data_7QRF # _model_server_result.job_id '_ddMPSdINPUn7BVujZyq_Q' _model_server_result.datetime_utc '2024-11-24 23:14:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":506}' # _entry.id 7QRF # _exptl.entry_id 7QRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7QRF _cell.length_a 155.73 _cell.length_b 155.73 _cell.length_c 161.88 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 161.88 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N ? 6 L N N ? 6 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 3 1_555 A SG CYS 34 A CYS 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 64 A CYS 60 1_555 A SG CYS 125 A CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? disulf ? disulf3 A SG CYS 78 A CYS 74 1_555 A SG CYS 109 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf4 A SG CYS 96 A CYS 92 1_555 A SG CYS 120 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf5 A SG CYS 190 A CYS 186 1_555 A SG CYS 294 A CYS 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf6 A SG CYS 311 A CYS 307 1_555 A SG CYS 342 A CYS 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 C SG CYS 31 D CYS 31 1_555 C SG CYS 66 D CYS 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 C SG CYS 42 D CYS 42 1_555 C SG CYS 79 D CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 C SG CYS 50 D CYS 50 1_555 C SG CYS 64 D CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7QRF _atom_sites.fract_transf_matrix[1][1] 0.006421 _atom_sites.fract_transf_matrix[1][2] 0.003707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007415 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006177 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SO4 A 1 501 1 SO4 SO4 . E 5 PE4 A 1 502 2 PE4 PE4 . F 6 EDO A 1 503 4 EDO EDO . G 6 EDO A 1 504 5 EDO EDO . H 6 EDO A 1 505 6 EDO EDO . I 6 EDO A 1 506 7 EDO EDO . J 6 EDO A 1 507 8 EDO EDO . K 6 EDO A 1 508 9 EDO EDO . L 6 EDO D 1 201 3 EDO EDO . M 6 EDO D 1 202 10 EDO EDO . N 7 HOH A 1 601 86 HOH HOH . N 7 HOH A 2 602 21 HOH HOH . N 7 HOH A 3 603 1 HOH HOH . N 7 HOH A 4 604 20 HOH HOH . N 7 HOH A 5 605 5 HOH HOH . N 7 HOH A 6 606 110 HOH HOH . N 7 HOH A 7 607 36 HOH HOH . N 7 HOH A 8 608 69 HOH HOH . N 7 HOH A 9 609 49 HOH HOH . N 7 HOH A 10 610 33 HOH HOH . N 7 HOH A 11 611 2 HOH HOH . N 7 HOH A 12 612 71 HOH HOH . N 7 HOH A 13 613 19 HOH HOH . N 7 HOH A 14 614 59 HOH HOH . N 7 HOH A 15 615 24 HOH HOH . N 7 HOH A 16 616 44 HOH HOH . N 7 HOH A 17 617 7 HOH HOH . N 7 HOH A 18 618 3 HOH HOH . N 7 HOH A 19 619 125 HOH HOH . N 7 HOH A 20 620 75 HOH HOH . N 7 HOH A 21 621 23 HOH HOH . N 7 HOH A 22 622 41 HOH HOH . N 7 HOH A 23 623 139 HOH HOH . N 7 HOH A 24 624 76 HOH HOH . N 7 HOH A 25 625 117 HOH HOH . N 7 HOH A 26 626 55 HOH HOH . N 7 HOH A 27 627 35 HOH HOH . N 7 HOH A 28 628 56 HOH HOH . N 7 HOH A 29 629 39 HOH HOH . N 7 HOH A 30 630 11 HOH HOH . N 7 HOH A 31 631 78 HOH HOH . N 7 HOH A 32 632 10 HOH HOH . N 7 HOH A 33 633 132 HOH HOH . N 7 HOH A 34 634 47 HOH HOH . N 7 HOH A 35 635 142 HOH HOH . N 7 HOH A 36 636 60 HOH HOH . N 7 HOH A 37 637 126 HOH HOH . N 7 HOH A 38 638 27 HOH HOH . N 7 HOH A 39 639 72 HOH HOH . N 7 HOH A 40 640 114 HOH HOH . N 7 HOH A 41 641 38 HOH HOH . N 7 HOH A 42 642 83 HOH HOH . N 7 HOH A 43 643 109 HOH HOH . N 7 HOH A 44 644 57 HOH HOH . N 7 HOH A 45 645 50 HOH HOH . N 7 HOH A 46 646 18 HOH HOH . N 7 HOH A 47 647 42 HOH HOH . N 7 HOH A 48 648 127 HOH HOH . N 7 HOH A 49 649 82 HOH HOH . N 7 HOH A 50 650 121 HOH HOH . N 7 HOH A 51 651 22 HOH HOH . N 7 HOH A 52 652 97 HOH HOH . N 7 HOH A 53 653 12 HOH HOH . N 7 HOH A 54 654 45 HOH HOH . N 7 HOH A 55 655 77 HOH HOH . N 7 HOH A 56 656 89 HOH HOH . N 7 HOH A 57 657 14 HOH HOH . N 7 HOH A 58 658 92 HOH HOH . N 7 HOH A 59 659 151 HOH HOH . N 7 HOH A 60 660 40 HOH HOH . N 7 HOH A 61 661 34 HOH HOH . N 7 HOH A 62 662 28 HOH HOH . N 7 HOH A 63 663 124 HOH HOH . N 7 HOH A 64 664 58 HOH HOH . N 7 HOH A 65 665 9 HOH HOH . O 7 HOH D 1 301 73 HOH HOH . O 7 HOH D 2 302 115 HOH HOH . O 7 HOH D 3 303 26 HOH HOH . O 7 HOH D 4 304 66 HOH HOH . O 7 HOH D 5 305 61 HOH HOH . O 7 HOH D 6 306 4 HOH HOH . O 7 HOH D 7 307 37 HOH HOH . O 7 HOH D 8 308 43 HOH HOH . O 7 HOH D 9 309 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 3.436 31.08 66.808 1 95.25 ? C1 EDO 506 A 1 HETATM 2 O O1 EDO . . . I 6 2.044 30.881 66.662 1 94.22 ? O1 EDO 506 A 1 HETATM 3 C C2 EDO . . . I 6 4.17 30.191 65.781 1 97.89 ? C2 EDO 506 A 1 HETATM 4 O O2 EDO . . . I 6 5.556 30.507 65.743 1 99.7 ? O2 EDO 506 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 333 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #