data_7QQ6 # _model_server_result.job_id 2lCgkHaCIOC1ljcP1liI0w _model_server_result.datetime_utc '2024-10-11 07:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1701}' # _entry.id 7QQ6 # _exptl.entry_id 7QQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QQ6 _cell.length_a 155.42 _cell.length_b 162.6 _cell.length_c 123.89 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C21 H21 F N6 O' _chem_comp.formula_weight 392.429 _chem_comp.id 38O _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Dovitinib # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 38O sing 1 n n C4 N5 38O sing 2 n n C3 N2 38O sing 3 n n F22 C21 38O sing 4 n n N2 C1 38O sing 5 n n N2 C7 38O sing 6 n n N5 C6 38O sing 7 n n N5 C8 38O sing 8 n n N19 C18 38O sing 9 n n C6 C7 38O sing 10 n n C9 C8 38O doub 11 n y C9 C10 38O sing 12 n y C8 C16 38O sing 13 n y C21 C23 38O doub 14 n y C21 C20 38O sing 15 n y N11 C10 38O sing 16 n y N11 C12 38O doub 17 n y C10 C14 38O doub 18 n y C23 C24 38O sing 19 n y C18 C20 38O sing 20 n n C18 C17 38O doub 21 n n C16 C15 38O doub 22 n y C20 C26 38O doub 23 n y C12 C17 38O sing 24 n n C12 N13 38O sing 25 n y C14 C15 38O sing 26 n y C14 N13 38O sing 27 n y C17 C28 38O sing 28 n n C24 C25 38O doub 29 n y C26 C25 38O sing 30 n y C26 N27 38O sing 31 n n C28 N27 38O sing 32 n n C28 O29 38O doub 33 n n C1 H1 38O sing 34 n n C1 H2 38O sing 35 n n C1 H3 38O sing 36 n n C3 H4 38O sing 37 n n C3 H5 38O sing 38 n n C4 H6 38O sing 39 n n C4 H7 38O sing 40 n n C6 H8 38O sing 41 n n C6 H9 38O sing 42 n n C7 H10 38O sing 43 n n C7 H11 38O sing 44 n n N13 H12 38O sing 45 n n C15 H13 38O sing 46 n n C16 H14 38O sing 47 n n C23 H15 38O sing 48 n n C24 H16 38O sing 49 n n C9 H18 38O sing 50 n n N19 H20 38O sing 51 n n N19 H21 38O sing 52 n n C25 H22 38O sing 53 n n N27 H23 38O sing 54 n n # _atom_sites.entry_id 7QQ6 _atom_sites.fract_transf_matrix[1][1] 0.006434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 38O A 1 1701 2 38O 38O . F 2 38O B 1 1701 3 38O 38O . G 2 38O C 1 1701 1 38O 38O . H 2 38O D 1 1701 4 38O 38O . I 3 HOH A 1 1801 24 HOH HOH . I 3 HOH A 2 1802 22 HOH HOH . I 3 HOH A 3 1803 4 HOH HOH . I 3 HOH A 4 1804 7 HOH HOH . I 3 HOH A 5 1805 9 HOH HOH . I 3 HOH A 6 1806 10 HOH HOH . I 3 HOH A 7 1807 11 HOH HOH . I 3 HOH A 8 1808 2 HOH HOH . I 3 HOH A 9 1809 18 HOH HOH . I 3 HOH A 10 1810 17 HOH HOH . I 3 HOH A 11 1811 43 HOH HOH . I 3 HOH A 12 1812 34 HOH HOH . I 3 HOH A 13 1813 27 HOH HOH . I 3 HOH A 14 1814 26 HOH HOH . I 3 HOH A 15 1815 13 HOH HOH . I 3 HOH A 16 1816 25 HOH HOH . I 3 HOH A 17 1817 32 HOH HOH . I 3 HOH A 18 1818 23 HOH HOH . J 3 HOH B 1 1801 35 HOH HOH . J 3 HOH B 2 1802 41 HOH HOH . J 3 HOH B 3 1803 16 HOH HOH . J 3 HOH B 4 1804 6 HOH HOH . J 3 HOH B 5 1805 42 HOH HOH . J 3 HOH B 6 1806 21 HOH HOH . J 3 HOH B 7 1807 5 HOH HOH . J 3 HOH B 8 1808 1 HOH HOH . J 3 HOH B 9 1809 20 HOH HOH . J 3 HOH B 10 1810 30 HOH HOH . J 3 HOH B 11 1811 38 HOH HOH . J 3 HOH B 12 1812 44 HOH HOH . J 3 HOH B 13 1813 37 HOH HOH . K 3 HOH C 1 1801 39 HOH HOH . K 3 HOH C 2 1802 12 HOH HOH . K 3 HOH C 3 1803 29 HOH HOH . K 3 HOH C 4 1804 33 HOH HOH . K 3 HOH C 5 1805 45 HOH HOH . K 3 HOH C 6 1806 36 HOH HOH . K 3 HOH C 7 1807 31 HOH HOH . K 3 HOH C 8 1808 28 HOH HOH . L 3 HOH D 1 1801 15 HOH HOH . L 3 HOH D 2 1802 19 HOH HOH . L 3 HOH D 3 1803 14 HOH HOH . L 3 HOH D 4 1804 3 HOH HOH . L 3 HOH D 5 1805 8 HOH HOH . L 3 HOH D 6 1806 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 38O . . . E 2 -8.786 -48.458 41.016 1 102.52 ? C1 38O 1701 A 1 HETATM 2 C C3 38O . . . E 2 -7.708 -49.502 39.136 1 102.39 ? C3 38O 1701 A 1 HETATM 3 C C4 38O . . . E 2 -7.851 -49.91 37.684 1 101.32 ? C4 38O 1701 A 1 HETATM 4 C C6 38O . . . E 2 -10.222 -50.233 38.038 1 99.08 ? C6 38O 1701 A 1 HETATM 5 C C7 38O . . . E 2 -10.045 -49.82 39.485 1 101.28 ? C7 38O 1701 A 1 HETATM 6 C C8 38O . . . E 2 -9.072 -51.505 36.321 1 86.32 ? C8 38O 1701 A 1 HETATM 7 C C12 38O . . . E 2 -10.868 -53.495 32.658 1 66.08 ? C12 38O 1701 A 1 HETATM 8 N N13 38O . . . E 2 -9.546 -53.549 32.71 1 70.2 ? N13 38O 1701 A 1 HETATM 9 C C15 38O . . . E 2 -7.97 -52.639 34.473 1 77.64 ? C15 38O 1701 A 1 HETATM 10 C C16 38O . . . E 2 -7.909 -51.952 35.675 1 82.35 ? C16 38O 1701 A 1 HETATM 11 C C17 38O . . . E 2 -11.72 -54.05 31.59 1 63.28 ? C17 38O 1701 A 1 HETATM 12 C C18 38O . . . E 2 -13.091 -54.133 31.717 1 62.97 ? C18 38O 1701 A 1 HETATM 13 C C21 38O . . . E 2 -15.249 -54.837 30.6 1 69.97 ? C21 38O 1701 A 1 HETATM 14 C C23 38O . . . E 2 -15.941 -55.368 29.542 1 67.61 ? C23 38O 1701 A 1 HETATM 15 C C24 38O . . . E 2 -15.231 -55.781 28.429 1 67.92 ? C24 38O 1701 A 1 HETATM 16 O O29 38O . . . E 2 -9.794 -54.421 30.284 1 68.51 ? O29 38O 1701 A 1 HETATM 17 N N2 38O . . . E 2 -8.936 -48.879 39.623 1 102.16 ? N2 38O 1701 A 1 HETATM 18 N N5 38O . . . E 2 -8.986 -50.82 37.518 1 96.32 ? N5 38O 1701 A 1 HETATM 19 C C9 38O . . . E 2 -10.317 -51.759 35.736 1 79.85 ? C9 38O 1701 A 1 HETATM 20 C C10 38O . . . E 2 -10.368 -52.449 34.532 1 71.81 ? C10 38O 1701 A 1 HETATM 21 N N11 38O . . . E 2 -11.416 -52.847 33.721 1 65.15 ? N11 38O 1701 A 1 HETATM 22 C C14 38O . . . E 2 -9.211 -52.891 33.894 1 73.07 ? C14 38O 1701 A 1 HETATM 23 N N19 38O . . . E 2 -13.755 -53.725 32.807 1 58.39 ? N19 38O 1701 A 1 HETATM 24 C C20 38O . . . E 2 -13.87 -54.69 30.616 1 67.78 ? C20 38O 1701 A 1 HETATM 25 F F22 38O . . . E 2 -15.942 -54.434 31.688 1 73.28 ? F22 38O 1701 A 1 HETATM 26 C C25 38O . . . E 2 -13.852 -55.659 28.387 1 66.03 ? C25 38O 1701 A 1 HETATM 27 C C26 38O . . . E 2 -13.162 -55.118 29.469 1 65.43 ? C26 38O 1701 A 1 HETATM 28 N N27 38O . . . E 2 -11.775 -54.997 29.424 1 62.34 ? N27 38O 1701 A 1 HETATM 29 C C28 38O . . . E 2 -11.014 -54.487 30.419 1 64.16 ? C28 38O 1701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #