data_7QXN
#
_model_server_result.job_id            iNOYXNYXF-1r6Mx0ChIUiQ 
_model_server_result.datetime_utc      '2024-11-22 15:55:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7qxn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"XA","auth_seq_id":501}' 
#
_entry.id    7QXN 
#
_exptl.entry_id    7QXN 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          34 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7QXN 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7QXN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    46-meric 
_pdbx_struct_assembly.oligomeric_count      46 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 34 VA N N 
? 34 XA N N 
? 34 AB N N 
? 34 CB N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 I OE2 GLU 51 c GLU 52 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc2 I NE2 HIS 114 c HIS 115 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? 
metalc ? metalc3 I OD2 ASP 125 c ASP 126 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc4 M OG1 THR 223 A THR 223 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc5 VA O1G ATP . A ATP 501 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc6 VA O3G ATP . A ATP 501 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
metalc ? metalc7 VA O2B ATP . A ATP 501 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc8 N OG1 THR 233 B THR 233 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
metalc ? metalc9 XA O1G ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc10 XA O1B ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc11 XA O3B ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc12 XA O2A ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
metalc ? metalc13 P OG1 THR 213 D THR 213 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc14 AB O1G ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc15 AB O2G ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc16 AB O1B ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc17 Q OG1 THR 195 E THR 181 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc18 CB O2G ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc19 CB O3G ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc20 CB O1B ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc21 CB O3B ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? 
metalc ? metalc22 R OG1 THR 234 F THR 234 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? 
metalc ? metalc23 R OD1 ASP 286 F ASP 286 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? 
metalc ? metalc24 R OD2 ASP 286 F ASP 286 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? 
metalc ? metalc25 EB O3B ADP . F ADP 501 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     7QXN 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
UA 33 ZN c 1 401 401 ZN ZN . 
VA 34 ATP A 1 501 501 ATP ATP . 
WA 35 MG A 1 502 502 MG MG . 
XA 34 ATP B 1 501 501 ATP ATP . 
YA 35 MG B 1 502 502 MG MG . 
ZA 36 ADP C 1 501 501 ADP ADP . 
AB 34 ATP D 1 501 501 ATP ATP . 
BB 35 MG D 1 502 502 MG MG . 
CB 34 ATP E 1 401 401 ATP ATP . 
DB 35 MG E 1 402 402 MG MG . 
EB 36 ADP F 1 501 501 ADP ADP . 
FB 35 MG F 1 502 502 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . XA 34 244.839 210.268 249.253 1 193.18 ? PG ATP 501 B 1 
HETATM 2 O O1G ATP . . . XA 34 245.866 209.214 248.934 1 193.18 ? O1G ATP 501 B 1 
HETATM 3 O O2G ATP . . . XA 34 245.149 211.634 248.698 1 193.18 ? O2G ATP 501 B 1 
HETATM 4 O O3G ATP . . . XA 34 243.439 209.792 249.011 1 193.18 ? O3G ATP 501 B 1 
HETATM 5 P PB ATP . . . XA 34 244.978 209.336 251.921 1 193.18 ? PB ATP 501 B 1 
HETATM 6 O O1B ATP . . . XA 34 246.151 208.445 251.613 1 193.18 ? O1B ATP 501 B 1 
HETATM 7 O O2B ATP . . . XA 34 243.604 208.774 252.15 1 193.18 ? O2B ATP 501 B 1 
HETATM 8 O O3B ATP . . . XA 34 244.867 210.517 250.841 1 193.18 ? O3B ATP 501 B 1 
HETATM 9 P PA ATP . . . XA 34 246.909 210.379 253.516 1 193.18 ? PA ATP 501 B 1 
HETATM 10 O O1A ATP . . . XA 34 247.52 209.105 254.023 1 193.18 ? O1A ATP 501 B 1 
HETATM 11 O O2A ATP . . . XA 34 247.485 211.035 252.291 1 193.18 ? O2A ATP 501 B 1 
HETATM 12 O O3A ATP . . . XA 34 245.352 210.139 253.25 1 193.18 ? O3A ATP 501 B 1 
HETATM 13 O O5' ATP . . . XA 34 246.924 211.427 254.721 1 193.18 ? O5' ATP 501 B 1 
HETATM 14 C C5' ATP . . . XA 34 246.917 212.814 254.428 1 193.18 ? C5' ATP 501 B 1 
HETATM 15 C C4' ATP . . . XA 34 247.188 213.546 255.728 1 193.18 ? C4' ATP 501 B 1 
HETATM 16 O O4' ATP . . . XA 34 246.009 213.542 256.522 1 193.18 ? O4' ATP 501 B 1 
HETATM 17 C C3' ATP . . . XA 34 248.261 212.837 256.527 1 193.18 ? C3' ATP 501 B 1 
HETATM 18 O O3' ATP . . . XA 34 249.452 213.622 256.541 1 193.18 ? O3' ATP 501 B 1 
HETATM 19 C C2' ATP . . . XA 34 247.717 212.72 257.93 1 193.18 ? C2' ATP 501 B 1 
HETATM 20 O O2' ATP . . . XA 34 248.503 213.515 258.816 1 193.18 ? O2' ATP 501 B 1 
HETATM 21 C C1' ATP . . . XA 34 246.32 213.294 257.886 1 193.18 ? C1' ATP 501 B 1 
HETATM 22 N N9 ATP . . . XA 34 245.374 212.279 258.37 1 193.18 ? N9 ATP 501 B 1 
HETATM 23 C C8 ATP . . . XA 34 244.442 211.675 257.618 1 193.18 ? C8 ATP 501 B 1 
HETATM 24 N N7 ATP . . . XA 34 243.728 210.791 258.353 1 193.18 ? N7 ATP 501 B 1 
HETATM 25 C C5 ATP . . . XA 34 244.212 210.833 259.602 1 193.18 ? C5 ATP 501 B 1 
HETATM 26 C C6 ATP . . . XA 34 243.915 210.157 260.875 1 193.18 ? C6 ATP 501 B 1 
HETATM 27 N N6 ATP . . . XA 34 242.933 209.237 260.964 1 193.18 ? N6 ATP 501 B 1 
HETATM 28 N N1 ATP . . . XA 34 244.651 210.49 261.947 1 193.18 ? N1 ATP 501 B 1 
HETATM 29 C C2 ATP . . . XA 34 245.634 211.399 261.882 1 193.18 ? C2 ATP 501 B 1 
HETATM 30 N N3 ATP . . . XA 34 245.959 212.053 260.759 1 193.18 ? N3 ATP 501 B 1 
HETATM 31 C C4 ATP . . . XA 34 245.295 211.817 259.609 1 193.18 ? C4 ATP 501 B 1 
#
_model_server_stats.io_time_ms              221 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    413 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           31 
#