data_7QVA # _model_server_result.job_id vuKKspGHqZpwenlBsdxtcA _model_server_result.datetime_utc '2025-07-16 22:34:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qva # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1202}' # _entry.id 7QVA # _exptl.entry_id 7QVA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 422.34 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Mangiferin _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QVA _cell.length_a 76.65 _cell.length_b 78.858 _cell.length_c 147.348 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QVA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H18 O11' _chem_comp.formula_weight 422.34 _chem_comp.id HZI _chem_comp.mon_nstd_flag n _chem_comp.name Mangiferin _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-[(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-1,3,6,7-tetrakis(oxidanyl)xanthen-9-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 HZI sing 243 n n C4 O4 HZI sing 244 n n C4 C3 HZI sing 245 n n C4 C5 HZI sing 246 n n C3 C2 HZI sing 247 n n C6 C5 HZI sing 248 n n C6 O6 HZI sing 249 n n C2 O2 HZI sing 250 n n C2 C1 HZI sing 251 n n C5 O5 HZI sing 252 n n O5 C1 HZI sing 253 n n C1 C12 HZI sing 254 n n O14 C13 HZI sing 255 n n C12 C13 HZI sing 256 n y C12 C29 HZI doub 257 n y C13 C15 HZI doub 258 n y C15 C16 HZI sing 259 n y O30 C29 HZI sing 260 n n C29 C28 HZI sing 261 n y C16 C28 HZI doub 262 n y C16 O17 HZI sing 263 n n C28 C26 HZI sing 264 n n O17 C18 HZI sing 265 n n C26 O27 HZI doub 266 n n C26 C25 HZI sing 267 n n C18 C25 HZI doub 268 n y C18 C19 HZI sing 269 n y C25 C24 HZI sing 270 n y C19 C20 HZI doub 271 n y C24 C22 HZI doub 272 n y C20 C22 HZI sing 273 n y C20 O21 HZI sing 274 n n C22 O23 HZI sing 275 n n C1 H1 HZI sing 276 n n C5 H4 HZI sing 277 n n C6 H61 HZI sing 278 n n C6 H62 HZI sing 279 n n C4 H6 HZI sing 280 n n C3 H3 HZI sing 281 n n C2 H2 HZI sing 282 n n C15 H8 HZI sing 283 n n C19 H9 HZI sing 284 n n C24 H10 HZI sing 285 n n O6 HO6 HZI sing 286 n n O4 HO4 HZI sing 287 n n O3 HO3 HZI sing 288 n n O2 HO2 HZI sing 289 n n O21 H16 HZI sing 290 n n O23 H17 HZI sing 291 n n O30 H18 HZI sing 292 n n O14 H11 HZI sing 293 n n # _atom_sites.entry_id 7QVA _atom_sites.fract_transf_matrix[1][1] 0.013046 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012681 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 1201 1201 FAD FAD . C 3 HZI A 1 1202 1301 HZI MAN . D 4 SO4 A 1 1203 1401 SO4 SO4 . E 4 SO4 A 1 1204 1501 SO4 SO4 . F 4 SO4 A 1 1205 1601 SO4 SO4 . G 5 HOH A 1 1301 36 HOH HOH . G 5 HOH A 2 1302 5 HOH HOH . G 5 HOH A 3 1303 49 HOH HOH . G 5 HOH A 4 1304 8 HOH HOH . G 5 HOH A 5 1305 118 HOH HOH . G 5 HOH A 6 1306 42 HOH HOH . G 5 HOH A 7 1307 14 HOH HOH . G 5 HOH A 8 1308 68 HOH HOH . G 5 HOH A 9 1309 90 HOH HOH . G 5 HOH A 10 1310 48 HOH HOH . G 5 HOH A 11 1311 113 HOH HOH . G 5 HOH A 12 1312 104 HOH HOH . G 5 HOH A 13 1313 83 HOH HOH . G 5 HOH A 14 1314 59 HOH HOH . G 5 HOH A 15 1315 2 HOH HOH . G 5 HOH A 16 1316 58 HOH HOH . G 5 HOH A 17 1317 22 HOH HOH . G 5 HOH A 18 1318 82 HOH HOH . G 5 HOH A 19 1319 17 HOH HOH . G 5 HOH A 20 1320 4 HOH HOH . G 5 HOH A 21 1321 121 HOH HOH . G 5 HOH A 22 1322 35 HOH HOH . G 5 HOH A 23 1323 28 HOH HOH . G 5 HOH A 24 1324 65 HOH HOH . G 5 HOH A 25 1325 43 HOH HOH . G 5 HOH A 26 1326 53 HOH HOH . G 5 HOH A 27 1327 1 HOH HOH . G 5 HOH A 28 1328 94 HOH HOH . G 5 HOH A 29 1329 122 HOH HOH . G 5 HOH A 30 1330 62 HOH HOH . G 5 HOH A 31 1331 70 HOH HOH . G 5 HOH A 32 1332 29 HOH HOH . G 5 HOH A 33 1333 98 HOH HOH . G 5 HOH A 34 1334 20 HOH HOH . G 5 HOH A 35 1335 47 HOH HOH . G 5 HOH A 36 1336 73 HOH HOH . G 5 HOH A 37 1337 96 HOH HOH . G 5 HOH A 38 1338 119 HOH HOH . G 5 HOH A 39 1339 108 HOH HOH . G 5 HOH A 40 1340 21 HOH HOH . G 5 HOH A 41 1341 56 HOH HOH . G 5 HOH A 42 1342 11 HOH HOH . G 5 HOH A 43 1343 7 HOH HOH . G 5 HOH A 44 1344 64 HOH HOH . G 5 HOH A 45 1345 34 HOH HOH . G 5 HOH A 46 1346 86 HOH HOH . G 5 HOH A 47 1347 112 HOH HOH . G 5 HOH A 48 1348 27 HOH HOH . G 5 HOH A 49 1349 50 HOH HOH . G 5 HOH A 50 1350 103 HOH HOH . G 5 HOH A 51 1351 19 HOH HOH . G 5 HOH A 52 1352 110 HOH HOH . G 5 HOH A 53 1353 106 HOH HOH . G 5 HOH A 54 1354 81 HOH HOH . G 5 HOH A 55 1355 84 HOH HOH . G 5 HOH A 56 1356 12 HOH HOH . G 5 HOH A 57 1357 13 HOH HOH . G 5 HOH A 58 1358 18 HOH HOH . G 5 HOH A 59 1359 72 HOH HOH . G 5 HOH A 60 1360 45 HOH HOH . G 5 HOH A 61 1361 40 HOH HOH . G 5 HOH A 62 1362 88 HOH HOH . G 5 HOH A 63 1363 44 HOH HOH . G 5 HOH A 64 1364 102 HOH HOH . G 5 HOH A 65 1365 31 HOH HOH . G 5 HOH A 66 1366 39 HOH HOH . G 5 HOH A 67 1367 67 HOH HOH . G 5 HOH A 68 1368 46 HOH HOH . G 5 HOH A 69 1369 95 HOH HOH . G 5 HOH A 70 1370 89 HOH HOH . G 5 HOH A 71 1371 109 HOH HOH . G 5 HOH A 72 1372 93 HOH HOH . G 5 HOH A 73 1373 71 HOH HOH . G 5 HOH A 74 1374 10 HOH HOH . G 5 HOH A 75 1375 24 HOH HOH . G 5 HOH A 76 1376 80 HOH HOH . G 5 HOH A 77 1377 78 HOH HOH . G 5 HOH A 78 1378 16 HOH HOH . G 5 HOH A 79 1379 101 HOH HOH . G 5 HOH A 80 1380 57 HOH HOH . G 5 HOH A 81 1381 25 HOH HOH . G 5 HOH A 82 1382 107 HOH HOH . G 5 HOH A 83 1383 99 HOH HOH . G 5 HOH A 84 1384 91 HOH HOH . G 5 HOH A 85 1385 38 HOH HOH . G 5 HOH A 86 1386 114 HOH HOH . G 5 HOH A 87 1387 51 HOH HOH . G 5 HOH A 88 1388 85 HOH HOH . G 5 HOH A 89 1389 6 HOH HOH . G 5 HOH A 90 1390 76 HOH HOH . G 5 HOH A 91 1391 55 HOH HOH . G 5 HOH A 92 1392 23 HOH HOH . G 5 HOH A 93 1393 97 HOH HOH . G 5 HOH A 94 1394 111 HOH HOH . G 5 HOH A 95 1395 66 HOH HOH . G 5 HOH A 96 1396 92 HOH HOH . G 5 HOH A 97 1397 33 HOH HOH . G 5 HOH A 98 1398 100 HOH HOH . G 5 HOH A 99 1399 69 HOH HOH . G 5 HOH A 100 1400 3 HOH HOH . G 5 HOH A 101 1401 117 HOH HOH . G 5 HOH A 102 1402 120 HOH HOH . G 5 HOH A 103 1403 9 HOH HOH . G 5 HOH A 104 1404 60 HOH HOH . G 5 HOH A 105 1405 116 HOH HOH . G 5 HOH A 106 1406 77 HOH HOH . G 5 HOH A 107 1407 41 HOH HOH . G 5 HOH A 108 1408 15 HOH HOH . G 5 HOH A 109 1409 75 HOH HOH . G 5 HOH A 110 1410 30 HOH HOH . G 5 HOH A 111 1411 105 HOH HOH . G 5 HOH A 112 1412 63 HOH HOH . G 5 HOH A 113 1413 32 HOH HOH . G 5 HOH A 114 1414 52 HOH HOH . G 5 HOH A 115 1415 87 HOH HOH . G 5 HOH A 116 1416 115 HOH HOH . G 5 HOH A 117 1417 26 HOH HOH . G 5 HOH A 118 1418 54 HOH HOH . G 5 HOH A 119 1419 79 HOH HOH . G 5 HOH A 120 1420 37 HOH HOH . G 5 HOH A 121 1421 74 HOH HOH . G 5 HOH A 122 1422 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HZI . . . C 3 19.563 29.777 21.903 0.87 98.13 ? C1 HZI 1202 A 1 HETATM 2 C C5 HZI . . . C 3 21.058 28.44 20.77 0.87 93.24 ? C5 HZI 1202 A 1 HETATM 3 C C6 HZI . . . C 3 22.577 28.215 20.323 0.87 95.26 ? C6 HZI 1202 A 1 HETATM 4 C C4 HZI . . . C 3 19.948 28.032 19.712 0.87 89.48 ? C4 HZI 1202 A 1 HETATM 5 C C3 HZI . . . C 3 18.613 28.348 20.163 0.87 87.47 ? C3 HZI 1202 A 1 HETATM 6 C C2 HZI . . . C 3 18.527 29.757 20.664 0.87 91.41 ? C2 HZI 1202 A 1 HETATM 7 C C12 HZI . . . C 3 19.053 30.424 23.252 0.87 108.11 ? C12 HZI 1202 A 1 HETATM 8 C C13 HZI . . . C 3 18.037 31.411 23.3 0.87 112.29 ? C13 HZI 1202 A 1 HETATM 9 C C15 HZI . . . C 3 17.495 31.907 24.412 0.87 113.98 ? C15 HZI 1202 A 1 HETATM 10 C C16 HZI . . . C 3 17.882 31.433 25.637 0.87 116.36 ? C16 HZI 1202 A 1 HETATM 11 C C18 HZI . . . C 3 17.595 31.762 28.13 0.87 117.75 ? C18 HZI 1202 A 1 HETATM 12 C C19 HZI . . . C 3 16.963 32.564 29.184 0.87 117.65 ? C19 HZI 1202 A 1 HETATM 13 C C20 HZI . . . C 3 17.27 32.354 30.512 0.87 116.51 ? C20 HZI 1202 A 1 HETATM 14 C C22 HZI . . . C 3 18.205 31.372 30.831 0.87 115.23 ? C22 HZI 1202 A 1 HETATM 15 C C24 HZI . . . C 3 18.824 30.595 29.838 0.87 115.18 ? C24 HZI 1202 A 1 HETATM 16 C C25 HZI . . . C 3 18.494 30.799 28.425 0.87 115.92 ? C25 HZI 1202 A 1 HETATM 17 C C26 HZI . . . C 3 19.183 30.005 27.244 0.87 115.33 ? C26 HZI 1202 A 1 HETATM 18 C C28 HZI . . . C 3 18.86 30.422 25.799 0.87 115.78 ? C28 HZI 1202 A 1 HETATM 19 C C29 HZI . . . C 3 19.452 29.925 24.49 0.87 112.79 ? C29 HZI 1202 A 1 HETATM 20 O O5 HZI . . . C 3 20.877 29.766 21.454 0.87 94.6 ? O5 HZI 1202 A 1 HETATM 21 O O6 HZI . . . C 3 23.388 29.022 21.155 0.87 96.14 ? O6 HZI 1202 A 1 HETATM 22 O O4 HZI . . . C 3 19.765 26.709 19.898 0.87 88.89 ? O4 HZI 1202 A 1 HETATM 23 O O3 HZI . . . C 3 17.82 28.234 19 0.87 84.98 ? O3 HZI 1202 A 1 HETATM 24 O O2 HZI . . . C 3 17.171 29.811 21.002 0.87 89.99 ? O2 HZI 1202 A 1 HETATM 25 O O14 HZI . . . C 3 17.679 31.824 22.187 0.87 114.7 ? O14 HZI 1202 A 1 HETATM 26 O O17 HZI . . . C 3 17.256 32 26.751 0.87 117.97 ? O17 HZI 1202 A 1 HETATM 27 O O21 HZI . . . C 3 16.651 33.131 31.516 0.87 116.12 ? O21 HZI 1202 A 1 HETATM 28 O O23 HZI . . . C 3 18.557 31.116 32.158 0.87 114.06 ? O23 HZI 1202 A 1 HETATM 29 O O27 HZI . . . C 3 19.949 29.095 27.427 0.87 113.54 ? O27 HZI 1202 A 1 HETATM 30 O O30 HZI . . . C 3 20.481 28.923 24.487 0.87 112.67 ? O30 HZI 1202 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 30 #