HOH B 52 652 24 HOH HOH . H 4 HOH B 53 653 104 HOH HOH . H 4 HOH B 54 654 293 HOH HOH . H 4 HOH B 55 655 255 HOH HOH . H 4 HOH B 56 656 160 HOH HOH . H 4 HOH B 57 657 116 HOH HOH . H 4 HOH B 58 658 172 HOH HOH . H 4 HOH B 59 659 12 HOH HOH . H 4 HOH B 60 660 151 HOH HOH . H 4 HOH B 61 661 130 HOH HOH . H 4 HOH B 62 662 21 HOH HOH . H 4 HOH B 63 663 159 HOH HOH . H 4 HOH B 64 664 67 HOH HOH . H 4 HOH B 65 665 285 HOH HOH . H 4 HOH B 66 666 78 HOH HOH . H 4 HOH B 67 667 5 HOH HOH . H 4 HOH B 68 668 263 HOH HOH . H 4 HOH B 69 669 185 HOH HOH . H 4 HOH B 70 670 3 HOH HOH . H 4 HOH B 71 671 35 HOH HOH . H 4 HOH B 72 672 60 HOH HOH . H 4 HOH B 73 673 289 HOH HOH . H 4 HOH B 74 674 13 HOH HOH . H 4 HOH B 75 675 132 HOH HOH . H 4 HOH B 76 676 241 HOH HOH . H 4 HOH B 77 677 318 HOH HOH . H 4 HOH B 78 678 102 HOH HOH . H 4 HOH B 79 679 131 HOH HOH . H 4 HOH B 80 680 91 HOH HOH . H 4 HOH B 81 681 10 HOH HOH . H 4 HOH B 82 682 278 HOH HOH . H 4 HOH B 83 683 62 HOH HOH . H 4 HOH B 84 684 161 HOH HOH . H 4 HOH B 85 685 316 HOH HOH . H 4 HOH B 86 686 317 HOH HOH . H 4 HOH B 87 687 9 HOH HOH . H 4 HOH B 88 688 52 HOH HOH . H 4 HOH B 89 689 162 HOH HOH . H 4 HOH B 90 690 4 HOH HOH . H 4 HOH B 91 691 71 HOH HOH . H 4 HOH B 92 692 40 HOH HOH . H 4 HOH B 93 693 34 HOH HOH . H 4 HOH B 94 694 174 HOH HOH . H 4 HOH B 95 695 14 HOH HOH . H 4 HOH B 96 696 297 HOH HOH . H 4 HOH B 97 697 284 HOH HOH . H 4 HOH B 98 698 72 HOH HOH . H 4 HOH B 99 699 295 HOH HOH . H 4 HOH B 100 700 218 HOH HOH . H 4 HOH B 101 701 154 HOH HOH . H 4 HOH B 102 702 305 HOH HOH . H 4 HOH B 103 703 32 HOH HOH . H 4 HOH B 104 704 17 HOH HOH . H 4 HOH B 105 705 33 HOH HOH . H 4 HOH B 106 706 205 HOH HOH . H 4 HOH B 107 707 92 HOH HOH . H 4 HOH B 108 708 178 HOH HOH . H 4 HOH B 109 709 47 HOH HOH . H 4 HOH B 110 710 320 HOH HOH . H 4 HOH B 111 711 194 HOH HOH . H 4 HOH B 112 712 107 HOH HOH . H 4 HOH B 113 713 64 HOH HOH . H 4 HOH B 114 714 106 HOH HOH . H 4 HOH B 115 715 70 HOH HOH . H 4 HOH B 116 716 242 HOH HOH . H 4 HOH B 117 717 46 HOH HOH . H 4 HOH B 118 718 31 HOH HOH . H 4 HOH B 119 719 66 HOH HOH . H 4 HOH B 120 720 99 HOH HOH . H 4 HOH B 121 721 29 HOH HOH . H 4 HOH B 122 722 312 HOH HOH . H 4 HOH B 123 723 121 HOH HOH . H 4 HOH B 124 724 229 HOH HOH . H 4 HOH B 125 725 94 HOH HOH . H 4 HOH B 126 726 149 HOH HOH . H 4 HOH B 127 727 83 HOH HOH . H 4 HOH B 128 728 84 HOH HOH . H 4 HOH B 129 729 236 HOH HOH . H 4 HOH B 130 730 193 HOH HOH . H 4 HOH B 131 731 168 HOH HOH . H 4 HOH B 132 732 120 HOH HOH . H 4 HOH B 133 733 300 HOH HOH . H 4 HOH B 134 734 270 HOH HOH . H 4 HOH B 135 735 117 HOH HOH . H 4 HOH B 136 736 176 HOH HOH . H 4 HOH B 137 737 227 HOH HOH . H 4 HOH B 138 738 203 HOH HOH . H 4 HOH B 139 739 211 HOH HOH . H 4 HOH B 140 740 30 HOH HOH . H 4 HOH B 141 741 304 HOH HOH . H 4 HOH B 142 742 75 HOH HOH . H 4 HOH B 143 743 57 HOH HOH . H 4 HOH B 144 744 215 HOH HOH . H 4 HOH B 145 745 251 HOH HOH . H 4 HOH B 146 746 95 HOH HOH . H 4 HOH B 147 747 313 HOH HOH . H 4 HOH B 148 748 224 HOH HOH . H 4 HOH B 149 749 298 HOH HOH . H 4 HOH B 150 750 41 HOH HOH . H 4 HOH B 151 751 209 HOH HOH . H 4 HOH B 152 752 199 HOH HOH . H 4 HOH B 153 753 310 HOH HOH . H 4 HOH B 154 754 223 HOH HOH . H 4 HOH B 155 755 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 3 5.126 20.433 44.101 1 112.22 ? PG ANP 502 A 1 HETATM 2 O O1G ANP . . . D 3 5.337 19.475 42.955 1 110.15 ? O1G ANP 502 A 1 HETATM 3 O O2G ANP . . . D 3 3.635 20.76 44.203 1 96.72 ? O2G ANP 502 A 1 HETATM 4 O O3G ANP . . . D 3 5.918 21.695 43.816 1 92.61 ? O3G ANP 502 A 1 HETATM 5 P PB ANP . . . D 3 7.053 18.935 45.831 1 121.7 ? PB ANP 502 A 1 HETATM 6 O O1B ANP . . . D 3 7.774 18.443 44.606 1 126.8 ? O1B ANP 502 A 1 HETATM 7 O O2B ANP . . . D 3 7.834 19.752 46.822 1 132.25 ? O2B ANP 502 A 1 HETATM 8 N N3B ANP . . . D 3 5.649 19.723 45.482 1 118.17 ? N3B ANP 502 A 1 HETATM 9 P PA ANP . . . D 3 6.232 16.07 46.395 1 73.21 ? PA ANP 502 A 1 HETATM 10 O O1A ANP . . . D 3 4.847 15.734 46.865 1 71.75 ? O1A ANP 502 A 1 HETATM 11 O O2A ANP . . . D 3 6.646 15.756 44.993 1 66.58 ? O2A ANP 502 A 1 HETATM 12 O O3A ANP . . . D 3 6.554 17.631 46.665 1 96.38 ? O3A ANP 502 A 1 HETATM 13 O O5' ANP . . . D 3 7.252 15.368 47.399 1 88.77 ? O5' ANP 502 A 1 HETATM 14 C C5' ANP . . . D 3 7.127 13.953 47.718 1 95.42 ? C5' ANP 502 A 1 HETATM 15 C C4' ANP . . . D 3 8.251 13.562 48.65 1 99.17 ? C4' ANP 502 A 1 HETATM 16 O O4' ANP . . . D 3 9.498 13.449 47.908 1 103.27 ? O4' ANP 502 A 1 HETATM 17 C C3' ANP . . . D 3 8.572 14.572 49.757 1 102.15 ? C3' ANP 502 A 1 HETATM 18 O O3' ANP . . . D 3 9.178 13.898 50.852 1 104.78 ? O3' ANP 502 A 1 HETATM 19 C C2' ANP . . . D 3 9.517 15.522 49.015 1 101.6 ? C2' ANP 502 A 1 HETATM 20 O O2' ANP . . . D 3 10.263 16.367 49.862 1 105.58 ? O2' ANP 502 A 1 HETATM 21 C C1' ANP . . . D 3 10.37 14.506 48.258 1 98.82 ? C1' ANP 502 A 1 HETATM 22 N N9 ANP . . . D 3 10.966 15.023 47.034 1 89.83 ? N9 ANP 502 A 1 HETATM 23 C C8 ANP . . . D 3 10.306 15.623 45.983 1 83.38 ? C8 ANP 502 A 1 HETATM 24 N N7 ANP . . . D 3 11.122 15.969 45.018 1 83 ? N7 ANP 502 A 1 HETATM 25 C C5 ANP . . . D 3 12.383 15.569 45.453 1 88.38 ? C5 ANP 502 A 1 HETATM 26 C C6 ANP . . . D 3 13.666 15.654 44.871 1 82.41 ? C6 ANP 502 A 1 HETATM 27 N N6 ANP . . . D 3 13.901 16.19 43.675 1 77.1 ? N6 ANP 502 A 1 HETATM 28 N N1 ANP . . . D 3 14.705 15.139 45.576 1 87.22 ? N1 ANP 502 A 1 HETATM 29 C C2 ANP . . . D 3 14.461 14.605 46.783 1 85.39 ? C2 ANP 502 A 1 HETATM 30 N N3 ANP . . . D 3 13.305 14.481 47.431 1 80.39 ? N3 ANP 502 A 1 HETATM 31 C C4 ANP . . . D 3 12.294 14.983 46.7 1 87.37 ? C4 ANP 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #