data_7QTV # _model_server_result.job_id CcmasegdSI1flKHbZEwcGw _model_server_result.datetime_utc '2024-11-04 23:02:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qtv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":1104}' # _entry.id 7QTV # _exptl.entry_id 7QTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QTV _cell.length_a 117.47 _cell.length_b 118.08 _cell.length_c 494.66 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 L N N ? 9 M N N ? 9 N N N ? 9 T N N ? 9 U N N ? 9 V N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 F 1 NAG B 401 NAG 4 n G NAG 2 F 2 NAG B 402 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 209 A CYS 204 1_555 A SG CYS 247 A CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 B SG CYS 126 B CYS 126 1_555 B SG CYS 149 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 159 B CYS 159 1_555 B SG CYS 175 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 B SG CYS 213 B CYS 213 1_555 B SG CYS 276 B CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 D SG CYS 209 C CYS 204 1_555 D SG CYS 247 C CYS 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 E SG CYS 126 D CYS 126 1_555 E SG CYS 149 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 E SG CYS 159 D CYS 159 1_555 E SG CYS 175 D CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 E SG CYS 213 D CYS 213 1_555 E SG CYS 276 D CYS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 B ND2 ASN 158 B ASN 158 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale2 B ND2 ASN 205 B ASN 205 1_555 O C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.37 ? covale ? covale3 B ND2 ASN 265 B ASN 265 1_555 P C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale4 E ND2 ASN 158 D ASN 158 1_555 X C1 NAG . D NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.371 ? metalc ? metalc1 A OE2 GLU 332 A GLU 327 1_555 L MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? metalc ? metalc2 A OD1 ASP 374 A ASP 369 1_555 H BE BEF . A BEF 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.403 ? metalc ? metalc3 A OD1 ASP 374 A ASP 369 1_555 M MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? metalc ? metalc4 A OD2 ASP 374 A ASP 369 1_555 M MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc5 A O THR 376 A THR 371 1_555 M MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc6 A OG1 THR 376 A THR 371 1_555 M MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc7 A OD1 ASP 715 A ASP 710 1_555 M MG MG . A MG 1106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? metalc ? metalc8 A OD1 ASP 745 A ASP 740 1_555 N MG MG . A MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 A OD2 ASP 745 A ASP 740 1_555 N MG MG . A MG 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc10 A OD1 ASN 781 A ASN 776 1_555 L MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc11 A OE1 GLU 784 A GLU 779 1_555 L MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.885 ? metalc ? metalc12 A OE2 GLU 784 A GLU 779 1_555 L MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc13 A OD1 ASP 809 A ASP 804 1_555 L MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc14 A OD2 ASP 809 A ASP 804 1_555 L MG MG . A MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc15 L MG MG . A MG 1105 1_555 Z O HOH . A HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc16 L MG MG . A MG 1105 1_555 Z O HOH . A HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc17 L MG MG . A MG 1105 1_555 Z O HOH . A HOH 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc18 N MG MG . A MG 1107 1_555 Z O HOH . A HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc19 N MG MG . A MG 1107 1_555 Z O HOH . A HOH 1205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc20 D OE1 GLU 332 C GLU 327 1_555 T MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc21 D OD2 ASP 374 C ASP 369 1_555 V MG MG . C MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 ? metalc ? metalc22 D O THR 376 C THR 371 1_555 V MG MG . C MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? metalc ? metalc23 D OD1 ASP 715 C ASP 710 1_555 V MG MG . C MG 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.739 ? metalc ? metalc24 D OD1 ASP 745 C ASP 740 1_555 U MG MG . C MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc25 D OD2 ASP 745 C ASP 740 1_555 U MG MG . C MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc26 D OD1 ASN 781 C ASN 776 1_555 T MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc27 D OE1 GLU 784 C GLU 779 1_555 T MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.837 ? metalc ? metalc28 D OD2 ASP 809 C ASP 804 1_555 T MG MG . C MG 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc29 T MG MG . C MG 1103 1_555 AA O HOH . C HOH 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc30 T MG MG . C MG 1103 1_555 AA O HOH . C HOH 1202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.869 ? metalc ? metalc31 T MG MG . C MG 1103 1_555 AA O HOH . C HOH 1203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc32 U MG MG . C MG 1104 1_555 AA O HOH . C HOH 1204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7QTV _atom_sites.fract_transf_matrix[1][1] 0.008513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008469 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 5 BEF A 1 1101 1105 BEF BEF . I 6 1AT A 1 1102 1106 1AT 1AT . J 7 CLR A 1 1103 1107 CLR CLR . K 8 1DS A 1 1104 1108 1DS 1DS . L 9 MG A 1 1105 1 MG MG . M 9 MG A 1 1106 4 MG MG . N 9 MG A 1 1107 5 MG MG . O 10 NAG B 1 401 403 NAG NAG . P 10 NAG B 1 402 404 NAG NAG . Q 7 CLR G 1 101 1102 CLR CLR . R 5 BEF C 1 1101 1102 BEF BEF . S 7 CLR C 1 1102 1106 CLR CLR . T 9 MG C 1 1103 3 MG MG . U 9 MG C 1 1104 6 MG MG . V 9 MG C 1 1105 7 MG MG . W 10 NAG D 1 401 402 NAG NAG . X 10 NAG D 1 402 404 NAG NAG . Y 7 CLR E 1 101 1105 CLR CLR . Z 11 HOH A 1 1201 5 HOH HOH . Z 11 HOH A 2 1202 6 HOH HOH . Z 11 HOH A 3 1203 4 HOH HOH . Z 11 HOH A 4 1204 1104 HOH HOH . Z 11 HOH A 5 1205 9 HOH HOH . AA 11 HOH C 1 1201 1104 HOH HOH . AA 11 HOH C 2 1202 8 HOH HOH . AA 11 HOH C 3 1203 1103 HOH HOH . AA 11 HOH C 4 1204 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id U _atom_site.label_entity_id 9 _atom_site.Cartn_x 50.761 _atom_site.Cartn_y -88.86 _atom_site.Cartn_z -93.217 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 144.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1104 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #