data_7QUB # _model_server_result.job_id rWklb0saBeXVrxAbaUMuJg _model_server_result.datetime_utc '2024-11-13 21:33:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7QUB # _exptl.entry_id 7QUB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 550.691 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QUB _cell.length_a 122.336 _cell.length_b 122.336 _cell.length_c 122.336 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 146 AAA CYS 147 1_555 B C8 I70 . AAA I70 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? metalc ? metalc1 A OG1 THR 25 AAA THR 26 1_555 C NA NA . AAA NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc2 A O GLY 144 AAA GLY 145 1_555 C NA NA . AAA NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc3 A O CYS 146 AAA CYS 147 1_555 C NA NA . AAA NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? # _chem_comp.formula 'C27 H46 N6 O6' _chem_comp.formula_weight 550.691 _chem_comp.id I70 _chem_comp.mon_nstd_flag . _chem_comp.name (1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C32 C30 I70 sing 152 n n C26 C30 I70 sing 153 n n C30 C11 I70 sing 154 n n C30 C31 I70 sing 155 n n C13 C16 I70 sing 156 n n C13 N13 I70 sing 157 n n O29 C9 I70 doub 158 n n C16 C34 I70 sing 159 n n C16 C18 I70 sing 160 n n O38 C15 I70 doub 161 n n C11 N10 I70 sing 162 n n C11 C12 I70 sing 163 n n C29 C7 I70 sing 164 n n C9 N10 I70 sing 165 n n C9 N8 I70 sing 166 n n N13 C12 I70 sing 167 n n N13 C14 I70 sing 168 n n N2 C1 I70 sing 169 n n C34 C18 I70 sing 170 n n C34 C14 I70 sing 171 n n C25 C18 I70 sing 172 n n C12 O33 I70 doub 173 n n C21 C22 I70 sing 174 n n C21 C20 I70 sing 175 n n C18 C23 I70 sing 176 n n C15 C14 I70 sing 177 n n C15 N16 I70 sing 178 n n C22 N23 I70 sing 179 n n C7 N8 I70 sing 180 n n C7 C28 I70 sing 181 n n C7 C27 I70 sing 182 n n O9 C8 I70 sing 183 n n C1 C8 I70 sing 184 n n C1 O5 I70 doub 185 n n C17 N16 I70 sing 186 n n C17 C8 I70 sing 187 n n C17 C19 I70 sing 188 n n C20 C19 I70 sing 189 n n C20 C24 I70 sing 190 n n N23 C24 I70 sing 191 n n C24 O26 I70 doub 192 n n C11 H1 I70 sing 193 n n C13 H2 I70 sing 194 n n C13 H3 I70 sing 195 n n C14 H4 I70 sing 196 n n C16 H5 I70 sing 197 n n C17 H6 I70 sing 198 n n C19 H7 I70 sing 199 n n C19 H8 I70 sing 200 n n C20 H9 I70 sing 201 n n C21 H10 I70 sing 202 n n C21 H11 I70 sing 203 n n C22 H12 I70 sing 204 n n C22 H13 I70 sing 205 n n C23 H14 I70 sing 206 n n C23 H15 I70 sing 207 n n C23 H16 I70 sing 208 n n C25 H17 I70 sing 209 n n C25 H18 I70 sing 210 n n C25 H19 I70 sing 211 n n C26 H20 I70 sing 212 n n C26 H21 I70 sing 213 n n C26 H22 I70 sing 214 n n C27 H23 I70 sing 215 n n C27 H24 I70 sing 216 n n C27 H25 I70 sing 217 n n C28 H26 I70 sing 218 n n C28 H27 I70 sing 219 n n C28 H28 I70 sing 220 n n C29 H29 I70 sing 221 n n C29 H30 I70 sing 222 n n C29 H31 I70 sing 223 n n C31 H32 I70 sing 224 n n C31 H33 I70 sing 225 n n C31 H34 I70 sing 226 n n C32 H35 I70 sing 227 n n C32 H36 I70 sing 228 n n C32 H37 I70 sing 229 n n C34 H38 I70 sing 230 n n C8 H39 I70 sing 231 n n N10 H40 I70 sing 232 n n N16 H41 I70 sing 233 n n N2 H42 I70 sing 234 n n N2 H43 I70 sing 235 n n N23 H44 I70 sing 236 n n N8 H45 I70 sing 237 n n O9 H46 I70 sing 238 n n # _atom_sites.entry_id 7QUB _atom_sites.fract_transf_matrix[1][1] 0.008174 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008174 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 I70 AAA 1 201 201 I70 LIG . C 3 NA AAA 1 202 1 NA NA . D 4 HOH AAA 1 301 6 HOH HOH . D 4 HOH AAA 2 302 107 HOH HOH . D 4 HOH AAA 3 303 42 HOH HOH . D 4 HOH AAA 4 304 11 HOH HOH . D 4 HOH AAA 5 305 25 HOH HOH . D 4 HOH AAA 6 306 3 HOH HOH . D 4 HOH AAA 7 307 74 HOH HOH . D 4 HOH AAA 8 308 4 HOH HOH . D 4 HOH AAA 9 309 47 HOH HOH . D 4 HOH AAA 10 310 14 HOH HOH . D 4 HOH AAA 11 311 105 HOH HOH . D 4 HOH AAA 12 312 69 HOH HOH . D 4 HOH AAA 13 313 41 HOH HOH . D 4 HOH AAA 14 314 9 HOH HOH . D 4 HOH AAA 15 315 97 HOH HOH . D 4 HOH AAA 16 316 1 HOH HOH . D 4 HOH AAA 17 317 5 HOH HOH . D 4 HOH AAA 18 318 112 HOH HOH . D 4 HOH AAA 19 319 7 HOH HOH . D 4 HOH AAA 20 320 68 HOH HOH . D 4 HOH AAA 21 321 73 HOH HOH . D 4 HOH AAA 22 322 98 HOH HOH . D 4 HOH AAA 23 323 13 HOH HOH . D 4 HOH AAA 24 324 15 HOH HOH . D 4 HOH AAA 25 325 2 HOH HOH . D 4 HOH AAA 26 326 32 HOH HOH . D 4 HOH AAA 27 327 39 HOH HOH . D 4 HOH AAA 28 328 95 HOH HOH . D 4 HOH AAA 29 329 26 HOH HOH . D 4 HOH AAA 30 330 17 HOH HOH . D 4 HOH AAA 31 331 31 HOH HOH . D 4 HOH AAA 32 332 92 HOH HOH . D 4 HOH AAA 33 333 101 HOH HOH . D 4 HOH AAA 34 334 27 HOH HOH . D 4 HOH AAA 35 335 78 HOH HOH . D 4 HOH AAA 36 336 99 HOH HOH . D 4 HOH AAA 37 337 44 HOH HOH . D 4 HOH AAA 38 338 20 HOH HOH . D 4 HOH AAA 39 339 40 HOH HOH . D 4 HOH AAA 40 340 110 HOH HOH . D 4 HOH AAA 41 341 58 HOH HOH . D 4 HOH AAA 42 342 33 HOH HOH . D 4 HOH AAA 43 343 114 HOH HOH . D 4 HOH AAA 44 344 46 HOH HOH . D 4 HOH AAA 45 345 70 HOH HOH . D 4 HOH AAA 46 346 102 HOH HOH . D 4 HOH AAA 47 347 56 HOH HOH . D 4 HOH AAA 48 348 113 HOH HOH . D 4 HOH AAA 49 349 109 HOH HOH . D 4 HOH AAA 50 350 86 HOH HOH . D 4 HOH AAA 51 351 106 HOH HOH . D 4 HOH AAA 52 352 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I70 . . . B 2 37.524 56.294 3.375 1 39.88 0 C1 I70 201 AAA 1 HETATM 2 C C11 I70 . . . B 2 36.277 64.827 2.626 1 38.23 0 C11 I70 201 AAA 1 HETATM 3 C C12 I70 . . . B 2 36.112 63.581 3.494 1 36.42 0 C12 I70 201 AAA 1 HETATM 4 C C13 I70 . . . B 2 33.745 63.413 2.653 1 38.13 0 C13 I70 201 AAA 1 HETATM 5 C C14 I70 . . . B 2 34.777 61.642 4.023 1 39.12 0 C14 I70 201 AAA 1 HETATM 6 C C15 I70 . . . B 2 35.686 60.635 3.326 1 39.61 0 C15 I70 201 AAA 1 HETATM 7 C C16 I70 . . . B 2 32.688 62.362 2.992 1 36.63 0 C16 I70 201 AAA 1 HETATM 8 C C17 I70 . . . B 2 37.291 58.82 3.697 1 36.02 0 C17 I70 201 AAA 1 HETATM 9 C C18 I70 . . . B 2 32.255 62.15 4.424 1 40.94 0 C18 I70 201 AAA 1 HETATM 10 C C19 I70 . . . B 2 38.644 59.183 4.306 1 36.31 0 C19 I70 201 AAA 1 HETATM 11 C C20 I70 . . . B 2 39.263 60.442 3.696 1 36.8 0 C20 I70 201 AAA 1 HETATM 12 C C21 I70 . . . B 2 39.513 60.355 2.195 1 36.42 0 C21 I70 201 AAA 1 HETATM 13 C C22 I70 . . . B 2 40.814 61.115 1.946 1 33.49 0 C22 I70 201 AAA 1 HETATM 14 C C23 I70 . . . B 2 32.628 63.16 5.484 1 36.18 0 C23 I70 201 AAA 1 HETATM 15 C C24 I70 . . . B 2 40.63 60.749 4.261 1 34.04 0 C24 I70 201 AAA 1 HETATM 16 C C25 I70 . . . B 2 30.873 61.571 4.66 1 41.73 0 C25 I70 201 AAA 1 HETATM 17 C C26 I70 . . . B 2 36.342 63.777 0.283 1 36.81 0 C26 I70 201 AAA 1 HETATM 18 C C27 I70 . . . B 2 36.554 66.015 7.64 1 42.38 0 C27 I70 201 AAA 1 HETATM 19 C C28 I70 . . . B 2 37.846 68.145 7.318 1 42.33 0 C28 I70 201 AAA 1 HETATM 20 C C29 I70 . . . B 2 35.38 68.136 6.963 1 41.2 0 C29 I70 201 AAA 1 HETATM 21 C C30 I70 . . . B 2 37.081 64.652 1.307 1 37.29 0 C30 I70 201 AAA 1 HETATM 22 C C31 I70 . . . B 2 37.272 66.029 0.666 1 39.85 0 C31 I70 201 AAA 1 HETATM 23 C C32 I70 . . . B 2 38.445 64.023 1.587 1 36.54 0 C32 I70 201 AAA 1 HETATM 24 C C34 I70 . . . B 2 33.329 61.273 3.829 1 35.85 0 C34 I70 201 AAA 1 HETATM 25 C C7 I70 . . . B 2 36.664 67.314 6.845 1 43.34 0 C7 I70 201 AAA 1 HETATM 26 C C8 I70 . . . B 2 36.735 57.415 4.034 1 41.2 0 C8 I70 201 AAA 1 HETATM 27 C C9 I70 . . . B 2 36.222 66.214 4.624 1 42.84 0 C9 I70 201 AAA 1 HETATM 28 N N10 I70 . . . B 2 36.831 65.849 3.481 1 38.28 0 N10 I70 201 AAA 1 HETATM 29 N N13 I70 . . . B 2 34.93 62.957 3.403 1 35.96 0 N13 I70 201 AAA 1 HETATM 30 N N16 I70 . . . B 2 36.308 59.801 4.157 1 35.46 0 N16 I70 201 AAA 1 HETATM 31 N N2 I70 . . . B 2 36.758 55.318 2.633 1 47.75 0 N2 I70 201 AAA 1 HETATM 32 N N23 I70 . . . B 2 41.389 61.226 3.28 1 34.36 0 N23 I70 201 AAA 1 HETATM 33 N N8 I70 . . . B 2 36.971 66.975 5.442 1 42.74 0 N8 I70 201 AAA 1 HETATM 34 O O26 I70 . . . B 2 40.978 60.613 5.46 1 34.52 0 O26 I70 201 AAA 1 HETATM 35 O O29 I70 . . . B 2 35.057 65.898 4.869 1 40.48 0 O29 I70 201 AAA 1 HETATM 36 O O33 I70 . . . B 2 37.022 63.161 4.229 1 36.22 0 O33 I70 201 AAA 1 HETATM 37 O O38 I70 . . . B 2 35.896 60.688 2.109 1 36.77 0 O38 I70 201 AAA 1 HETATM 38 O O5 I70 . . . B 2 38.736 56.189 3.444 1 47.6 0 O5 I70 201 AAA 1 HETATM 39 O O9 I70 . . . B 2 35.37 57.336 3.57 1 38.8 0 O9 I70 201 AAA 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 39 #