data_7QVZ # _model_server_result.job_id -usoQDuh3YjxfFOzLD9CRQ _model_server_result.datetime_utc '2024-11-29 08:09:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qvz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":507}' # _entry.id 7QVZ # _exptl.entry_id 7QVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QVZ _cell.length_a 60.152 _cell.length_b 71.546 _cell.length_c 78.371 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 24 A CYS 101 1_555 A SG CYS 106 A CYS 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 53 A CYS 130 1_555 A SG CYS 59 A CYS 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf3 A SG CYS 202 A CYS 279 1_555 A SG CYS 208 A CYS 285 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 229 A CYS 306 1_555 A SG CYS 241 A CYS 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf5 A SG CYS 309 A CYS 386 1_555 A SG CYS 372 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? disulf ? disulf6 A SG CYS 336 A CYS 413 1_555 A SG CYS 355 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 A SG CYS 363 A CYS 440 1_555 A SG CYS 368 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 19 A ASN 96 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 7QVZ _atom_sites.fract_transf_matrix[1][1] 0.016625 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01276 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 501 1502 NAG NAG . C 3 EDO A 1 502 1601 EDO EDO . D 4 SO4 A 1 503 1701 SO4 SO4 . E 3 EDO A 1 504 1801 EDO EDO . F 5 FNW A 1 505 1901 FNW XXX . G 6 DMS A 1 506 2001 DMS DMS . H 6 DMS A 1 507 2201 DMS DMS . I 7 HOH A 1 601 55 HOH HOH . I 7 HOH A 2 602 150 HOH HOH . I 7 HOH A 3 603 126 HOH HOH . I 7 HOH A 4 604 32 HOH HOH . I 7 HOH A 5 605 69 HOH HOH . I 7 HOH A 6 606 103 HOH HOH . I 7 HOH A 7 607 174 HOH HOH . I 7 HOH A 8 608 86 HOH HOH . I 7 HOH A 9 609 57 HOH HOH . I 7 HOH A 10 610 90 HOH HOH . I 7 HOH A 11 611 89 HOH HOH . I 7 HOH A 12 612 60 HOH HOH . I 7 HOH A 13 613 14 HOH HOH . I 7 HOH A 14 614 70 HOH HOH . I 7 HOH A 15 615 108 HOH HOH . I 7 HOH A 16 616 77 HOH HOH . I 7 HOH A 17 617 40 HOH HOH . I 7 HOH A 18 618 42 HOH HOH . I 7 HOH A 19 619 36 HOH HOH . I 7 HOH A 20 620 105 HOH HOH . I 7 HOH A 21 621 15 HOH HOH . I 7 HOH A 22 622 13 HOH HOH . I 7 HOH A 23 623 49 HOH HOH . I 7 HOH A 24 624 9 HOH HOH . I 7 HOH A 25 625 63 HOH HOH . I 7 HOH A 26 626 12 HOH HOH . I 7 HOH A 27 627 1 HOH HOH . I 7 HOH A 28 628 94 HOH HOH . I 7 HOH A 29 629 176 HOH HOH . I 7 HOH A 30 630 61 HOH HOH . I 7 HOH A 31 631 16 HOH HOH . I 7 HOH A 32 632 35 HOH HOH . I 7 HOH A 33 633 53 HOH HOH . I 7 HOH A 34 634 128 HOH HOH . I 7 HOH A 35 635 37 HOH HOH . I 7 HOH A 36 636 80 HOH HOH . I 7 HOH A 37 637 2 HOH HOH . I 7 HOH A 38 638 100 HOH HOH . I 7 HOH A 39 639 76 HOH HOH . I 7 HOH A 40 640 38 HOH HOH . I 7 HOH A 41 641 84 HOH HOH . I 7 HOH A 42 642 6 HOH HOH . I 7 HOH A 43 643 41 HOH HOH . I 7 HOH A 44 644 83 HOH HOH . I 7 HOH A 45 645 169 HOH HOH . I 7 HOH A 46 646 44 HOH HOH . I 7 HOH A 47 647 33 HOH HOH . I 7 HOH A 48 648 52 HOH HOH . I 7 HOH A 49 649 4 HOH HOH . I 7 HOH A 50 650 21 HOH HOH . I 7 HOH A 51 651 82 HOH HOH . I 7 HOH A 52 652 47 HOH HOH . I 7 HOH A 53 653 43 HOH HOH . I 7 HOH A 54 654 116 HOH HOH . I 7 HOH A 55 655 28 HOH HOH . I 7 HOH A 56 656 75 HOH HOH . I 7 HOH A 57 657 93 HOH HOH . I 7 HOH A 58 658 59 HOH HOH . I 7 HOH A 59 659 56 HOH HOH . I 7 HOH A 60 660 142 HOH HOH . I 7 HOH A 61 661 31 HOH HOH . I 7 HOH A 62 662 62 HOH HOH . I 7 HOH A 63 663 23 HOH HOH . I 7 HOH A 64 664 151 HOH HOH . I 7 HOH A 65 665 97 HOH HOH . I 7 HOH A 66 666 27 HOH HOH . I 7 HOH A 67 667 127 HOH HOH . I 7 HOH A 68 668 39 HOH HOH . I 7 HOH A 69 669 96 HOH HOH . I 7 HOH A 70 670 115 HOH HOH . I 7 HOH A 71 671 122 HOH HOH . I 7 HOH A 72 672 68 HOH HOH . I 7 HOH A 73 673 166 HOH HOH . I 7 HOH A 74 674 125 HOH HOH . I 7 HOH A 75 675 81 HOH HOH . I 7 HOH A 76 676 5 HOH HOH . I 7 HOH A 77 677 51 HOH HOH . I 7 HOH A 78 678 112 HOH HOH . I 7 HOH A 79 679 46 HOH HOH . I 7 HOH A 80 680 72 HOH HOH . I 7 HOH A 81 681 7 HOH HOH . I 7 HOH A 82 682 8 HOH HOH . I 7 HOH A 83 683 130 HOH HOH . I 7 HOH A 84 684 3 HOH HOH . I 7 HOH A 85 685 172 HOH HOH . I 7 HOH A 86 686 64 HOH HOH . I 7 HOH A 87 687 107 HOH HOH . I 7 HOH A 88 688 113 HOH HOH . I 7 HOH A 89 689 29 HOH HOH . I 7 HOH A 90 690 165 HOH HOH . I 7 HOH A 91 691 34 HOH HOH . I 7 HOH A 92 692 101 HOH HOH . I 7 HOH A 93 693 30 HOH HOH . I 7 HOH A 94 694 74 HOH HOH . I 7 HOH A 95 695 10 HOH HOH . I 7 HOH A 96 696 78 HOH HOH . I 7 HOH A 97 697 26 HOH HOH . I 7 HOH A 98 698 190 HOH HOH . I 7 HOH A 99 699 110 HOH HOH . I 7 HOH A 100 700 88 HOH HOH . I 7 HOH A 101 701 168 HOH HOH . I 7 HOH A 102 702 106 HOH HOH . I 7 HOH A 103 703 50 HOH HOH . I 7 HOH A 104 704 11 HOH HOH . I 7 HOH A 105 705 148 HOH HOH . I 7 HOH A 106 706 17 HOH HOH . I 7 HOH A 107 707 22 HOH HOH . I 7 HOH A 108 708 48 HOH HOH . I 7 HOH A 109 709 19 HOH HOH . I 7 HOH A 110 710 65 HOH HOH . I 7 HOH A 111 711 20 HOH HOH . I 7 HOH A 112 712 139 HOH HOH . I 7 HOH A 113 713 109 HOH HOH . I 7 HOH A 114 714 25 HOH HOH . I 7 HOH A 115 715 123 HOH HOH . I 7 HOH A 116 716 144 HOH HOH . I 7 HOH A 117 717 18 HOH HOH . I 7 HOH A 118 718 98 HOH HOH . I 7 HOH A 119 719 67 HOH HOH . I 7 HOH A 120 720 95 HOH HOH . I 7 HOH A 121 721 71 HOH HOH . I 7 HOH A 122 722 143 HOH HOH . I 7 HOH A 123 723 24 HOH HOH . I 7 HOH A 124 724 201 HOH HOH . I 7 HOH A 125 725 147 HOH HOH . I 7 HOH A 126 726 79 HOH HOH . I 7 HOH A 127 727 171 HOH HOH . I 7 HOH A 128 728 178 HOH HOH . I 7 HOH A 129 729 183 HOH HOH . I 7 HOH A 130 730 129 HOH HOH . I 7 HOH A 131 731 146 HOH HOH . I 7 HOH A 132 732 99 HOH HOH . I 7 HOH A 133 733 194 HOH HOH . I 7 HOH A 134 734 131 HOH HOH . I 7 HOH A 135 735 135 HOH HOH . I 7 HOH A 136 736 152 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . H 6 48.362 -1.799 12.086 1 60.7 ? S DMS 507 A 1 HETATM 2 O O DMS . . . H 6 49.32 -2.447 13.03 1 56.05 ? O DMS 507 A 1 HETATM 3 C C1 DMS . . . H 6 49.301 -1.03 10.741 1 49.81 ? C1 DMS 507 A 1 HETATM 4 C C2 DMS . . . H 6 47.606 -3.133 11.137 1 44.72 ? C2 DMS 507 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #