data_7QXU # _model_server_result.job_id bPnBZeiyGcIyccCqCFHstw _model_server_result.datetime_utc '2024-12-26 14:59:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7qxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"CB","auth_seq_id":401}' # _entry.id 7QXU # _exptl.entry_id 7QXU _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 34 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7QXU _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7QXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 46-meric _pdbx_struct_assembly.oligomeric_count 46 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 34 VA N N ? 34 XA N N ? 34 AB N N ? 34 CB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 M SG CYS 236 A CYS 236 1_555 M SG CYS 270 A CYS 270 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf2 Y SG CYS 41 M CYS 41 1_555 Y SG CYS 186 M CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 EA SG CYS 70 S CYS 43 1_555 EA SG CYS 223 S CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 MA SG CYS 41 m CYS 41 1_555 MA SG CYS 186 m CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf5 SA SG CYS 70 s CYS 43 1_555 SA SG CYS 223 s CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc1 I OE2 GLU 51 c GLU 52 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc2 I ND1 HIS 112 c HIS 113 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc3 I NE2 HIS 114 c HIS 115 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc4 I OD2 ASP 125 c ASP 126 1_555 UA ZN ZN . c ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc5 M OG1 THR 223 A THR 223 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 VA O1G ATP . A ATP 501 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc7 VA O3G ATP . A ATP 501 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc8 VA O2B ATP . A ATP 501 1_555 WA MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc9 N OG1 THR 233 B THR 233 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc10 XA O2G ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc11 XA O1B ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc12 XA O3B ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc13 XA O2A ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc14 XA O3A ATP . B ATP 501 1_555 YA MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc15 P OG1 THR 213 D THR 213 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc16 AB O1G ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc17 AB O2G ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc18 AB O1B ATP . D ATP 501 1_555 BB MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc19 Q OG1 THR 195 E THR 181 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc20 CB O3G ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc21 CB O1B ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.805 ? metalc ? metalc22 CB O2B ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc23 CB O3B ATP . E ATP 401 1_555 DB MG MG . E MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc24 R OG1 THR 234 F THR 234 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc25 R OD2 ASP 286 F ASP 286 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc26 EB O3B ADP . F ADP 501 1_555 FB MG MG . F MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 7QXU _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code UA 33 ZN c 1 401 401 ZN ZN . VA 34 ATP A 1 501 501 ATP ATP . WA 35 MG A 1 502 502 MG MG . XA 34 ATP B 1 501 501 ATP ATP . YA 35 MG B 1 502 502 MG MG . ZA 36 ADP C 1 501 501 ADP ADP . AB 34 ATP D 1 501 501 ATP ATP . BB 35 MG D 1 502 502 MG MG . CB 34 ATP E 1 401 401 ATP ATP . DB 35 MG E 1 402 402 MG MG . EB 36 ADP F 1 501 501 ADP ADP . FB 35 MG F 1 502 502 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . CB 34 249.674 200.601 189.519 1 206.26 ? PG ATP 401 E 1 HETATM 2 O O1G ATP . . . CB 34 248.686 200.657 190.659 1 206.26 ? O1G ATP 401 E 1 HETATM 3 O O2G ATP . . . CB 34 250.365 201.912 189.228 1 206.26 ? O2G ATP 401 E 1 HETATM 4 O O3G ATP . . . CB 34 250.595 199.405 189.55 1 206.26 ? O3G ATP 401 E 1 HETATM 5 P PB ATP . . . CB 34 248.988 201.207 186.877 1 206.26 ? PB ATP 401 E 1 HETATM 6 O O1B ATP . . . CB 34 250.313 200.799 186.28 1 206.26 ? O1B ATP 401 E 1 HETATM 7 O O2B ATP . . . CB 34 248.717 202.659 187.19 1 206.26 ? O2B ATP 401 E 1 HETATM 8 O O3B ATP . . . CB 34 248.756 200.35 188.22 1 206.26 ? O3B ATP 401 E 1 HETATM 9 P PA ATP . . . CB 34 247.859 200.972 184.33 1 206.26 ? PA ATP 401 E 1 HETATM 10 O O1A ATP . . . CB 34 249.176 200.467 183.791 1 206.26 ? O1A ATP 401 E 1 HETATM 11 O O2A ATP . . . CB 34 247.455 202.41 184.109 1 206.26 ? O2A ATP 401 E 1 HETATM 12 O O3A ATP . . . CB 34 247.815 200.674 185.912 1 206.26 ? O3A ATP 401 E 1 HETATM 13 O O5' ATP . . . CB 34 246.686 200.026 183.762 1 206.26 ? O5' ATP 401 E 1 HETATM 14 C C5' ATP . . . CB 34 246.739 198.614 183.951 1 206.26 ? C5' ATP 401 E 1 HETATM 15 C C4' ATP . . . CB 34 247.185 197.944 182.657 1 206.26 ? C4' ATP 401 E 1 HETATM 16 O O4' ATP . . . CB 34 246.04 197.614 181.866 1 206.26 ? O4' ATP 401 E 1 HETATM 17 C C3' ATP . . . CB 34 248.071 198.867 181.836 1 206.26 ? C3' ATP 401 E 1 HETATM 18 O O3' ATP . . . CB 34 249.375 198.287 181.695 1 206.26 ? O3' ATP 401 E 1 HETATM 19 C C2' ATP . . . CB 34 247.363 199.057 180.501 1 206.26 ? C2' ATP 401 E 1 HETATM 20 O O2' ATP . . . CB 34 248.151 198.618 179.386 1 206.26 ? O2' ATP 401 E 1 HETATM 21 C C1' ATP . . . CB 34 246.084 198.237 180.58 1 206.26 ? C1' ATP 401 E 1 HETATM 22 N N9 ATP . . . CB 34 244.908 199.127 180.413 1 206.26 ? N9 ATP 401 E 1 HETATM 23 C C8 ATP . . . CB 34 244.28 199.794 181.399 1 206.26 ? C8 ATP 401 E 1 HETATM 24 N N7 ATP . . . CB 34 243.24 200.521 180.914 1 206.26 ? N7 ATP 401 E 1 HETATM 25 C C5 ATP . . . CB 34 243.193 200.321 179.585 1 206.26 ? C5 ATP 401 E 1 HETATM 26 C C6 ATP . . . CB 34 242.342 200.786 178.464 1 206.26 ? C6 ATP 401 E 1 HETATM 27 N N6 ATP . . . CB 34 241.307 201.634 178.675 1 206.26 ? N6 ATP 401 E 1 HETATM 28 N N1 ATP . . . CB 34 242.635 200.336 177.223 1 206.26 ? N1 ATP 401 E 1 HETATM 29 C C2 ATP . . . CB 34 243.661 199.494 177 1 206.26 ? C2 ATP 401 E 1 HETATM 30 N N3 ATP . . . CB 34 244.473 199.032 177.968 1 206.26 ? N3 ATP 401 E 1 HETATM 31 C C4 ATP . . . CB 34 244.294 199.401 179.259 1 206.26 ? C4 ATP 401 E 1 # _model_server_stats.io_time_ms 130 _model_server_stats.parse_time_ms 58 _model_server_stats.create_model_time_ms 498 _model_server_stats.query_time_ms 1120 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 31 #